Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003647

Physical Location & Seq

Genomic Coordinates Reverse (-)

17994824 .. 17997012

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1159100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCGGAAAACGGCGGCGTTTCAGGGGGCCAACGTCTTCATGTCGCGGAACCTGGTCCCGCCCGAGATGTTCGACGCTCTTCACGACGCGCTTAAGCACAACGGCGCCAATGTCTTCCTCTGCTGCGACCCTTCTCGCACCGCCCCCAACGACTACCACGTCATCGAGTCCTCCGATCACGTTTGTGTGAAGTTTGAGGATCTTAGAGCCAAAGGTTGCAATTTGCTAGGTCCTCAATGCGTGTTTGCTTGTGCGAGTGAGCATAGGGCTCTGCCTAAACAAGGGTTTACTTGTTGCCTTGCAATGGATGGTTCCAAAGTACTTGCGTCGGGTTTTCAGGGGGATGAAAAGATTAAGATAGAGAAGTTAGTAACAGCAATGGGGGGAGTTTTGCAAACGCAAACATCATCGGATGTTAACTTTGTCATTGTGAAGAATGTATTGGCTGGAAAATACAAGTGGGCTTTAAATACTTTGAAGAAGCCAATTGTCACGGTTAATTGGTTATATCAGTGCTGGAAAGAGCATCGCACTGTGTCTCAAGATTCATTTAGGGTTCTTCCTTTTTCTGGGCTGACAATCTCTGTAACCAGAATTCCAGCAGATGAGCGAAAGAAGATTGAAAAGCTTATCATAGAAAATGGTGGAAAATATTCTGCTGAACTAACAAAGAAGTGCACGCATTTAATTTCTGATATATCCTTTTGGGGTTCGAAGATGAAGACAACTTTTTTGCATTGTATGTGTTATTTTATTTCTTCATATCCTCATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000785 GO:0001932 GO:0001934 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009893 GO:0009987 GO:0010556 GO:0010562 GO:0010604 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022402 GO:0022607 GO:0030174 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031570 GO:0032268 GO:0032270 GO:0033036 GO:0033135 GO:0033138 GO:0033260 GO:0033365 GO:0033554 GO:0033674 GO:0034502 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0035561 GO:0035563 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044786 GO:0045786 GO:0045859 GO:0045860 GO:0045937 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051098 GO:0051099 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051641 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070727 GO:0071163 GO:0071165 GO:0071168 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

BRCT BRCT_2 PTCB-BRCT

Protein Analysis

259

Amino Acids

28.86

Weight (kDa)

