Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003647

Physical Location & Seq

Genomic Coordinates Forward (+)

47956492 .. 47959483

Gene Structure 2992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCTTGACTATTACGGCGTATTGATAGATATCATAGAATTAGACTATTACGATGGTAGGAAAGTACTGCTATTTGAGGGGGATTGGATTGATAGTCGGACTCATAATCGAGGATTGAAAAAGGATGAGTTTGGGTTCATATTGGTTGTTGTGAAGACCAAACCAAAAGACTTTTTTGATATAGGTGTGGACCTTGATCCAAAACCGTACGCACCTCACCAGGTTGTCCATGGACTGAATGACGAGGAAGATGGTAGACTTTCTTTTCCACCGCCACAACCCAAGGTGAGAGCAAACCTGGAGTTCATCCCCAAAGCCGTCCGGTACCGGTTTCAAGATCCAAGCTACTGCAATCGGGAAACCCCCAAATCTCTTCCTTCTCTGTCTCCATTTCAATGTAGAGGCCCTCAATATGAAAAGGTTAAGATAAAGAACTTAGTAACATCAATGGGGGAGTTTTACATACTAAAACATCTTTGGATGTTAACTTTGTCATTGCGAAGAATGTCTTGGCTGCAAAATACAAGGCAATGGGCTGTAAATACATTGAAGAAGCCAGTTCTTACTATTAATTGGATATATCAATGCTGCAATGAACATCGCATTGTTCCTCAAGAATCCTTTAGGGTTCCTCCTGTTTCTGGTTTGACGATCTGTGTTACCAGAATTCCATCAGATGAACGGAAGAAGATTGAAAATCTTATCACAGAAAATGGTGGACATTATTCTGCTGAACTTACAAGGAAGTGCACACATTTGATTTGTGATATATCCTTTGATGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000785 GO:0001932 GO:0001934 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009893 GO:0009987 GO:0010556 GO:0010562 GO:0010604 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022402 GO:0022607 GO:0030174 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031570 GO:0032268 GO:0032270 GO:0033036 GO:0033135 GO:0033138 GO:0033260 GO:0033365 GO:0033554 GO:0033674 GO:0034502 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0035561 GO:0035563 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044786 GO:0045786 GO:0045859 GO:0045860 GO:0045937 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051098 GO:0051099 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051641 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070727 GO:0071163 GO:0071165 GO:0071168 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

BRCT BRCT_2 PTCB-BRCT

Protein Analysis

263

Amino Acids

30.48

Weight (kDa)

