MD07G1089800.v1.1

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0002739
Physical Location & Seq
Forward (+)
9356793 .. 9358131
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1089800.v1.1.491

Sequence Viewer

Length: 267 bp
ATGGTGAACCTGAGGACGGCAATGGACTCAGCCTTCTGGGACTTGAACGTTTCTTCGCCTCAGACCCTTGAGGGCTCCGCCAAGGCCGTTCCTGGCGACCCATTTCCTCTCAACGGTGCTCGAGCCAGCCGAGCCCTTAGAATTCAGCAACTCTCTTCTGGGTGGCTTGGATTAATTGGGCAGTTCCGCCCGAAGAAACTATTTTCTTCTATTAAAGCTGAATTTACCAATGATGAGATGGGGGTCCCTACATTGAAGATGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3769

Protein Analysis

89

Amino Acids

9.68

Weight (kDa)

9.81

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 78, 187
AclI AACGTT 1 cut(s) 48
AcsI RAATTY 2 cut(s) 141, 221
AfiI CCNNNNNNNGG 2 cut(s) 16, 113
AgsI TTSAA 2 cut(s) 46, 256
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw21I GWGCWC 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 1 cut(s) 84
ApoI RAATTY 2 cut(s) 141, 221
AseI ATTAAT 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 1 cut(s) 244
AxyI CCTNAGG 1 cut(s) 11
BanII GRGCYC 2 cut(s) 77, 136
Bbv12I GWGCWC 1 cut(s) 121
BccI CCATC 1 cut(s) 232
BceAI ACGGC 2 cut(s) 33, 71
BciT130I CCWGG 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 3 cut(s) 76, 245, 246
BmrFI CCNGG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 113
Bse21I CCTNAGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 16, 113
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 42, 74
BshFI GGCC 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 120
BslFI GGGAC 2 cut(s) 53, 230
BslI CCNNNNNNNGG 2 cut(s) 16, 113
BsmFI GGGAC 2 cut(s) 53, 230
BsnI GGCC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 3 cut(s) 77, 121, 136
BspACI CCGC 2 cut(s) 78, 187
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 2 cut(s) 41, 73
BspLI GGNNCC 3 cut(s) 76, 245, 246
BsrDI GCAATG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 4 cut(s) 11, 28, 60, 137
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
Bsu36I CCTNAGG 1 cut(s) 11
BsuRI GGCC 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 244
CviJI RGCY 8 cut(s) 32, 75, 86, 125, 129, 134, 166, 218
CviKI_1 RGCY 8 cut(s) 32, 75, 86, 125, 129, 134, 166, 218
DdeI CTNAG 4 cut(s) 11, 28, 60, 137
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
EciI GGCGGA 2 cut(s) 67, 176
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 2 cut(s) 77, 136
Eco47I GGWCC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 2 cut(s) 77, 136
ErhI CCWWGG 1 cut(s) 81
FaqI GGGAC 2 cut(s) 53, 230
FriOI GRGCYC 2 cut(s) 77, 136
HaeIII GGCC 1 cut(s) 86
HinfI GANTC 1 cut(s) 26
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 48
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 4 cut(s) 11, 28, 60, 137
HpySE526I ACGT 1 cut(s) 48
KflI GGGWCCC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 6 cut(s) 22, 23, 78, 105, 139, 144
MaeII ACGT 1 cut(s) 48
MboII GAAGA 4 cut(s) 45, 147, 198, 205
MhlI GDGCHC 3 cut(s) 77, 121, 136
MluCI AATT 3 cut(s) 141, 174, 221
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 4 cut(s) 6, 64, 69, 117
MseI TTAA 2 cut(s) 173, 213
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 131
NlaIV GGNNCC 3 cut(s) 76, 245, 246
NmeAIII GCCGAG 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 173
Psp1406I AACGTT 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 3 cut(s) 76, 245, 246
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PspXI VCTCGAGB 1 cut(s) 120
SaqAI TTAA 2 cut(s) 173, 213
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 3 cut(s) 77, 121, 136
SetI ASST 3 cut(s) 12, 51, 220
Sfr274I CTCGAG 1 cut(s) 120
SinI GGWCC 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 68, 120
SmoI CTYRAG 2 cut(s) 68, 120
Sse9I AATT 3 cut(s) 141, 174, 221
SsiI CCGC 2 cut(s) 78, 187
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 121
TasI AATT 3 cut(s) 141, 174, 221
Tru1I TTAA 2 cut(s) 173, 213
Tru9I TTAA 2 cut(s) 173, 213
VpaK11BI GGWCC 1 cut(s) 244
VspI ATTAAT 1 cut(s) 173
XapI RAATTY 2 cut(s) 141, 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.