Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8485045.1

Orthogroup ID

OG0002439

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2120

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8485045.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 836 bp

ccatcgacgccgtcatcgttcagaggacgcaacggcttttgtataacgagtggaagggttttctttggcggacttatgatttgagagctaaattggcgaagccttggagagaacaagaatccagcacgatcaaaatggttccttttgttcttggtgaagctgggaattccgatttcgttgttccgaatatcgatggctcaggacaccccttgcctcttgtgacagtttatcagcaaaagcagctctttaatcctagtccctttacattcctgcagaaaatttttggtcatgattacccaatcggtctacaagatgaagaaaaggttcttccattgggagtcgaagtcagtgctgttggtatctgcagtttccaaaatgggataccagaaatcaagtcatgccgtgatcttccctattttatgtctttgatggataaggatgagttggttctacatctcgaacacaagacaaacacattattctggtttggggttggttttggtttgttgtcagttggaatcctctgctatgctggtgcaaggaattggcacaaatttagagaatggaggcaacgaaggcagccacagcaagcaagcgatgcagctggaaccattgctgatcctcaaattgaagcagaagatgaggaagtaggggaagtaccggatgggcagttatgcgtcatctgtctgatgaggagaagacgatctgccttcattccgtgcgggcatcttgtgtgttgccatctctgctgcatatccattgagcagagcacgtcacccaagtgcccggtctgcaggcaggagatccgcactgcaatgcgcatatatgactcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIDE zf-C3HC4_3

Protein Analysis

277

Amino Acids

31.55

Weight (kDa)