8.58

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4216	PF13952	12 - 54	2.5e-07	Domain of unknown function (DUF4216)
BRCT	PF00533	210 - 257	1.5e-09	BRCA1 C Terminus (BRCT) domain
PTCB-BRCT	PF12738	216 - 256	1.5e-13	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77320 AT1G77320 AT1G77320
fragaria_vesca	FvH4_2g27821 FvH4_2g27821 FvH4_2g27821 FvH4_2g27821 FvH4_2g27821
malus_domestica	MD08G1159000.v1.1 MD08G1159100.v1.1
prunus_persica	Prupe.1G489800_v2.0.a1
pyrus_communis	pycom348g00050 pycom348g00060
rosa_chinensis	RchiOBHm_Chr6g0296681 RchiOBHm_Chr6g0296691 RchiOBHm_Chr7g0211681
rosa_laevigata	RLG00000011670 RLG00000019186 RLG00000030023
rosa_multiflora	Rmu_co8128350.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092010 Rroxscaffold_5G00341250 Rroxscaffold_7G00171260
rosa_rugosa	Rorug06G0264200 Rorug06G0264300 Rorug06G0264400.1 Rorug06G0264500
rosa_samantha	Rh4CG165900 Rh6AG376000 Rh6BG384300 Rh6CG389400 Rh6DG376800 Rh7CG482500 Rh7DG451300
rosa_wichuraiana	Rw6G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	256
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	2 cut(s)	191, 332
AcsI	RAATTY	1 cut(s)	666
AfaI	GTAC	3 cut(s)	66, 209, 326
AfiI	CCNNNNNNNGG	1 cut(s)	641
AgeI	ACCGGT	1 cut(s)	327
AgsI	TTSAA	5 cut(s)	118, 335, 395, 550, 695
AjnI	CCWGG	2 cut(s)	219, 297
AjuI	GAANNNNNNNTTGG	2 cut(s)	493, 525
AluBI	AGCT	1 cut(s)	345
AluI	AGCT	1 cut(s)	345
Alw21I	GWGCWC	1 cut(s)	752
Alw26I	GTCTC	1 cut(s)	390
Alw44I	GTGCAC	1 cut(s)	748
AlwI	GGATC	2 cut(s)	191, 332
AoxI	GGCC	1 cut(s)	403
ApaLI	GTGCAC	1 cut(s)	748
ApeKI	GCWGC	2 cut(s)	514, 588
ApoI	RAATTY	1 cut(s)	666
AseI	ATTAAT	1 cut(s)	570
AsiGI	ACCGGT	1 cut(s)	327
Asp718I	GGTACC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	190, 404
AsuHPI	GGTGA	2 cut(s)	209, 298
AvaII	GGWCC	1 cut(s)	190
BaeGI	GKGCMC	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	752
BbvI	GCAGC	2 cut(s)	501, 575
BccI	CCATC	4 cut(s)	47, 245, 679, 773
BceAI	ACGGC	2 cut(s)	31, 302
BciT130I	CCWGG	2 cut(s)	221, 299
BcoDI	GTCTC	1 cut(s)	390
BisI	GCNGC	2 cut(s)	515, 589
BlsI	GCNGC	2 cut(s)	516, 590
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	221, 299
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	190, 404
BmiI	GGNNCC	2 cut(s)	326, 630
BmrFI	CCNGG	2 cut(s)	221, 299
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	597
BsaBI	GATNNNNATC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	229, 282
BsaWI	WCCGGW	2 cut(s)	321, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	3 cut(s)	494, 536, 598
Bse8I	GATNNNNATC	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	221, 299
BseDI	CCNNGG	2 cut(s)	229, 282
BseGI	GGATG	3 cut(s)	130, 306, 486
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseMI	GCAATG	3 cut(s)	494, 536, 598
BseNI	ACTGG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	752
BseXI	GCAGC	2 cut(s)	501, 575
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	1 cut(s)	324
BshTI	ACCGGT	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	752
BsiSI	CCGG	2 cut(s)	322, 328
BsiWI	CGTACG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmAI	GTCTC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	752
Bsp143I	GATC	3 cut(s)	196, 337, 651
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	405
BspLI	GGNNCC	2 cut(s)	326, 630
BspPI	GGATC	2 cut(s)	191, 332
BspT107I	GGYRCC	1 cut(s)	324
BsrDI	GCAATG	3 cut(s)	494, 536, 598
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	229, 282
BssMI	GATC	3 cut(s)	196, 337, 651
BssT1I	CCWWGG	2 cut(s)	229, 282
Bst2UI	CCWGG	2 cut(s)	221, 299
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	436
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	130, 306, 486
BstKTI	GATC	3 cut(s)	199, 340, 654
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	3 cut(s)	196, 337, 651
BstNI	CCWGG	2 cut(s)	221, 299
BstSCI	CCNGG	2 cut(s)	219, 297
BstSLI	GKGCMC	1 cut(s)	752
BstV1I	GCAGC	2 cut(s)	501, 575
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	584
BtsCI	GGATG	3 cut(s)	130, 306, 486
