Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002439

Physical Location & Seq

Genomic Coordinates Forward (+)

23148017 .. 23149335

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTTGTAGATCTTACAGCGCACACACAAGTACTGTTATTCACTGGGATTGTTCTTGGTTCAGTATCAATCGGAGTCCTTGGCTATTTTGTTGCCAGGAATTGGAATAGATGGAAAATGTGGAAGCAACGAAGGCAGCTACTGCAAGCAATTCGTGCTTCTGAGAGCAATGTTGAAACTCAAGTTCAAGGAGCGGATGCAGAGGATGAAGTTCCAAGGCATCAGTTGTGTGTCGTATGTCATACGAGTAGAAGGCAATACGCATTCATTCCTTGTGGGCATCTGCTCTGTTGCCAATCATGTAGTGCACTGGTCAAAAGTCACGTTTCACCGAAGTGCCTTCTTTGTCAGGTGGAAATTCTCGTTTCGGTACGAATTTATGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIDE zf-C3HC4_3

Protein Analysis

130

Amino Acids

14.56

Weight (kDa)

8.7

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54150 AT1G54150
fragaria_vesca	FvH4_6g34790
malus_domestica	MD02G1089500.v1.1 MD09G1182600.v1.1 MD09G1182700.v1.1 MD09G1182800.v1.1
prunus_persica	Prupe.3G040200_v2.0.a1
pyrus_communis	pycom02g07150 pycom09g09990 pycom09g10000 pycom09g10010 pycom09g10020 pycom10g20170 pycom10g20200
rosa_chinensis	RchiOBHm_Chr2g0145651
rosa_laevigata	RLG00000012894 RLG00000012896 RLG00000020156
rosa_multiflora	Rmu_co8485045.1_g000001 Rmu_sc0000227.1_g000002 Rmu_sc0003046.1_g000004 Rmu_sc0006544.1_g000002 Rmu_sc0009650.1_g000008 Rmu_sc0024073.1_g000001 Rmu_sc0027050.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434660 Rroxscaffold_2G00100580 Rroxscaffold_7G00191020
rosa_rugosa	Rorug02G0392400
rosa_samantha	Rh2AG197700 Rh2AG446800 Rh2BG416100 Rh2BG458500 Rh2CG433500 Rh2DG205400 Rh2DG468100 Rh4AG042900 Rh4CG045900 Rh6AG435700
rosa_wichuraiana	Rw2G036490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccBSI	CCGCTC	1 cut(s)	194
AciI	CCGC	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	357, 375
AfaI	GTAC	2 cut(s)	33, 372
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	176, 188
AjnI	CCWGG	1 cut(s)	95
AleI	CACNNNNGTG	1 cut(s)	334
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	310
Alw44I	GTGCAC	1 cut(s)	306
AlwNI	CAGNNNCTG	1 cut(s)	142
ApaLI	GTGCAC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	2 cut(s)	357, 375
AspLEI	GCGC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	105
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	97
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	97
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	3 cut(s)	187, 229, 289
BmuI	ACTGGG	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	79, 215
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	2 cut(s)	49, 315
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	79, 215
BseGI	GGATG	2 cut(s)	202, 211
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	49, 315
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	154
BsrBI	CCGCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	49, 315
BssECI	CCNNGG	2 cut(s)	79, 215
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	2 cut(s)	79, 215
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	36
BstAPI	GCANNNNNTGC	2 cut(s)	142, 155
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	162, 387
BstF5I	GGATG	2 cut(s)	202, 211
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 142, 155
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	202, 211
BtsIMutI	CAGTG	2 cut(s)	42, 308
Cac8I	GCNNGC	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	142
CfoI	GCGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	32, 371
CviAII	CATG	1 cut(s)	300
CviJI	RGCY	2 cut(s)	84, 139
CviKI_1	RGCY	2 cut(s)	84, 139
CviQI	GTAC	2 cut(s)	32, 371
DdeI	CTNAG	2 cut(s)	162, 387
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eco130I	CCWWGG	2 cut(s)	79, 215
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	79, 215
ErhI	CCWWGG	2 cut(s)	79, 215
FaeI	CATG	1 cut(s)	303
FaiI	YATR	4 cut(s)	238, 243, 301, 381
FatI	CATG	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	2 cut(s)	209, 218
Fsp4HI	GCNGC	1 cut(s)	137
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	2 cut(s)	75, 383
HphI	GGTGA	1 cut(s)	321
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	74, 163
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	3 cut(s)	126, 246, 350
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	3 cut(s)	145, 200, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 142, 155
HpyF3I	CTNAG	2 cut(s)	162, 387
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	303
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	5 cut(s)	30, 82, 109, 296, 335
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	3 cut(s)	187, 229, 289
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	1 cut(s)	12
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	1 cut(s)	10
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	4 cut(s)	100, 150, 357, 375
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	1 cut(s)	196
MslI	CAYNNNNRTG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	97
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	3 cut(s)	133, 142, 155
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	320
OliI	CACNNNNGTG	1 cut(s)	334
PctI	GAATGC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	2 cut(s)	33, 372
RsaNI	GTAC	2 cut(s)	32, 371
RseI	CAYNNNNRTG	1 cut(s)	334
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	10
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	3 cut(s)	141, 327, 354
SfaNI	GCATC	3 cut(s)	187, 229, 289
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	4 cut(s)	100, 150, 357, 375
SsiI	CCGC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	2 cut(s)	79, 215
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	327
TasI	AATT	4 cut(s)	100, 150, 357, 375
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	383
TscAI	CASTG	2 cut(s)	49, 315
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	2 cut(s)	222, 256
TspRI	CASTG	2 cut(s)	49, 315
Van91I	CCANNNNNTGG	1 cut(s)	102
VneI	GTGCAC	1 cut(s)	306
XapI	RAATTY	2 cut(s)	357, 375
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.