Rroxscaffold_7G00191020

Mitochondrial ubiquitin ligase activator of NFKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002439
Physical Location & Seq
Forward (+)
31488341 .. 31491601
3261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191020.1

Sequence Viewer

Length: 363 bp
ATGGCATACTTGGAGTTCAAGACCACTATAAGGGTACTTCTCAAAGAAGACGACGCCGTTTTGGGCACCATCGTCGCCTTCCTTGCCTTCGCCGTCGTCGATTCCTTCCTCGGCTTCAAATCCACTTTCTCCGCCCTTCGTAAGATCCGCCAAGCCCCCTCCGTCAAAGTCTCGGATCTCCACTCCCTATTCCACGATGACTCCGATCGCCCGCGGCCGTCGGATGCCTCCAAGCTCGTCACCCTCTGCGACGGTGTCCAAGACACACCCGACGCCAACGGAACCTACAAGACCCTCAAGTCTAGCCCGATCATCAACCCCGAAACTAATAAGAATGTACGAACACCACCATCGACGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GIDE zf-C3HC4_3

Protein Analysis

120

Amino Acids

13.15

Weight (kDa)

7.86

Isoelectric Point (pI)

26.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 65
AccII CGCG 1 cut(s) 214
AciI CCGC 4 cut(s) 132, 148, 212, 214
AclWI GGATC 2 cut(s) 139, 183
AcoI YGGCCR 1 cut(s) 215
AcyI GRCGYC 3 cut(s) 54, 273, 356
AfaI GTAC 2 cut(s) 36, 339
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 2 cut(s) 19, 118
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 2 cut(s) 139, 183
AoxI GGCC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 54
BccI CCATC 2 cut(s) 77, 358
BceAI ACGGC 4 cut(s) 41, 77, 202, 343
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 1 cut(s) 303
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
BmiI GGNNCC 2 cut(s) 67, 283
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 281
BsaHI GRCGYC 3 cut(s) 54, 273, 356
BsaJI CCNNGG 2 cut(s) 109, 212
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 109, 212
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 68
BseX3I CGGCCG 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 214
Bsh1285I CGRYCG 2 cut(s) 208, 218
BshFI GGCC 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 65
BsiEI CGRYCG 2 cut(s) 208, 218
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 175
BsnI GGCC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 4 cut(s) 144, 175, 205, 309
BspACI CCGC 4 cut(s) 132, 148, 212, 214
BspANI GGCC 1 cut(s) 217
BspFNI CGCG 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 67, 283
BspPI GGATC 2 cut(s) 139, 183
BspT107I GGYRCC 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 109, 212
BssMI GATC 4 cut(s) 144, 175, 205, 309
BssNI GRCGYC 3 cut(s) 54, 273, 356
Bst4CI ACNGT 1 cut(s) 254
BstACI GRCGYC 3 cut(s) 54, 273, 356
BstC8I GCNNGC 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 214
BstKTI GATC 4 cut(s) 147, 178, 208, 312
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 4 cut(s) 144, 175, 205, 309
BstMCI CGRYCG 2 cut(s) 208, 218
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSLI GKGCMC 1 cut(s) 68
BstUI CGCG 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 2 cut(s) 144, 175
BstYI RGATCY 2 cut(s) 144, 175
BstZI CGGCCG 1 cut(s) 215
BsuRI GGCC 1 cut(s) 217
BtgI CCRYGG 1 cut(s) 212
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 212
Cfr42I CCGCGG 1 cut(s) 215
CseI GACGC 2 cut(s) 62, 281
Csp6I GTAC 2 cut(s) 35, 338
CviJI RGCY 5 cut(s) 114, 155, 217, 235, 306
CviKI_1 RGCY 5 cut(s) 114, 155, 217, 235, 306
CviQI GTAC 2 cut(s) 35, 338
DpnI GATC 4 cut(s) 146, 177, 207, 311
DpnII GATC 4 cut(s) 144, 175, 205, 309
DrdI GACNNNNNNGTC 1 cut(s) 298
DseDI GACNNNNNNGTC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 215
EagI CGGCCG 1 cut(s) 215
EciI GGCGGA 2 cut(s) 121, 137
EclXI CGGCCG 1 cut(s) 215
Eco52I CGGCCG 1 cut(s) 215
FaiI YATR 2 cut(s) 7, 29
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 1 cut(s) 303
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 1 cut(s) 217
HgaI GACGC 2 cut(s) 62, 281
Hin1I GRCGYC 3 cut(s) 54, 273, 356
HinfI GANTC 2 cut(s) 101, 200
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 175, 205, 223
Hpy188III TCNNGA 1 cut(s) 19
Hpy99I CGWCG 8 cut(s) 56, 77, 98, 101, 223, 254, 275, 358
HpyAV CCTTC 4 cut(s) 88, 97, 115, 146
HpyCH4III ACNGT 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
Hsp92I GRCGYC 3 cut(s) 54, 273, 356
KspI CCGCGG 1 cut(s) 215
Kzo9I GATC 4 cut(s) 144, 175, 205, 309
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 238
MalI GATC 4 cut(s) 146, 177, 207, 311
MboI GATC 4 cut(s) 144, 175, 205, 309
MboII GAAGA 1 cut(s) 59
MflI RGATCY 2 cut(s) 144, 175
MhlI GDGCHC 1 cut(s) 68
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 5 cut(s) 119, 169, 238, 254, 305
MspA1I CMGCKG 1 cut(s) 214
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 4 cut(s) 144, 175, 205, 309
NlaIV GGNNCC 2 cut(s) 67, 283
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 238
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 201
PfeI GAWTC 1 cut(s) 101
PflFI GACNNNGTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 216
Ple19I CGATCG 1 cut(s) 208
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 67, 283
PsuI RGATCY 2 cut(s) 144, 175
PsyI GACNNNGTC 1 cut(s) 254
PvuI CGATCG 1 cut(s) 208
RsaI GTAC 2 cut(s) 36, 339
RsaNI GTAC 2 cut(s) 35, 338
SacII CCGCGG 1 cut(s) 215
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 4 cut(s) 144, 175, 205, 309
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 68
SetI ASST 2 cut(s) 237, 287
SfaNI GCATC 1 cut(s) 214
Sfr303I CCGCGG 1 cut(s) 215
SgrBI CCGCGG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SsiI CCGC 4 cut(s) 132, 148, 212, 214
SspMI CTAG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 2 cut(s) 99, 353
TauI GCSGC 1 cut(s) 217
TfiI GAWTC 1 cut(s) 101
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspGWI ACGGA 2 cut(s) 151, 294
Tth111I GACNNNGTC 1 cut(s) 254
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.