MD09G1182800.v1.1

Mitochondrial ubiquitin ligase activator of NFKB

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
15729612 .. 15732165
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1182800.v1.1.491

Sequence Viewer

Length: 1149 bp
ATGTCGTTGCACGAGCGAGCCGTAATCAACCTAGTCTCCCAACTCGCCCTCTCCTGCGACGGCGCCGTTTTGGGCGTAGTCCTAGCGTGCGCTGCCGTGCGTACCGTCATCAAGTTCGCCTACACTTCCTCAGCCCTGCGCAAGCTCCGTAACGCTCCCTACGTCAAAGTCTCCGACCTCCGCGCAATCCTCGCCCCCGACGAATCTCAGCCCTCAGATGCAAAGCTCGTCGTCTTACGCGGCACCGTCGACGGCAAGTCGAATAGCCCCAAATCCGGCGTATTCGTCTCTCGGGGAACAAAGAACAGTGCCGTCGTCGTTCAGAGAACTCAAACGTGTGTTTATAAGGATCGGAAGAACTTCATCGGATTTCCGTTTGATTTGAGAAGTTTAATTTTGAAGCCTTGGAGAGAGCAAGAGTCGAAGGATTTAAGAACGGTTCCTTTTGTTCTTGTTGAAGGTAGTCGAAGGAGGGTTTCGGAATTTGTTGTTGTGAATGTAGATGAATCAAGACATCCCTTACCTCTTACTACAGTTTATCTTAATTTTCATCCTGTTAATGCTTCTCCCTACAAATATAAACTCGTTGATGCACTCTTCCGGCATGAATACCCGATTGGTTTTCTCGATGAAGAGAAGATTCTTCCATTGGGAAAGGAAATTAGCGCTGTCGGTCTCTGCAGTTTAAAAAATGGAGTGCCGGATATCAAGTCGTGCAAAGATCTTCCCTATTTTCTCTCTGAGATGTCTAAGGATGAGATGGTTGTGGAACTTACTTCACGCACAAGAGTGCTATTCTGGAGTGGGATTGTTCTTGTTTCAATGTCAATTGGAATCCTTGGCTATGCTGTTTCGAGGAATTGGGATAAATTGAAAGCGTGGAAGCAAGGAAGGCAGTCACAGCAATCAATCCCTGCTGCTGACGGCAATACTGAAACTCAAATTGAAGAAGAGGAGGAAGTAGGAGAGGTTCCAGATGGACAGTTGTGTGTCATATGTCTGATGAGGAGAAGGCGATCGGCATTCATTCCTTGCGGGCATCGTGTTTGCTGCCACCCGTGTAGCATATCAATCCAACGGAATGTAACACCATGCTGTCCCGTTTGCCGGCAGGATATCCGCGCTTCAGTGCGAATATATGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

383

Amino Acids

42.66

Weight (kDa)

