Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8128350.1

Orthogroup ID

OG0003647

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 615

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8128350.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 373 bp

atgcttccaacattttcttgtgcccctttatcttgtaaagagggggatatcaaagtccctcccttggaatcaaaatgtgaggtgacccttgaagattgtgttgctgatgattctcagtctgaagacaatgacctgtacttgtcagaatgtaaaatatcacttgttggcttcgaagcttctgaaatgcgtagattggttaatattattcgcagaggtgggggctcccgttatatgtcattcaatgacaggttgacacacatagtagttggaactccttctgaaatagccacctggcttgaagattgtgatcgtgagaagaaagagataccagttctccagaggcacagtgcctgtgatatacttctccctaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000785 GO:0001932 GO:0001934 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009893 GO:0009987 GO:0010556 GO:0010562 GO:0010604 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022402 GO:0022607 GO:0030174 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031570 GO:0032268 GO:0032270 GO:0033036 GO:0033135 GO:0033138 GO:0033260 GO:0033365 GO:0033554 GO:0033674 GO:0034502 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0035561 GO:0035563 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044786 GO:0045786 GO:0045859 GO:0045860 GO:0045937 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051098 GO:0051099 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051641 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070727 GO:0071163 GO:0071165 GO:0071168 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

BRCT BRCT_2 PTCB-BRCT

Protein Analysis

124

Amino Acids

13.9

Weight (kDa)

4.81

Isoelectric Point (pI)

81.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77320 AT1G77320 AT1G77320
fragaria_vesca	FvH4_2g27821 FvH4_2g27821 FvH4_2g27821 FvH4_2g27821 FvH4_2g27821
malus_domestica	MD08G1159000.v1.1 MD08G1159100.v1.1
prunus_persica	Prupe.1G489800_v2.0.a1
pyrus_communis	pycom348g00050 pycom348g00060
rosa_chinensis	RchiOBHm_Chr6g0296681 RchiOBHm_Chr6g0296691 RchiOBHm_Chr7g0211681
rosa_laevigata	RLG00000011670 RLG00000019186 RLG00000030023
rosa_multiflora	Rmu_co8128350.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092010 Rroxscaffold_5G00341250 Rroxscaffold_7G00171260
rosa_rugosa	Rorug06G0264200 Rorug06G0264300 Rorug06G0264400.1 Rorug06G0264500
rosa_samantha	Rh4CG165900 Rh6AG376000 Rh6BG384300 Rh6CG389400 Rh6DG376800 Rh7CG482500 Rh7DG451300
rosa_wichuraiana	Rw6G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	92, 241, 299
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	329
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	41
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	25, 224
Bsp143I	GATC	1 cut(s)	307
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	223
BspT104I	TTCGAA	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	114
BstEII	GGTNACC	1 cut(s)	82
BstKTI	GATC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	307
BstNI	CCWGG	1 cut(s)	292
BstPI	GGTNACC	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	290
BstSLI	GKGCMC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	352
CaiI	CAGNNNCTG	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	136
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviJI	RGCY	5 cut(s)	168, 176, 222, 287, 295
CviKI_1	RGCY	5 cut(s)	168, 176, 222, 287, 295
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	141
Eco91I	GGTNACC	1 cut(s)	82
EcoO65I	GGTNACC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	290
EcoRV	GATATC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	63
FaiI	YATR	4 cut(s)	231, 233, 260, 359
FaqI	GGGAC	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	2 cut(s)	68, 110
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	4 cut(s)	121, 145, 181, 280
Hpy188III	TCNNGA	2 cut(s)	311, 337
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	7 cut(s)	146, 232, 277, 304, 342, 350, 364
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	4 cut(s)	104, 134, 311, 328
MhlI	GDGCHC	2 cut(s)	25, 224
MmeI	TCCRAC	2 cut(s)	32, 247
MnlI	CCTC	5 cut(s)	34, 69, 73, 206, 333
MroXI	GAANNNNTTC	1 cut(s)	274
MseI	TTAA	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	292
NdeII	GATC	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	82
NspV	TTCGAA	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	68, 110
Psp6I	CCWGG	1 cut(s)	290
PspEI	GGTNACC	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	351
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	292
SduI	GDGCHC	2 cut(s)	25, 224
SetI	ASST	6 cut(s)	84, 135, 178, 217, 251, 293
SfuI	TTCGAA	1 cut(s)	171
SspI	AATATT	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	171
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	68, 110
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspRI	CASTG	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.