Rorug06G0264200

DNA topoisomerase 2-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003647
Physical Location & Seq
Forward (+)
41012833 .. 41015173
2341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0264200.1

Sequence Viewer

Length: 366 bp
ATGTATACTGAACACAAGCCTGCAGGTGAGAAACTTTACACCTTCACTATCATTACAACTTCTTCATCTTCAGCTTTGGGGTGGCTCCATGATGGCCTTGTTAGATGGTTTGTTAGAGGTGAAGACGGTGTGACCTTTGATCGGCCTTCCCCTGCATATGATCCAAAAGATTTTGTGCCTATTGGAGTCAAAGCTGGGTCTTTAATTGTTATTCGTGGTGATCTTATTCATCAAAGTTTTGAGAACCAGTCTTTGAAGTCAAGGCCTGCGTATAGCTTGCATGTGGTGGATACAGATGGCTGCAAATGGGCTCCAGATAATTGGATTCGGCGGAAGGTGGCACCAGAGCCCATCTATGTATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000785 GO:0001932 GO:0001934 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009893 GO:0009987 GO:0010556 GO:0010562 GO:0010604 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022402 GO:0022607 GO:0030174 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031570 GO:0032268 GO:0032270 GO:0033036 GO:0033135 GO:0033138 GO:0033260 GO:0033365 GO:0033554 GO:0033674 GO:0034502 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0035561 GO:0035563 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044786 GO:0045786 GO:0045859 GO:0045860 GO:0045937 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051098 GO:0051099 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051641 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070727 GO:0071163 GO:0071165 GO:0071168 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT BRCT_2 PTCB-BRCT

Protein Analysis

121

Amino Acids

13.61

Weight (kDa)

6.9

Isoelectric Point (pI)

53.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhyH PF05721 31 - 90 9.6e-09 Phytanoyl-CoA dioxygenase (PhyH)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 340
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 331
AclWI GGATC 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 3 cut(s) 74, 194, 276
AluI AGCT 3 cut(s) 74, 194, 276
AlwI GGATC 1 cut(s) 155
AoxI GGCC 3 cut(s) 94, 143, 263
ApeKI GCWGC 1 cut(s) 300
AsuHPI GGTGA 3 cut(s) 38, 131, 230
BanI GGYRCC 1 cut(s) 340
BanII GRGCYC 2 cut(s) 313, 351
BbsI GAAGAC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 287
BccI CCATC 4 cut(s) 86, 99, 290, 359
BciVI GTATCC 1 cut(s) 283
BfmI CTRYAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 14
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
BmiI GGNNCC 3 cut(s) 86, 312, 342
BpiI GAAGAC 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 287
BseYI CCCAGC 1 cut(s) 194
BshFI GGCC 3 cut(s) 96, 145, 265
BshNI GGYRCC 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 141
BsnI GGCC 3 cut(s) 96, 145, 265
Bsp1286I GDGCHC 2 cut(s) 313, 351
Bsp143I GATC 3 cut(s) 139, 160, 220
BspACI CCGC 1 cut(s) 331
BspANI GGCC 3 cut(s) 96, 145, 265
BspLI GGNNCC 3 cut(s) 86, 312, 342
BspMAI CTGCAG 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 340
BsrI ACTGG 1 cut(s) 247
BssMI GATC 3 cut(s) 139, 160, 220
BssNAI GTATAC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 128
BstC8I GCNNGC 3 cut(s) 21, 267, 278
BstKTI GATC 3 cut(s) 142, 163, 223
BstMBI GATC 3 cut(s) 139, 160, 220
BstNSI RCATGY 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 287
BstV2I GAAGAC 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 321
BstZ17I GTATAC 1 cut(s) 6
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 3 cut(s) 96, 145, 265
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 3 cut(s) 21, 267, 278
CviAII CATG 2 cut(s) 89, 281
DpnI GATC 3 cut(s) 141, 162, 222
DpnII GATC 3 cut(s) 139, 160, 220
EciI GGCGGA 1 cut(s) 346
Eco147I AGGCCT 1 cut(s) 265
Eco24I GRGCYC 2 cut(s) 313, 351
Eco57I CTGAAG 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 313, 351
FaeI CATG 2 cut(s) 92, 284
FaiI YATR 7 cut(s) 6, 90, 157, 159, 273, 282, 357
FatI CATG 2 cut(s) 88, 280
FauNDI CATATG 1 cut(s) 157
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 301
FriOI GRGCYC 2 cut(s) 313, 351
Fsp4HI GCNGC 1 cut(s) 301
GluI GCNGC 1 cut(s) 301
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 3 cut(s) 96, 145, 265
Hin1II CATG 2 cut(s) 92, 284
HinfI GANTC 2 cut(s) 186, 325
HphI GGTGA 3 cut(s) 38, 131, 230
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 3 cut(s) 52, 156, 328
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 4 cut(s) 23, 155, 280, 303
Hsp92II CATG 2 cut(s) 92, 284
Kzo9I GATC 3 cut(s) 139, 160, 220
LmnI GCTCC 2 cut(s) 90, 316
LpnPI CCDG 8 cut(s) 9, 33, 165, 180, 260, 279, 327, 357
Lsp1109I GCAGC 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 130
MalI GATC 3 cut(s) 141, 162, 222
MboI GATC 3 cut(s) 139, 160, 220
MboII GAAGA 3 cut(s) 54, 60, 134
MhlI GDGCHC 2 cut(s) 313, 351
MluCI AATT 2 cut(s) 204, 319
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 1 cut(s) 110
MseI TTAA 2 cut(s) 203, 364
NdeI CATATG 1 cut(s) 157
NdeII GATC 3 cut(s) 139, 160, 220
NlaIII CATG 2 cut(s) 92, 284
NlaIV GGNNCC 3 cut(s) 86, 312, 342
NmuCI GTSAC 1 cut(s) 130
NspI RCATGY 1 cut(s) 284
PaqCI CACCTGC 1 cut(s) 14
PceI AGGCCT 1 cut(s) 265
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 194
PspN4I GGNNCC 3 cut(s) 86, 312, 342
PstI CTGCAG 1 cut(s) 25
SaqAI TTAA 2 cut(s) 203, 364
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 3 cut(s) 139, 160, 220
SbfI CCTGCAGG 1 cut(s) 25
SchI GAGTC 1 cut(s) 195
SdaI CCTGCAGG 1 cut(s) 25
SduI GDGCHC 2 cut(s) 313, 351
SetI ASST 8 cut(s) 28, 44, 76, 121, 137, 196, 278, 339
SfcI CTRYAG 1 cut(s) 21
Sse8387I CCTGCAGG 1 cut(s) 25
Sse9I AATT 2 cut(s) 204, 319
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 1 cut(s) 331
StuI AGGCCT 1 cut(s) 265
TaaI ACNGT 1 cut(s) 128
TasI AATT 2 cut(s) 204, 319
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 2 cut(s) 203, 364
Tru9I TTAA 2 cut(s) 203, 364
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 54, 218
XceI RCATGY 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.