9.07

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIDE PF12483 136 - 279 5.9e-33 E3 Ubiquitin ligase
zf-C3HC4_3 PF13920 327 - 374 2.3e-11 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
Acc16I TGCGCA 1 cut(s) 140
AccB1I GGYRCC 2 cut(s) 62, 242
AccI GTMKAC 1 cut(s) 249
AccII CGCG 3 cut(s) 183, 240, 1122
AciI CCGC 4 cut(s) 181, 240, 1035, 1120
AclWI GGATC 1 cut(s) 357
AcsI RAATTY 1 cut(s) 482
AcuI CTGAAG 1 cut(s) 1110
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 1 cut(s) 103
AfeI AGCGCT 1 cut(s) 667
AfiI CCNNNNNNNGG 2 cut(s) 275, 1107
AflIII ACRYGT 1 cut(s) 335
AgsI TTSAA 5 cut(s) 400, 458, 822, 874, 947
AhdI GACNNNNNGTC 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 600, 632
AleI CACNNNNGTG 1 cut(s) 788
AluBI AGCT 2 cut(s) 145, 226
AluI AGCT 2 cut(s) 145, 226
Alw26I GTCTC 4 cut(s) 40, 175, 292, 680
AlwI GGATC 1 cut(s) 357
Ama87I CYCGRG 1 cut(s) 291
Aor51HI AGCGCT 1 cut(s) 667
ApeKI GCWGC 3 cut(s) 92, 917, 1050
ApoI RAATTY 1 cut(s) 482
Asp700I GAANNNNTTC 1 cut(s) 359
AspLEI GCGC 6 cut(s) 65, 92, 141, 185, 668, 1124
AvaI CYCGRG 1 cut(s) 291
BanI GGYRCC 2 cut(s) 62, 242
BauI CACGAG 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 130
BbvI GCAGC 3 cut(s) 79, 904, 1037
BccI CCATC 2 cut(s) 754, 971
BceAI ACGGC 7 cut(s) 5, 50, 76, 80, 268, 296, 940
BcoDI GTCTC 4 cut(s) 40, 175, 292, 680
BfaI CTAG 2 cut(s) 32, 83
BfmI CTRYAG 2 cut(s) 531, 679
BfoI RGCGCY 2 cut(s) 66, 669
BglII AGATCT 1 cut(s) 721
BisI GCNGC 4 cut(s) 93, 241, 918, 1051
BlsI GCNGC 4 cut(s) 94, 242, 919, 1052
BmeRI GACNNNNNGTC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 291
BmiI GGNNCC 4 cut(s) 64, 244, 441, 972
BmsI GCATC 3 cut(s) 208, 580, 1048
BpmI CTGGAG 1 cut(s) 820
Bpu10I CCTNAGC 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 680
BsaJI CCNNGG 2 cut(s) 404, 838
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 1107
Bse118I RCCGGY 1 cut(s) 1107
BseDI CCNNGG 2 cut(s) 404, 838
BseGI GGATG 3 cut(s) 514, 550, 760
BseLI CCNNNNNNNGG 2 cut(s) 275, 1107
BseMII CTCAG 4 cut(s) 144, 221, 228, 732
BseRI GAGGAG 2 cut(s) 968, 1021
BseXI GCAGC 3 cut(s) 79, 904, 1037
Bsh1236I CGCG 3 cut(s) 183, 240, 1122
Bsh1285I CGRYCG 1 cut(s) 1019
BshNI GGYRCC 2 cut(s) 62, 242
BsiEI CGRYCG 1 cut(s) 1019
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 4 cut(s) 276, 601, 701, 1108
BslFI GGGAC 1 cut(s) 1083
BslI CCNNNNNNNGG 2 cut(s) 275, 1107
BsmAI GTCTC 4 cut(s) 40, 175, 292, 680
BsmBI CGTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 1083
BsmI GAATGC 1 cut(s) 1022
Bso31I GGTCTC 1 cut(s) 680
BsoBI CYCGRG 1 cut(s) 291
Bsp143I GATC 3 cut(s) 349, 721, 1016
BspACI CCGC 4 cut(s) 181, 240, 1035, 1120
BspCNI CTCAG 4 cut(s) 143, 220, 227, 733
BspFNI CGCG 3 cut(s) 183, 240, 1122
BspLI GGNNCC 4 cut(s) 64, 244, 441, 972
BspMAI CTGCAG 1 cut(s) 683
BspPI GGATC 1 cut(s) 357
BspT107I GGYRCC 2 cut(s) 62, 242
BspTNI GGTCTC 1 cut(s) 680
BsrFI RCCGGY 1 cut(s) 1107
BssAI RCCGGY 1 cut(s) 1107
BssECI CCNNGG 2 cut(s) 404, 838
BssMI GATC 3 cut(s) 349, 721, 1016
BssNI GRCGYC 1 cut(s) 63
BssSI CACGAG 1 cut(s) 11
BssT1I CCWWGG 2 cut(s) 404, 838
Bst2BI CACGAG 1 cut(s) 11
Bst4CI ACNGT 6 cut(s) 106, 247, 308, 439, 535, 984
Bst6I CTCTTC 3 cut(s) 602, 627, 945
