Rroxscaffold_2G00092010

DNA topoisomerase 2-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003647
Physical Location & Seq
Forward (+)
13566354 .. 13568729
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00092010.1

Sequence Viewer

Length: 339 bp
ATGGGGGGAGTTTTACATACTAAAACATCTTTGGATGTTAGTTTTGTCATTGCGAAGAATGTCTTGGCTGCAAAATACAAGGAAAAGTGGGCTGTAAATACATTGAAGAAGCCAGTTCTTACTATTAATTGGTTATATCAATGCTGCAATGAACATCGCATTGTTCCTCAAGAATCCTTTAGGGTTCTTCCTGTTTCTGGTTTGACGATCTGTGTTACCAGAATTCCATCAGATGAACGGAAGAAGATTGAAAATCTTATCACAGAAAATGGTGGACATTATTCTACTGAACTTACAAGGAAGTGCACACATTTGATTTGTGATGCTCCAGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000785 GO:0001932 GO:0001934 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009893 GO:0009987 GO:0010556 GO:0010562 GO:0010604 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022402 GO:0022607 GO:0030174 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031570 GO:0032268 GO:0032270 GO:0033036 GO:0033135 GO:0033138 GO:0033260 GO:0033365 GO:0033554 GO:0033674 GO:0034502 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0035561 GO:0035563 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044786 GO:0045786 GO:0045859 GO:0045860 GO:0045937 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051098 GO:0051099 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051641 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070727 GO:0071163 GO:0071165 GO:0071168 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT BRCT_2 PTCB-BRCT

Protein Analysis

112

Amino Acids

12.58

Weight (kDa)

9.06

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT PF00533 63 - 110 2.1e-10 BRCA1 C Terminus (BRCT) domain
PTCB-BRCT PF12738 68 - 111 8.3e-15 twin BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 106, 251
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
Alw21I GWGCWC 1 cut(s) 308
Alw44I GTGCAC 1 cut(s) 304
ApaLI GTGCAC 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 68, 144
ApoI RAATTY 1 cut(s) 222
AseI ATTAAT 1 cut(s) 126
BaeGI GKGCMC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 55, 131
BccI CCATC 1 cut(s) 235
BisI GCNGC 2 cut(s) 69, 145
BlsI GCNGC 2 cut(s) 70, 146
BmsI GCATC 1 cut(s) 313
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 113, 329
Bse3DI GCAATG 2 cut(s) 48, 154
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 2 cut(s) 48, 154
BseNI ACTGG 2 cut(s) 113, 329
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 2 cut(s) 55, 131
BsiHKAI GWGCWC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 1 cut(s) 207
BsrDI GCAATG 2 cut(s) 48, 154
BsrI ACTGG 2 cut(s) 113, 329
BssMI GATC 1 cut(s) 207
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 2 cut(s) 55, 131
BtgZI GCGATG 1 cut(s) 140
BtsCI GGATG 1 cut(s) 40
CviJI RGCY 3 cut(s) 68, 92, 112
CviKI_1 RGCY 3 cut(s) 68, 92, 112
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 222
FaiI YATR 2 cut(s) 18, 136
FalI AAGNNNNNCTT 2 cut(s) 47, 79
Fnu4HI GCNGC 2 cut(s) 69, 145
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 69, 145
GluI GCNGC 2 cut(s) 69, 145
GsuI CTGGAG 1 cut(s) 312
HinfI GANTC 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 275, 306
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 2 cut(s) 275, 306
HpyCH4V TGCA 3 cut(s) 71, 147, 306
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 4 cut(s) 126, 183, 204, 232
Lsp1109I GCAGC 2 cut(s) 55, 131
LweI GCATC 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 214
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 5 cut(s) 67, 118, 179, 253, 256
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 2 cut(s) 127, 222
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 1 cut(s) 177
MseI TTAA 1 cut(s) 126
NdeII GATC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 2 cut(s) 70, 146
PshBI ATTAAT 1 cut(s) 126
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 69, 145
Sau3AI GATC 1 cut(s) 207
SduI GDGCHC 1 cut(s) 308
SfaNI GCATC 1 cut(s) 313
SgeI CNNG 8 cut(s) 76, 91, 125, 182, 203, 210, 231, 309
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 2 cut(s) 127, 222
TasI AATT 2 cut(s) 127, 222
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 2 cut(s) 68, 144
TspDTI ATGAA 2 cut(s) 165, 249
TspGWI ACGGA 1 cut(s) 253
VneI GTGCAC 1 cut(s) 304
VspI ATTAAT 1 cut(s) 126
XapI RAATTY 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.