6.42

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54150 AT1G54150
fragaria_vesca	FvH4_6g34790
malus_domestica	MD02G1089500.v1.1 MD09G1182600.v1.1 MD09G1182700.v1.1 MD09G1182800.v1.1
prunus_persica	Prupe.3G040200_v2.0.a1
pyrus_communis	pycom02g07150 pycom09g09990 pycom09g10000 pycom09g10010 pycom09g10020 pycom10g20170 pycom10g20200
rosa_chinensis	RchiOBHm_Chr2g0145651
rosa_laevigata	RLG00000012894 RLG00000012896 RLG00000020156
rosa_multiflora	Rmu_co8485045.1_g000001 Rmu_sc0000227.1_g000002 Rmu_sc0003046.1_g000004 Rmu_sc0006544.1_g000002 Rmu_sc0009650.1_g000008 Rmu_sc0024073.1_g000001 Rmu_sc0027050.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434660 Rroxscaffold_2G00100580 Rroxscaffold_7G00191020
rosa_rugosa	Rorug02G0392400
rosa_samantha	Rh2AG197700 Rh2AG446800 Rh2BG416100 Rh2BG458500 Rh2CG433500 Rh2DG205400 Rh2DG468100 Rh4AG042900 Rh4CG045900 Rh6AG435700
rosa_wichuraiana	Rw2G036490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	820
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	3 cut(s)	69, 722, 807
AclWI	GGATC	2 cut(s)	613, 798
AcsI	RAATTY	3 cut(s)	165, 278, 553
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	659
AgsI	TTSAA	1 cut(s)	631
AjiI	CACGTC	1 cut(s)	773
AleI	CACNNNNGTG	1 cut(s)	780
AluBI	AGCT	4 cut(s)	88, 160, 243, 604
AluI	AGCT	4 cut(s)	88, 160, 243, 604
Alw21I	GWGCWC	1 cut(s)	772
AlwI	GGATC	2 cut(s)	613, 798
ApeKI	GCWGC	4 cut(s)	240, 579, 601, 749
ApoI	RAATTY	3 cut(s)	165, 278, 553
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	821
AsuC2I	CCSGG	1 cut(s)	787
AsuHPI	GGTGA	2 cut(s)	166, 767
BaeGI	GKGCMC	1 cut(s)	787
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	772
BbvI	GCAGC	4 cut(s)	252, 591, 613, 736
BccI	CCATC	5 cut(s)	10, 187, 423, 658, 749
BceAI	ACGGC	2 cut(s)	49, 386
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciVI	GTATCC	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	787
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	3 cut(s)	271, 363, 792
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	4 cut(s)	241, 580, 602, 750
BlsI	GCNGC	4 cut(s)	242, 581, 603, 751
Bme1390I	CCNGG	1 cut(s)	787
BmgBI	CACGTC	1 cut(s)	773
BmiI	GGNNCC	2 cut(s)	140, 609
BmrFI	CCNGG	1 cut(s)	787
BmsI	GCATC	2 cut(s)	588, 735
BpiI	GAAGAC	1 cut(s)	705
Bpu10I	CCTNAGC	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	787
Bsa29I	ATCGAT	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	660
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bse3DI	GCAATG	2 cut(s)	611, 821
BseCI	ATCGAT	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	444, 669
BseMI	GCAATG	2 cut(s)	611, 821
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	708
BseSI	GKGCMC	1 cut(s)	787
BseXI	GCAGC	4 cut(s)	252, 591, 613, 736
BseYI	CCCAGC	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	772
BsiSI	CCGG	2 cut(s)	661, 787
BslFI	GGGAC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	772, 787
Bsp143I	GATC	5 cut(s)	128, 405, 618, 703, 803
BspACI	CCGC	3 cut(s)	69, 722, 807
BspCNI	CTCAG	1 cut(s)	211
BspDI	ATCGAT	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	140, 609
BspMAI	CTGCAG	3 cut(s)	275, 367, 796
BspPI	GGATC	2 cut(s)	613, 798
BsrDI	GCAATG	2 cut(s)	611, 821
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	5 cut(s)	128, 405, 618, 703, 803
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	598
BstC8I	GCNNGC	4 cut(s)	590, 594, 724, 796
BstDEI	CTNAG	2 cut(s)	198, 833
BstF5I	GGATG	2 cut(s)	444, 669
BstHHI	GCGC	1 cut(s)	821
BstKTI	GATC	5 cut(s)	131, 408, 621, 706, 806
BstMBI	GATC	5 cut(s)	128, 405, 618, 703, 803
BstMWI	GCNNNNNNNGC	7 cut(s)	94, 240, 576, 585, 598, 746, 791
BstSCI	CCNGG	1 cut(s)	785
BstSFI	CTRYAG	3 cut(s)	271, 363, 792
BstSLI	GKGCMC	1 cut(s)	787
BstV1I	GCAGC	4 cut(s)	252, 591, 613, 736
BstV2I	GAAGAC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	803
BstYI	RGATCY	1 cut(s)	803
Bsu15I	ATCGAT	1 cut(s)	191
BsuI	GTATCC	1 cut(s)	374
BsuTUI	ATCGAT	1 cut(s)	191
BtgZI	GCGATG	1 cut(s)	611
BtrI	CACGTC	1 cut(s)	773
BtsCI	GGATG	2 cut(s)	444, 669
BtsI	GCAGTG	1 cut(s)	809
BtsIMutI	CAGTG	2 cut(s)	354, 809
Cac8I	GCNNGC	4 cut(s)	590, 594, 724, 796
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	821
ClaI	ATCGAT	1 cut(s)	191
CseI	GACGC	3 cut(s)	16, 36, 666