8.95

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	107 - 173	2e-08	BRCA1 C Terminus (BRCT) domain
PTCB-BRCT	PF12738	107 - 168	4.4e-08	twin BRCT domain
BRCT	PF00533	186 - 240	8.2e-11	BRCA1 C Terminus (BRCT) domain
PTCB-BRCT	PF12738	192 - 232	1.1e-11	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77320 AT1G77320 AT1G77320
fragaria_vesca	FvH4_2g27821 FvH4_2g27821 FvH4_2g27821 FvH4_2g27821 FvH4_2g27821
malus_domestica	MD08G1159000.v1.1 MD08G1159100.v1.1
prunus_persica	Prupe.1G489800_v2.0.a1
pyrus_communis	pycom348g00050 pycom348g00060
rosa_chinensis	RchiOBHm_Chr6g0296681 RchiOBHm_Chr6g0296691 RchiOBHm_Chr7g0211681
rosa_laevigata	RLG00000011670 RLG00000019186 RLG00000030023
rosa_multiflora	Rmu_co8128350.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092010 Rroxscaffold_5G00341250 Rroxscaffold_7G00171260
rosa_rugosa	Rorug06G0264200 Rorug06G0264300 Rorug06G0264400.1 Rorug06G0264500
rosa_samantha	Rh4CG165900 Rh6AG376000 Rh6BG384300 Rh6CG389400 Rh6DG376800 Rh7CG482500 Rh7DG451300
rosa_wichuraiana	Rw6G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	104
AccII	CGCG	2 cut(s)	46, 89
AciI	CCGC	5 cut(s)	4, 14, 46, 59, 141
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	594
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	3 cut(s)	281, 304, 569
AflII	CTTAAG	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	478, 623
AjiI	CACGTC	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AleI	CACNNNNGTG	1 cut(s)	183
AluBI	AGCT	1 cut(s)	628
AluI	AGCT	1 cut(s)	628
Alw21I	GWGCWC	1 cut(s)	680
Alw26I	GTCTC	1 cut(s)	543
Alw44I	GTGCAC	1 cut(s)	676
AlwI	GGATC	1 cut(s)	207
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	27
ApaLI	GTGCAC	1 cut(s)	676
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	594
ArsI	GACNNNNNNTTYG	2 cut(s)	715, 747
Asp700I	GAANNNNTTC	1 cut(s)	652
AspLEI	GCGC	2 cut(s)	91, 107
AspS9I	GGNCC	3 cut(s)	27, 55, 230
AsuII	TTCGAA	1 cut(s)	713
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	55, 230
BaeGI	GKGCMC	1 cut(s)	680
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	271
BbsI	GAAGAC	3 cut(s)	28, 106, 728
Bbv12I	GWGCWC	1 cut(s)	680
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	2 cut(s)	27, 118
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	92
BisI	GCNGC	2 cut(s)	15, 124
BlsI	GCNGC	2 cut(s)	16, 125
BmcAI	AGTACT	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	2 cut(s)	55, 230
BmeT110I	CYCGRG	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	3 cut(s)	27, 55, 230
BmiI	GGNNCC	5 cut(s)	28, 50, 57, 106, 313
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	535
BpiI	GAAGAC	3 cut(s)	28, 106, 728
Bpu14I	TTCGAA	1 cut(s)	713
BpuEI	CTTGAG	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 304, 569
Bse3DI	GCAATG	2 cut(s)	309, 384
BseBI	CCWGG	1 cut(s)	53
BseGI	GGATG	3 cut(s)	313, 349, 418
BseLI	CCNNNNNNNGG	3 cut(s)	281, 304, 569
BseMI	GCAATG	2 cut(s)	309, 384
BseSI	GKGCMC	1 cut(s)	680
BseXI	GCAGC	1 cut(s)	110
Bsh1236I	CGCG	2 cut(s)	46, 89
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	680
BsiHKCI	CYCGRG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	3 cut(s)	281, 304, 569
BsmAI	GTCTC	1 cut(s)	543
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	62
Bsp119I	TTCGAA	1 cut(s)	713
Bsp1286I	GDGCHC	2 cut(s)	271, 680
Bsp143I	GATC	2 cut(s)	175, 199
BspACI	CCGC	5 cut(s)	4, 14, 46, 59, 141
BspANI	GGCC	1 cut(s)	29
BspFNI	CGCG	2 cut(s)	46, 89
BspLI	GGNNCC	5 cut(s)	28, 50, 57, 106, 313
BspPI	GGATC	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	104
BspTI	CTTAAG	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	309, 384
BssMI	GATC	2 cut(s)	175, 199
BssNI	GRCGYC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	496, 535
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	713
BstC8I	GCNNGC	1 cut(s)	680
BstDEI	CTNAG	1 cut(s)	203
BstENI	CCTNNNNNAGG	1 cut(s)	279
BstF5I	GGATG	3 cut(s)	313, 349, 418
BstFNI	CGCG	2 cut(s)	46, 89
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	91, 107
BstKTI	GATC	2 cut(s)	178, 202
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	2 cut(s)	175, 199
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	680
BstUI	CGCG	2 cut(s)	46, 89
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	3 cut(s)	28, 106, 728
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	512
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	313, 349, 418
BtsIMutI	CAGTG	2 cut(s)	518, 531
Cac8I	GCNNGC	1 cut(s)	680
CfoI	GCGC	2 cut(s)	91, 107
Cfr13I	GGNCC	3 cut(s)	27, 55, 230
CseI	GACGC	3 cut(s)	83, 95, 315