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	190, 404
CsiI	ACCWGGT	1 cut(s)	219
Csp6I	GTAC	3 cut(s)	65, 208, 325
CspAI	ACCGGT	1 cut(s)	327
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	6 cut(s)	317, 345, 405, 514, 536, 556
CviKI_1	RGCY	6 cut(s)	317, 345, 405, 514, 536, 556
CviQI	GTAC	3 cut(s)	65, 208, 325
DdeI	CTNAG	1 cut(s)	436
DpnI	GATC	3 cut(s)	198, 339, 653
DpnII	GATC	3 cut(s)	196, 337, 651
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	2 cut(s)	229, 282
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	666
EcoRII	CCWGG	2 cut(s)	219, 297
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	229, 282
ErhI	CCWWGG	2 cut(s)	229, 282
FaeI	CATG	1 cut(s)	233
FaiI	YATR	9 cut(s)	35, 105, 140, 182, 231, 414, 464, 580, 770
FalI	AAGNNNNNCTT	2 cut(s)	493, 525
FatI	CATG	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	515, 589
FokI	GGATG	3 cut(s)	137, 293, 493
Fsp4HI	GCNGC	2 cut(s)	515, 589
GluI	GCNGC	2 cut(s)	515, 589
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	2 cut(s)	322, 328
Hin1II	CATG	1 cut(s)	233
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	2 cut(s)	100, 617
HpaI	GTTAAC	1 cut(s)	486
HpaII	CCGG	2 cut(s)	322, 328
HphI	GGTGA	2 cut(s)	209, 298
Hpy166II	GTNNAC	5 cut(s)	190, 257, 486, 719, 750
Hpy188I	TCNGA	2 cut(s)	99, 676
Hpy188III	TCNNGA	3 cut(s)	335, 356, 614
Hpy8I	GTNNAC	5 cut(s)	190, 257, 486, 719, 750
HpyAV	CCTTC	1 cut(s)	387
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4V	TGCA	4 cut(s)	351, 517, 591, 750
HpyF3I	CTNAG	1 cut(s)	436
Hsp92II	CATG	1 cut(s)	233
KpnI	GGTACC	1 cut(s)	328
KspAI	GTTAAC	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	196, 337, 651
Lsp1109I	GCAGC	2 cut(s)	501, 575
MabI	ACCWGGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	439, 658
MalI	GATC	3 cut(s)	198, 339, 653
MboI	GATC	3 cut(s)	196, 337, 651
MboII	GAAGA	7 cut(s)	166, 260, 365, 513, 562, 697, 700
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	752
MluCI	AATT	3 cut(s)	38, 571, 666
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	8 cut(s)	70, 104, 225, 238, 395, 417, 621, 642
MseI	TTAA	4 cut(s)	423, 485, 570, 787
MslI	CAYNNNNRTG	1 cut(s)	394
MspI	CCGG	2 cut(s)	322, 328
MspR9I	CCNGG	2 cut(s)	221, 299
MvaI	CCWGG	2 cut(s)	221, 299
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	3 cut(s)	196, 337, 651
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	2 cut(s)	326, 630
PfeI	GAWTC	1 cut(s)	617
Pfl23II	CGTACG	1 cut(s)	207
PinAI	ACCGGT	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	516, 590
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PshBI	ATTAAT	1 cut(s)	570
Psp6I	CCWGG	2 cut(s)	219, 297
PspGI	CCWGG	2 cut(s)	219, 297
PspLI	CGTACG	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	326, 630
PspPI	GGNCC	2 cut(s)	190, 404
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	3 cut(s)	66, 209, 326
RsaNI	GTAC	3 cut(s)	65, 208, 325
RseI	CAYNNNNRTG	1 cut(s)	394
SaqAI	TTAA	4 cut(s)	423, 485, 570, 787
SatI	GCNGC	2 cut(s)	515, 589
Sau3AI	GATC	3 cut(s)	196, 337, 651
Sau96I	GGNCC	2 cut(s)	190, 404
ScaI	AGTACT	1 cut(s)	66
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	221, 299
SduI	GDGCHC	1 cut(s)	752
SetI	ASST	8 cut(s)	187, 195, 217, 225, 288, 300, 347, 423
SexAI	ACCWGGT	1 cut(s)	219
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	394
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	3 cut(s)	38, 571, 666
SsiI	CCGC	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	219, 297
StyI	CCWWGG	2 cut(s)	229, 282
TaaI	ACNGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	109
TasI	AATT	3 cut(s)	38, 571, 666
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	617
Tru1I	TTAA	4 cut(s)	423, 485, 570, 787
Tru9I	TTAA	4 cut(s)	423, 485, 570, 787
TseI	GCWGC	2 cut(s)	514, 588
TspDTI	ATGAA	5 cut(s)	127, 295, 429, 609, 693
TspGWI	ACGGA	1 cut(s)	697
VneI	GTGCAC	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	1 cut(s)	666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	256
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.