Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003647

Physical Location & Seq

Genomic Coordinates Forward (+)

28787300 .. 28788111

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18937

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGGGGAGTTTTACATACTAAAACATCTTTGGATGTTAGCTTTGTCATTGCGAAGAATGCCTTGGCTGCAAAATACAAGTGGGCTGTAAATACATTGAAGAAGCCAGTTCTTACTATTAATTGGTTATATCAATGCTGCAATGAACATCGCATTGTTCCTCAAGAATCCTTTAGGGTTGTTCCTGTTTCTGGTTTGACGATCTGTGTTACCAGAATTCCATCAGATGAACGGAAGAAGATTGAAAATCTTATCACAGAAAATGGTGGACATTATTCTGCTGAACTTACAAGGAAGTGCACACATTTGATTTGTGATATATCCTTTTATGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000785 GO:0001932 GO:0001934 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009893 GO:0009987 GO:0010556 GO:0010562 GO:0010604 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022402 GO:0022607 GO:0030174 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031570 GO:0032268 GO:0032270 GO:0033036 GO:0033135 GO:0033138 GO:0033260 GO:0033365 GO:0033554 GO:0033674 GO:0034502 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0035561 GO:0035563 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044786 GO:0045786 GO:0045859 GO:0045860 GO:0045937 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051098 GO:0051099 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051641 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070727 GO:0071163 GO:0071165 GO:0071168 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

BRCT BRCT_2 PTCB-BRCT

Protein Analysis

112

Amino Acids

12.56

Weight (kDa)

9.06

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	64 - 106	1.1e-09	BRCA1 C Terminus (BRCT) domain
PTCB-BRCT	PF12738	66 - 106	2.9e-14	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77320 AT1G77320 AT1G77320
fragaria_vesca	FvH4_2g27821 FvH4_2g27821 FvH4_2g27821 FvH4_2g27821 FvH4_2g27821
malus_domestica	MD08G1159000.v1.1 MD08G1159100.v1.1
prunus_persica	Prupe.1G489800_v2.0.a1
pyrus_communis	pycom348g00050 pycom348g00060
rosa_chinensis	RchiOBHm_Chr6g0296681 RchiOBHm_Chr6g0296691 RchiOBHm_Chr7g0211681
rosa_laevigata	RLG00000011670 RLG00000019186 RLG00000030023
rosa_multiflora	Rmu_co8128350.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092010 Rroxscaffold_5G00341250 Rroxscaffold_7G00171260
rosa_rugosa	Rorug06G0264200 Rorug06G0264300 Rorug06G0264400.1 Rorug06G0264500
rosa_samantha	Rh4CG165900 Rh6AG376000 Rh6BG384300 Rh6CG389400 Rh6DG376800 Rh7CG482500 Rh7DG451300
rosa_wichuraiana	Rw6G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	100, 245
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
Alw21I	GWGCWC	1 cut(s)	302
Alw44I	GTGCAC	1 cut(s)	298
ApaLI	GTGCAC	1 cut(s)	298
ApeKI	GCWGC	2 cut(s)	68, 138
ApoI	RAATTY	1 cut(s)	216
AseI	ATTAAT	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	55, 125
BccI	CCATC	1 cut(s)	229
BisI	GCNGC	2 cut(s)	69, 139
BlsI	GCNGC	2 cut(s)	70, 140
BpuEI	CTTGAG	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	107
Bse3DI	GCAATG	2 cut(s)	48, 148
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMI	GCAATG	2 cut(s)	48, 148
BseNI	ACTGG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	55, 125
BsiHKAI	GWGCWC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	201
BsrDI	GCAATG	2 cut(s)	48, 148
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 68
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	55, 125
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	40
CviJI	RGCY	4 cut(s)	42, 68, 86, 106
CviKI_1	RGCY	4 cut(s)	42, 68, 86, 106
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaiI	YATR	4 cut(s)	18, 130, 320, 330
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
Fnu4HI	GCNGC	2 cut(s)	69, 139
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	69, 139
GluI	GCNGC	2 cut(s)	69, 139
HinfI	GANTC	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	269, 300
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	2 cut(s)	269, 300
HpyCH4V	TGCA	3 cut(s)	71, 141, 300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 68
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	4 cut(s)	120, 177, 198, 226
Lsp1109I	GCAGC	2 cut(s)	55, 125
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	4 cut(s)	67, 112, 247, 250
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	2 cut(s)	121, 216
MnlI	CCTC	1 cut(s)	171
MseI	TTAA	2 cut(s)	120, 337
Mva1269I	GAATGC	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	59, 68
NdeII	GATC	1 cut(s)	201
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	70, 140
PshBI	ATTAAT	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	120, 337
SatI	GCNGC	2 cut(s)	69, 139
Sau3AI	GATC	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	1 cut(s)	44
SgeI	CNNG	8 cut(s)	76, 91, 119, 176, 197, 204, 225, 303
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	2 cut(s)	121, 216
StyI	CCWWGG	1 cut(s)	63
TasI	AATT	2 cut(s)	121, 216
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	120, 337
Tru9I	TTAA	2 cut(s)	120, 337
TseI	GCWGC	2 cut(s)	68, 138
TspDTI	ATGAA	2 cut(s)	159, 243
TspGWI	ACGGA	1 cut(s)	247
VneI	GTGCAC	1 cut(s)	298
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.