CsiI	ACCWGGT	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	8 cut(s)	29, 209, 269, 446, 464, 484, 574, 628
CviKI_1	RGCY	8 cut(s)	29, 209, 269, 446, 464, 484, 574, 628
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	1 cut(s)	203
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	2 cut(s)	177, 201
DpnII	GATC	2 cut(s)	175, 199
DraI	TTTAAA	1 cut(s)	468
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	55, 230
Eco88I	CYCGRG	1 cut(s)	62
EcoNI	CCTNNNNNAGG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	271
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
FaeI	CATG	1 cut(s)	43
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	1 cut(s)	39
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	15, 124
FokI	GGATG	3 cut(s)	320, 356, 425
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	2 cut(s)	15, 124
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	2 cut(s)	90, 106
GluI	GCNGC	2 cut(s)	15, 124
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	29
HgaI	GACGC	3 cut(s)	83, 95, 315
HhaI	GCGC	2 cut(s)	91, 107
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	2 cut(s)	89, 105
HinP1I	GCGC	2 cut(s)	89, 105
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	2 cut(s)	167, 545
HpaI	GTTAAC	1 cut(s)	418
Hpy166II	GTNNAC	3 cut(s)	288, 418, 678
Hpy188I	TCNGA	3 cut(s)	175, 412, 694
Hpy188III	TCNNGA	2 cut(s)	83, 542
Hpy8I	GTNNAC	3 cut(s)	288, 418, 678
Hpy99I	CGWCG	3 cut(s)	77, 89, 331
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	2 cut(s)	496, 535
HpyCH4IV	ACGT	3 cut(s)	33, 159, 180
HpyCH4V	TGCA	5 cut(s)	219, 302, 394, 678, 736
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	3 cut(s)	33, 159, 180
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	2 cut(s)	89, 105
KasI	GGCGCC	1 cut(s)	104
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	175, 199
LguI	GCTCTTC	1 cut(s)	84
LpnPI	CCDG	9 cut(s)	8, 38, 65, 323, 432, 502, 555, 604, 612
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	535
MabI	ACCWGGT	1 cut(s)	51
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	3 cut(s)	33, 159, 180
MaeIII	GTNAC	3 cut(s)	370, 490, 586
MalI	GATC	2 cut(s)	177, 201
MboI	GATC	2 cut(s)	175, 199
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	271, 680
MluCI	AATT	5 cut(s)	220, 486, 499, 594, 687
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	128, 181, 190, 243, 777
MroXI	GAANNNNTTC	1 cut(s)	652
MseI	TTAA	6 cut(s)	93, 354, 417, 467, 498, 686
MslI	CAYNNNNRTG	1 cut(s)	183
MspCI	CTTAAG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	2 cut(s)	46, 89
NarI	GGCGCC	1 cut(s)	105
NdeII	GATC	2 cut(s)	175, 199
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	5 cut(s)	28, 50, 57, 106, 313
NmuCI	GTSAC	1 cut(s)	490
NspV	TTCGAA	1 cut(s)	713
OliI	CACNNNNGTG	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 156, 171
PdmI	GAANNNNTTC	1 cut(s)	652
PfeI	GAWTC	1 cut(s)	545
PkrI	GCNGC	2 cut(s)	16, 125
PleI	GAGTC	1 cut(s)	175
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	5 cut(s)	28, 50, 57, 106, 313
PspPI	GGNCC	3 cut(s)	27, 55, 230
PspPPI	RGGWCCY	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	6 cut(s)	93, 354, 417, 467, 498, 686
SatI	GCNGC	2 cut(s)	15, 124
Sau3AI	GATC	2 cut(s)	175, 199
Sau96I	GGNCC	3 cut(s)	27, 55, 230
ScaI	AGTACT	1 cut(s)	321
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	271, 680
SetI	ASST	7 cut(s)	36, 54, 162, 183, 217, 232, 630
SexAI	ACCWGGT	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	535
SfoI	GGCGCC	1 cut(s)	106
SfuI	TTCGAA	1 cut(s)	713
SinI	GGWCC	2 cut(s)	55, 230
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	2 cut(s)	92, 540
SmoI	CTYRAG	2 cut(s)	92, 540
Sse9I	AATT	5 cut(s)	220, 486, 499, 594, 687
SsiI	CCGC	5 cut(s)	4, 14, 46, 59, 141
SspDI	GGCGCC	1 cut(s)	104
SspI	AATATT	1 cut(s)	653
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	496, 535
TaiI	ACGT	3 cut(s)	36, 162, 183
TaqI	TCGA	3 cut(s)	72, 165, 713
TasI	AATT	5 cut(s)	220, 486, 499, 594, 687
TatI	WGTACW	1 cut(s)	319
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	6 cut(s)	93, 354, 417, 467, 498, 686
Tru9I	TTAA	6 cut(s)	93, 354, 417, 467, 498, 686
TscAI	CASTG	2 cut(s)	518, 538
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	5 cut(s)	28, 360, 537, 734, 750
TspRI	CASTG	2 cut(s)	518, 538
Vha464I	CTTAAG	1 cut(s)	92
VneI	GTGCAC	1 cut(s)	676
VpaK11BI	GGWCC	2 cut(s)	55, 230
XagI	CCTNNNNNAGG	1 cut(s)	279
XapI	RAATTY	1 cut(s)	594
XmnI	GAANNNNTTC	1 cut(s)	652
XspI	CTAG	1 cut(s)	227
ZrmI	AGTACT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.