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 5 cut(s) 18, 88, 143, 1037, 1109
BstDEI CTNAG 5 cut(s) 130, 207, 214, 741, 750
BstF5I GGATG 3 cut(s) 514, 550, 760
BstFNI CGCG 3 cut(s) 183, 240, 1122
BstH2I RGCGCY 2 cut(s) 66, 669
BstHHI GCGC 6 cut(s) 65, 92, 141, 185, 668, 1124
BstKTI GATC 3 cut(s) 352, 724, 1019
BstMAI GTCTC 4 cut(s) 40, 175, 292, 680
BstMBI GATC 3 cut(s) 349, 721, 1016
BstMCI CGRYCG 1 cut(s) 1019
BstMWI GCNNNNNNNGC 4 cut(s) 92, 191, 892, 901
BstSFI CTRYAG 2 cut(s) 531, 679
BstUI CGCG 3 cut(s) 183, 240, 1122
BstV1I GCAGC 3 cut(s) 79, 904, 1037
BstX2I RGATCY 1 cut(s) 721
BstYI RGATCY 1 cut(s) 721
BtsCI GGATG 3 cut(s) 514, 550, 760
BtsIMutI CAGTG 2 cut(s) 313, 1134
Cac8I GCNNGC 5 cut(s) 18, 88, 143, 1037, 1109
CfoI GCGC 6 cut(s) 65, 92, 141, 185, 668, 1124
Cfr10I RCCGGY 1 cut(s) 1107
Csp6I GTAC 1 cut(s) 102
CviAII CATG 2 cut(s) 605, 1092
CviJI RGCY 8 cut(s) 20, 134, 145, 211, 226, 267, 403, 843
CviKI_1 RGCY 8 cut(s) 20, 134, 145, 211, 226, 267, 403, 843
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 5 cut(s) 130, 207, 214, 741, 750
DinI GGCGCC 1 cut(s) 64
DpnI GATC 3 cut(s) 351, 723, 1018
DpnII GATC 3 cut(s) 349, 721, 1016
DraI TTTAAA 1 cut(s) 687
DriI GACNNNNNGTC 1 cut(s) 256
Eam1104I CTCTTC 3 cut(s) 602, 627, 945
Eam1105I GACNNNNNGTC 1 cut(s) 256
EarI CTCTTC 3 cut(s) 602, 627, 945
Eco130I CCWWGG 2 cut(s) 404, 838
Eco31I GGTCTC 1 cut(s) 680
Eco32I GATATC 2 cut(s) 706, 1117
Eco47III AGCGCT 1 cut(s) 667
Eco57I CTGAAG 1 cut(s) 1110
Eco88I CYCGRG 1 cut(s) 291
EcoRV GATATC 2 cut(s) 706, 1117
EcoT14I CCWWGG 2 cut(s) 404, 838
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 2 cut(s) 404, 838
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 2 cut(s) 608, 1095
FaqI GGGAC 1 cut(s) 1083
FatI CATG 2 cut(s) 604, 1091
FauI CCCGC 1 cut(s) 1028
FauNDI CATATG 1 cut(s) 995
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 4 cut(s) 93, 241, 918, 1051
FokI GGATG 3 cut(s) 501, 537, 767
Fsp4HI GCNGC 4 cut(s) 93, 241, 918, 1051
FspBI CTAG 2 cut(s) 32, 83
FspI TGCGCA 1 cut(s) 140
GlaI GCGC 6 cut(s) 64, 91, 140, 184, 667, 1123
GluI GCNGC 4 cut(s) 93, 241, 918, 1051
GsuI CTGGAG 1 cut(s) 820
HaeII RGCGCY 2 cut(s) 66, 669
HapII CCGG 4 cut(s) 276, 601, 701, 1108
HhaI GCGC 6 cut(s) 65, 92, 141, 185, 668, 1124
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 2 cut(s) 608, 1095
Hin6I GCGC 6 cut(s) 63, 90, 139, 183, 666, 1122
HinP1I GCGC 6 cut(s) 63, 90, 139, 183, 666, 1122
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 6 cut(s) 203, 419, 506, 640, 834, 1142
HpaII CCGG 4 cut(s) 276, 601, 701, 1108
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 8 cut(s) 175, 217, 324, 354, 368, 481, 742, 1002
Hpy188III TCNNGA 4 cut(s) 510, 626, 799, 974
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 7 cut(s) 62, 203, 233, 251, 254, 317, 320
HpyAV CCTTC 5 cut(s) 418, 452, 462, 885, 1005
HpyCH4III ACNGT 6 cut(s) 106, 247, 308, 439, 535, 984
HpyCH4IV ACGT 2 cut(s) 162, 335
HpyCH4V TGCA 5 cut(s) 10, 221, 593, 681, 717
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 191, 892, 901
HpyF3I CTNAG 5 cut(s) 130, 207, 214, 741, 750
HpySE526I ACGT 2 cut(s) 162, 335
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 2 cut(s) 608, 1095
