Rh7CG482500

DNA topoisomerase 2-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003647
Physical Location & Seq
Reverse (-)
64885154 .. 64888890
3737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG482500.1

Sequence Viewer

Length: 684 bp
ATGAGTGGCGCCACCGGAGATGAGCCGATAAGCTGGATCAACGACGTTGGACAACCAACGCTTCCGTCGCTCGGTTTGGTGAGAGCAAACCTGGAGTTCATCCCCAAAGCCGTCCGGTACCGGTTTCAAGACTCAAGCTACTGCAATCGGGAAACCCCCAAATCTCTTCCTTCTCTGTCTCCATTTCAATGTAGAGGTCCTCAATGCGTGTTTTCTTGTGCGAACGAGCATAGGTCGCTGCCTAAACAAAAGTTTACTTGTTGCCTAGCATTGGATGGTGTCAATGTACTTGCCTCTGGTTTTGAGGCAGATGAAAAGGTTAAGATAAAGAACTTAGTAACATCAATGGGGGGAGTTTTACATACTAAAACATCTTTGGATGTTAGCTTTGTCATTGTGAAGAATGTCTTGGCTGCAAAATACGAGTGGGCTGTAAATACATTGAAGAAGCCAGTTCTTACTATTAATTGGTTATATCAATGCTGCAATGAACATCGCATTGTTCCTCAAGAATCCTTTAGGGTTCTTCCTGTTTATGGTTTGACGATCTGTGTTACCAGAATTCCATCAGATGAACGGAAGAAGATTGAAAATCTTATCACAGAAAATGGTGGACATTATTCTGCTGAACTTACAAGGAAGTGCACACATTTGATTTGTGATATATCCTTTTATGGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000785 GO:0001932 GO:0001934 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009893 GO:0009987 GO:0010556 GO:0010562 GO:0010604 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022402 GO:0022607 GO:0030174 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031570 GO:0032268 GO:0032270 GO:0033036 GO:0033135 GO:0033138 GO:0033260 GO:0033365 GO:0033554 GO:0033674 GO:0034502 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0035561 GO:0035563 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044786 GO:0045786 GO:0045859 GO:0045860 GO:0045937 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051098 GO:0051099 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051641 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070727 GO:0071163 GO:0071165 GO:0071168 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT BRCT_2 PTCB-BRCT

Protein Analysis

227

Amino Acids

25.32

Weight (kDa)