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	2 cut(s)	289, 398
CviJI	RGCY	8 cut(s)	36, 88, 102, 160, 197, 243, 582, 604
CviKI_1	RGCY	8 cut(s)	36, 88, 102, 160, 197, 243, 582, 604
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	2 cut(s)	198, 833
DpnI	GATC	5 cut(s)	130, 407, 620, 705, 805
DpnII	GATC	5 cut(s)	128, 405, 618, 703, 803
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	292, 401
FalI	AAGNNNNNCTT	2 cut(s)	229, 261
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	2 cut(s)	288, 397
FauI	CCCGC	1 cut(s)	715
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	4 cut(s)	241, 580, 602, 750
FokI	GGATG	2 cut(s)	451, 676
Fsp4HI	GCNGC	4 cut(s)	241, 580, 602, 750
FspAI	RTGCGCAY	1 cut(s)	820
FspBI	CTAG	1 cut(s)	254
FspI	TGCGCA	1 cut(s)	820
GlaI	GCGC	1 cut(s)	820
GluI	GCNGC	4 cut(s)	241, 580, 602, 750
GsaI	CCCAGC	1 cut(s)	164
HapII	CCGG	2 cut(s)	661, 787
HgaI	GACGC	3 cut(s)	16, 36, 666
HhaI	GCGC	1 cut(s)	821
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	292, 401
Hin6I	GCGC	1 cut(s)	819
HinP1I	GCGC	1 cut(s)	819
HinfI	GANTC	4 cut(s)	118, 338, 518, 829
HpaII	CCGG	2 cut(s)	661, 787
HphI	GGTGA	2 cut(s)	166, 767
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	4 cut(s)	23, 171, 185, 689
Hpy188III	TCNNGA	3 cut(s)	200, 289, 457
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	48, 569, 720
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	7 cut(s)	273, 365, 538, 601, 752, 794, 814
HpyF10VI	GCNNNNNNNGC	7 cut(s)	94, 240, 576, 585, 598, 746, 791
HpyF3I	CTNAG	2 cut(s)	198, 833
HpySE526I	ACGT	1 cut(s)	772
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	292, 401
HspAI	GCGC	1 cut(s)	819
Kzo9I	GATC	5 cut(s)	128, 405, 618, 703, 803
Lsp1109I	GCAGC	4 cut(s)	252, 591, 613, 736
LweI	GCATC	2 cut(s)	588, 735
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	2 cut(s)	219, 773
MalI	GATC	5 cut(s)	130, 407, 620, 705, 805
MboI	GATC	5 cut(s)	128, 405, 618, 703, 803
MboII	GAAGA	5 cut(s)	319, 328, 400, 649, 710
MflI	RGATCY	1 cut(s)	803
MhlI	GDGCHC	2 cut(s)	772, 787
MluCI	AATT	6 cut(s)	91, 165, 278, 543, 553, 626
MlyI	GAGTC	2 cut(s)	347, 823
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	7 cut(s)	17, 224, 532, 560, 632, 636, 686
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	2 cut(s)	780, 814
MspA1I	CMGCKG	1 cut(s)	604
MspI	CCGG	2 cut(s)	661, 787
MspR9I	CCNGG	1 cut(s)	787
MwoI	GCNNNNNNNGC	7 cut(s)	94, 240, 576, 585, 598, 746, 791
NciI	CCSGG	1 cut(s)	787
NdeII	GATC	5 cut(s)	128, 405, 618, 703, 803
NlaIII	CATG	2 cut(s)	292, 401
NlaIV	GGNNCC	2 cut(s)	140, 609
NmuCI	GTSAC	2 cut(s)	219, 773
NsbI	TGCGCA	1 cut(s)	820
OliI	CACNNNNGTG	1 cut(s)	780
PagI	TCATGA	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	118, 518
PflFI	GACNNNGTC	1 cut(s)	10
PkrI	GCNGC	4 cut(s)	242, 581, 603, 751
PleI	GAGTC	2 cut(s)	346, 823
PpsI	GAGTC	2 cut(s)	346, 823
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	140, 609
PstI	CTGCAG	3 cut(s)	275, 367, 796
PsuI	RGATCY	1 cut(s)	803
PsyI	GACNNNGTC	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
RseI	CAYNNNNRTG	2 cut(s)	780, 814
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	4 cut(s)	241, 580, 602, 750
Sau3AI	GATC	5 cut(s)	128, 405, 618, 703, 803
SchI	GAGTC	2 cut(s)	347, 823
ScrFI	CCNGG	1 cut(s)	787
SduI	GDGCHC	2 cut(s)	772, 787
SetI	ASST	6 cut(s)	90, 162, 245, 326, 606, 775
SfaNI	GCATC	2 cut(s)	588, 735
SfcI	CTRYAG	3 cut(s)	271, 363, 792
SmiMI	CAYNNNNRTG	2 cut(s)	780, 814
Sse9I	AATT	6 cut(s)	91, 165, 278, 543, 553, 626
SsiI	CCGC	3 cut(s)	69, 722, 807
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	785
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	225
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	4 cut(s)	5, 191, 341, 458
TaqII	GACCGA	1 cut(s)	292
TasI	AATT	6 cut(s)	91, 165, 278, 543, 553, 626
TfiI	GAWTC	2 cut(s)	118, 518
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	2 cut(s)	354, 816
TseFI	GTSAC	2 cut(s)	219, 773
TseI	GCWGC	4 cut(s)	240, 579, 601, 749
Tsp45I	GTSAC	2 cut(s)	219, 773
TspDTI	ATGAA	2 cut(s)	329, 702
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	354, 816
Tth111I	GACNNNGTC	1 cut(s)	10
XapI	RAATTY	3 cut(s)	165, 278, 553
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.