Rroxscaffold_5G00341250

DNA topoisomerase 2-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003647
Physical Location & Seq
Forward (+)
9798047 .. 9799442
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341250.1

Sequence Viewer

Length: 330 bp
ATGTGCTTCTATGGTCGGACAGGTCCGCAATGTGTGTTTTCTTGTGCAAACGAGCATAGGTCGCTGCCTAAACAAAAGTTTACTTGTTGCCTAGCATTGGATGGTGTTAATGTACTTGCCTCTGGTTTTGAGGCAGATGAAAAGTGGGCTGTAAATACATTGAAGAAGCCAGTTCTTACTATTAATTGGTTATATCAATGCTACAATGAACATCGCATTGTTGCTCAAGAATCCTTTAGGGTTCTTCCTGTTTCTGGTTTGACGATCTGTGTTACCAGAATTCCATCGGTTTATCTGCTGTTCTTCTGTAAGAAGTGTGTTGTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000785 GO:0001932 GO:0001934 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009893 GO:0009987 GO:0010556 GO:0010562 GO:0010604 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022402 GO:0022607 GO:0030174 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031570 GO:0032268 GO:0032270 GO:0033036 GO:0033135 GO:0033138 GO:0033260 GO:0033365 GO:0033554 GO:0033674 GO:0034502 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0035561 GO:0035563 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044786 GO:0045786 GO:0045859 GO:0045860 GO:0045937 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051098 GO:0051099 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051641 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070727 GO:0071163 GO:0071165 GO:0071168 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT BRCT_2 PTCB-BRCT

Protein Analysis

109

Amino Acids

12.37

Weight (kDa)

8.78

Isoelectric Point (pI)

24.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 279
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 97, 254
AgsI TTSAA 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 279
AseI ATTAAT 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 23
AvaII GGWCC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 51
BccI CCATC 2 cut(s) 95, 292
BfaI CTAG 1 cut(s) 92
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 254
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 35
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 97, 254
BseMI GCAATG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 51
BslI CCNNNNNNNGG 2 cut(s) 97, 254
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 35
BsrI ACTGG 1 cut(s) 170
BssMI GATC 1 cut(s) 264
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 1 cut(s) 267
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 197
BtsCI GGATG 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 113
CviJI RGCY 2 cut(s) 149, 169
CviKI_1 RGCY 2 cut(s) 149, 169
CviQI GTAC 1 cut(s) 113
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 279
FaiI YATR 5 cut(s) 12, 57, 193, 326, 328
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 1 cut(s) 92
GluI GCNGC 1 cut(s) 65
HinfI GANTC 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
Kzo9I GATC 1 cut(s) 264
LpnPI CCDG 6 cut(s) 6, 108, 183, 240, 261, 289
Lsp1109I GCAGC 1 cut(s) 51
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 271
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 3 cut(s) 175, 236, 295
MluCI AATT 2 cut(s) 184, 279
MnlI CCTC 2 cut(s) 124, 130
MseI TTAA 2 cut(s) 108, 183
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeII GATC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 66
PshBI ATTAAT 1 cut(s) 183
PspPI GGNCC 1 cut(s) 23
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 108, 183
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 23
SetI ASST 2 cut(s) 25, 62
SinI GGWCC 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 2 cut(s) 184, 279
SsiI CCGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 92
TasI AATT 2 cut(s) 184, 279
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 108, 183
Tru9I TTAA 2 cut(s) 108, 183
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 153, 222
VpaK11BI GGWCC 1 cut(s) 23
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 1 cut(s) 279
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.