8.61

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTCB-BRCT PF12738 96 - 157 7.2e-07 twin BRCT domain
BRCT PF00533 177 - 221 3.8e-09 BRCA1 C Terminus (BRCT) domain
PTCB-BRCT PF12738 181 - 221 1.2e-13 twin BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 117
AccB1I GGYRCC 2 cut(s) 8, 117
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 561
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 2 cut(s) 119, 288
AfiI CCNNNNNNNGG 3 cut(s) 71, 271, 536
AgeI ACCGGT 1 cut(s) 120
AgsI TTSAA 4 cut(s) 128, 188, 445, 590
AjnI CCWGG 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 3 cut(s) 33, 138, 387
AluI AGCT 3 cut(s) 33, 138, 387
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 1 cut(s) 183
Alw44I GTGCAC 1 cut(s) 643
AlwI GGATC 1 cut(s) 44
ApaLI GTGCAC 1 cut(s) 643
ApeKI GCWGC 3 cut(s) 238, 413, 483
ApoI RAATTY 1 cut(s) 561
AseI ATTAAT 1 cut(s) 465
AsiGI ACCGGT 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 647
BanI GGYRCC 2 cut(s) 8, 117
Bbv12I GWGCWC 1 cut(s) 647
BbvI GCAGC 3 cut(s) 225, 400, 470
BccI CCATC 2 cut(s) 269, 574
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 3 cut(s) 239, 414, 484
BlsI GCNGC 3 cut(s) 240, 415, 485
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 10, 119
BmrFI CCNGG 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 113
BpuEI CTTGAG 2 cut(s) 118, 492
BsaHI GRCGYC 1 cut(s) 9
BsaWI WCCGGW 3 cut(s) 14, 114, 120
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 271, 536
Bse118I RCCGGY 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 493
BseBI CCWGG 1 cut(s) 92
BseGI GGATG 3 cut(s) 99, 280, 385
BseLI CCNNNNNNNGG 3 cut(s) 71, 271, 536
BseMI GCAATG 1 cut(s) 493
BseNI ACTGG 1 cut(s) 452
BseSI GKGCMC 1 cut(s) 647
BseXI GCAGC 3 cut(s) 225, 400, 470
BshNI GGYRCC 2 cut(s) 8, 117
BshTI ACCGGT 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 647
BsiSI CCGG 3 cut(s) 15, 115, 121
BslI CCNNNNNNNGG 3 cut(s) 71, 271, 536
BsmAI GTCTC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 647
Bsp143I GATC 2 cut(s) 36, 546
BspLI GGNNCC 2 cut(s) 10, 119
BspPI GGATC 1 cut(s) 44
BspT107I GGYRCC 2 cut(s) 8, 117
BsrDI GCAATG 1 cut(s) 493
BsrFI RCCGGY 1 cut(s) 120
BsrI ACTGG 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 120
BssMI GATC 2 cut(s) 36, 546
BssNI GRCGYC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 171
BstACI GRCGYC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 334
BstF5I GGATG 3 cut(s) 99, 280, 385
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 2 cut(s) 39, 549
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 2 cut(s) 36, 546
BstMWI GCNNNNNNNGC 2 cut(s) 67, 235
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 647
BstV1I GCAGC 3 cut(s) 225, 400, 470
BtgZI GCGATG 1 cut(s) 479
BtsCI GGATG 3 cut(s) 99, 280, 385
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 118, 287
CspAI ACCGGT 1 cut(s) 120
CviJI RGCY 8 cut(s) 25, 33, 110, 138, 387, 413, 431, 451
CviKI_1 RGCY 8 cut(s) 25, 33, 110, 138, 387, 413, 431, 451
CviQI GTAC 2 cut(s) 118, 287
DdeI CTNAG 1 cut(s) 334
DinI GGCGCC 1 cut(s) 10
DpnI GATC 2 cut(s) 38, 548
DpnII GATC 2 cut(s) 36, 546
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 90
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
FaiI YATR 6 cut(s) 231, 363, 475, 537, 665, 675
FalI AAGNNNNNCTT 2 cut(s) 392, 424
Fnu4HI GCNGC 3 cut(s) 239, 414, 484
FokI GGATG 3 cut(s) 86, 287, 392
Fsp4HI GCNGC 3 cut(s) 239, 414, 484
FspBI CTAG 1 cut(s) 266
GlaI GCGC 1 cut(s) 10
GluI GCNGC 3 cut(s) 239, 414, 484
GsuI CTGGAG 1 cut(s) 113
HaeII RGCGCY 1 cut(s) 12
HapII CCGG 3 cut(s) 15, 115, 121
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 9
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 2 cut(s) 131, 512
HpaII CCGG 3 cut(s) 15, 115, 121
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 3 cut(s) 255, 614, 645
Hpy188I TCNGA 1 cut(s) 571
Hpy188III TCNNGA 3 cut(s) 128, 149, 509
Hpy8I GTNNAC 3 cut(s) 255, 614, 645
Hpy99I CGWCG 2 cut(s) 47, 70
HpyAV CCTTC 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 4 cut(s) 144, 416, 486, 645
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 235
HpyF3I CTNAG 1 cut(s) 334
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 9
HspAI GCGC 1 cut(s) 9
KasI GGCGCC 1 cut(s) 8
KpnI GGTACC 1 cut(s) 121
Kzo9I GATC 2 cut(s) 36, 546
Lsp1109I GCAGC 3 cut(s) 225, 400, 470
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 2 cut(s) 337, 553
MalI GATC 2 cut(s) 38, 548
MboI GATC 2 cut(s) 36, 546
MboII GAAGA 6 cut(s) 158, 412, 457, 518, 592, 595
MhlI GDGCHC 1 cut(s) 647
MluCI AATT 2 cut(s) 466, 561
Mly113I GGCGCC 1 cut(s) 9
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 5 cut(s) 188, 210, 298, 304, 516
MseI TTAA 3 cut(s) 321, 465, 682
MslI CAYNNNNRTG 1 cut(s) 187
MspI CCGG 3 cut(s) 15, 115, 121
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 67, 235
NarI GGCGCC 1 cut(s) 9
NdeII GATC 2 cut(s) 36, 546
NlaIV GGNNCC 2 cut(s) 10, 119
PfeI GAWTC 1 cut(s) 512
PinAI ACCGGT 1 cut(s) 120
PkrI GCNGC 3 cut(s) 240, 415, 485
PleI GAGTC 1 cut(s) 125
PluTI GGCGCC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 10, 119
PspPI GGNCC 1 cut(s) 197
PspPPI RGGWCCY 1 cut(s) 197
RsaI GTAC 2 cut(s) 119, 288
RsaNI GTAC 2 cut(s) 118, 287
RseI CAYNNNNRTG 1 cut(s) 187
SaqAI TTAA 3 cut(s) 321, 465, 682
SatI GCNGC 3 cut(s) 239, 414, 484
Sau3AI GATC 2 cut(s) 36, 546
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 647
SetI ASST 8 cut(s) 35, 48, 93, 140, 199, 236, 321, 389
SfoI GGCGCC 1 cut(s) 10
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 187
SmlI CTYRAG 2 cut(s) 133, 507
SmoI CTYRAG 2 cut(s) 133, 507
Sse9I AATT 2 cut(s) 466, 561
SspDI GGCGCC 1 cut(s) 8
SspMI CTAG 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 48
TasI AATT 2 cut(s) 466, 561
TatI WGTACW 1 cut(s) 286
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 3 cut(s) 321, 465, 682
Tru9I TTAA 3 cut(s) 321, 465, 682
TseI GCWGC 3 cut(s) 238, 413, 483
TspDTI ATGAA 4 cut(s) 88, 327, 504, 588
TspGWI ACGGA 2 cut(s) 54, 592
VneI GTGCAC 1 cut(s) 643
VpaK11BI GGWCC 1 cut(s) 197
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 1 cut(s) 561
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.