HspAI GCGC 6 cut(s) 63, 90, 139, 183, 666, 1122
KasI GGCGCC 1 cut(s) 62
KroI GCCGGC 1 cut(s) 1107
KroNI GCCGGC 1 cut(s) 1109
Kzo9I GATC 3 cut(s) 349, 721, 1016
LmnI GCTCC 2 cut(s) 150, 160
Lsp1109I GCAGC 3 cut(s) 79, 904, 1037
LweI GCATC 3 cut(s) 208, 580, 1048
MaeI CTAG 2 cut(s) 32, 83
MaeII ACGT 2 cut(s) 162, 335
MaeIII GTNAC 3 cut(s) 149, 897, 1084
MalI GATC 3 cut(s) 351, 723, 1018
MboI GATC 3 cut(s) 349, 721, 1016
MboII GAAGA 8 cut(s) 367, 589, 635, 644, 649, 716, 959, 962
MfeI CAATTG 1 cut(s) 828
MflI RGATCY 1 cut(s) 721
MluCI AATT 8 cut(s) 393, 482, 544, 660, 828, 859, 869, 942
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 2 cut(s) 198, 1099
MroNI GCCGGC 1 cut(s) 1107
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 6 cut(s) 392, 431, 543, 558, 686, 1147
MslI CAYNNNNRTG 1 cut(s) 788
MspI CCGG 4 cut(s) 276, 601, 701, 1108
MunI CAATTG 1 cut(s) 828
Mva1269I GAATGC 1 cut(s) 1022
MvnI CGCG 3 cut(s) 183, 240, 1122
MwoI GCNNNNNNNGC 4 cut(s) 92, 191, 892, 901
NaeI GCCGGC 1 cut(s) 1109
NarI GGCGCC 1 cut(s) 63
NdeI CATATG 1 cut(s) 995
NdeII GATC 3 cut(s) 349, 721, 1016
NgoMIV GCCGGC 1 cut(s) 1107
NlaIII CATG 2 cut(s) 608, 1095
NlaIV GGNNCC 4 cut(s) 64, 244, 441, 972
NmuCI GTSAC 1 cut(s) 897
NsbI TGCGCA 1 cut(s) 140
OliI CACNNNNGTG 1 cut(s) 788
PcsI WCGNNNNNNNCGW 3 cut(s) 18, 159, 198
PctI GAATGC 1 cut(s) 1022
PdiI GCCGGC 1 cut(s) 1109
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 5 cut(s) 203, 506, 640, 834, 1142
PkrI GCNGC 4 cut(s) 94, 242, 919, 1052
Ple19I CGATCG 1 cut(s) 1019
PleI GAGTC 1 cut(s) 427
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 427
PsiI TTATAA 1 cut(s) 345
PspN4I GGNNCC 4 cut(s) 64, 244, 441, 972
PsrI GAACNNNNNNTAC 2 cut(s) 954, 986
PstI CTGCAG 1 cut(s) 683
PsuI RGATCY 1 cut(s) 721
PvuI CGATCG 1 cut(s) 1019
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 788
SalI GTCGAC 1 cut(s) 248
SaqAI TTAA 6 cut(s) 392, 431, 543, 558, 686, 1147
SatI GCNGC 4 cut(s) 93, 241, 918, 1051
Sau3AI GATC 3 cut(s) 349, 721, 1016
SchI GAGTC 1 cut(s) 428
SetI ASST 9 cut(s) 33, 147, 165, 180, 228, 338, 463, 526, 972
SfaNI GCATC 3 cut(s) 208, 580, 1048
SfcI CTRYAG 2 cut(s) 531, 679
SfoI GGCGCC 1 cut(s) 64
SgrDI CGTCGACG 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 788
Sse9I AATT 8 cut(s) 393, 482, 544, 660, 828, 859, 869, 942
SsiI CCGC 4 cut(s) 181, 240, 1035, 1120
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 2 cut(s) 32, 83
StyI CCWWGG 2 cut(s) 404, 838
TaaI ACNGT 6 cut(s) 106, 247, 308, 439, 535, 984
TaiI ACGT 2 cut(s) 165, 338
TaqI TCGA 6 cut(s) 249, 260, 422, 466, 627, 854
TaqII GACCGA 1 cut(s) 662
TasI AATT 8 cut(s) 393, 482, 544, 660, 828, 859, 869, 942
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 5 cut(s) 203, 506, 640, 834, 1142
Tru1I TTAA 6 cut(s) 392, 431, 543, 558, 686, 1147
Tru9I TTAA 6 cut(s) 392, 431, 543, 558, 686, 1147
TscAI CASTG 2 cut(s) 313, 1134
TseFI GTSAC 1 cut(s) 897
TseI GCWGC 3 cut(s) 92, 917, 1050
Tsp45I GTSAC 1 cut(s) 897
TspDTI ATGAA 6 cut(s) 352, 519, 539, 621, 645, 1015
TspGWI ACGGA 3 cut(s) 137, 363, 1093
TspRI CASTG 2 cut(s) 313, 1134
XapI RAATTY 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 2 cut(s) 32, 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.