Rmu_sc0006544.1_g000002

Mitochondrial ubiquitin ligase activator of NFKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006544.1
OG0002439
Physical Location & Seq
Reverse (-)
3070 .. 3429
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006544.1_g000002.1.cds

Sequence Viewer

Length: 360 bp
atgttgtcgaatgagcataccctagcttccctaatctcccagcttaacatatccttagacggcgctgttttgggcaccattgtcgccttcgccgccgtcaattccttcctcagcttcaaatccacttcctctgccctccgcaagatccgccaagccccctccgtcaaaattttcgatctccactccctaatccatgactactccgaccagctgcaaccgtctgatgcctccaagctcgtcgtcctctacggccgcgtccaagccacacccgacgccaacggaacctacaagaccctcaagtctagcccgatcatcaaccccgaaaataatgagaacagaataccaccatcgacgccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GIDE zf-C3HC4_3

Protein Analysis

119

Amino Acids

12.86

Weight (kDa)

8.07

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 255
AciI CCGC 4 cut(s) 93, 139, 148, 253
AclWI GGATC 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 168
AcyI GRCGYC 2 cut(s) 273, 353
AgsI TTSAA 1 cut(s) 118
AluBI AGCT 5 cut(s) 26, 43, 114, 211, 235
AluI AGCT 5 cut(s) 26, 43, 114, 211, 235
AlwI GGATC 1 cut(s) 139
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 1 cut(s) 168
AspLEI GCGC 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 198
BccI CCATC 1 cut(s) 355
BceAI ACGGC 4 cut(s) 76, 80, 265, 340
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BfaI CTAG 2 cut(s) 23, 303
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 3 cut(s) 93, 212, 253
BlsI GCNGC 3 cut(s) 94, 213, 254
BmiI GGNNCC 2 cut(s) 76, 283
BmsI GCATC 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 281
BsaHI GRCGYC 2 cut(s) 273, 353
BseMII CTCAG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 77
BseX3I CGGCCG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 198
BseYI CCCAGC 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 1 cut(s) 252
BshNI GGYRCC 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 253
BsnI GGCC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 3 cut(s) 144, 175, 309
BspACI CCGC 4 cut(s) 93, 139, 148, 253
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 76, 283
BspPI GGATC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 74
BssMI GATC 3 cut(s) 144, 175, 309
BssNI GRCGYC 2 cut(s) 273, 353
Bst4CI ACNGT 1 cut(s) 219
BstACI GRCGYC 2 cut(s) 273, 353
BstDEI CTNAG 2 cut(s) 55, 110
BstFNI CGCG 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 3 cut(s) 147, 178, 312
BstMBI GATC 3 cut(s) 144, 175, 309
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 92, 147
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BstZI CGGCCG 1 cut(s) 250
BsuRI GGCC 1 cut(s) 252
CfoI GCGC 1 cut(s) 65
CseI GACGC 2 cut(s) 244, 281
CviAII CATG 1 cut(s) 194
CviJI RGCY 9 cut(s) 26, 43, 114, 155, 211, 235, 252, 263, 306
CviKI_1 RGCY 9 cut(s) 26, 43, 114, 155, 211, 235, 252, 263, 306
DdeI CTNAG 2 cut(s) 55, 110
DpnI GATC 3 cut(s) 146, 177, 311
DpnII GATC 3 cut(s) 144, 175, 309
DrdI GACNNNNNNGTC 1 cut(s) 298
DseDI GACNNNNNNGTC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 250
EagI CGGCCG 1 cut(s) 250
EciI GGCGGA 1 cut(s) 137
EclXI CGGCCG 1 cut(s) 250
Eco52I CGGCCG 1 cut(s) 250
FaeI CATG 1 cut(s) 197
FaiI YATR 3 cut(s) 18, 50, 195
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 93, 212, 253
Fsp4HI GCNGC 3 cut(s) 93, 212, 253
FspBI CTAG 2 cut(s) 23, 303
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 93, 212, 253
GsaI CCCAGC 1 cut(s) 43
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 252
HgaI GACGC 2 cut(s) 244, 281
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 2 cut(s) 273, 353
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
Hpy188I TCNGA 2 cut(s) 205, 223
Hpy99I CGWCG 3 cut(s) 242, 275, 355
HpyAV CCTTC 2 cut(s) 97, 115
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 147
HpyF3I CTNAG 2 cut(s) 55, 110
Hsp92I GRCGYC 2 cut(s) 273, 353
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 3 cut(s) 144, 175, 309
LpnPI CCDG 2 cut(s) 53, 221
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 1 cut(s) 214
MaeI CTAG 2 cut(s) 23, 303
MalI GATC 3 cut(s) 146, 177, 311
MboI GATC 3 cut(s) 144, 175, 309
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 2 cut(s) 100, 168
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 7 cut(s) 119, 139, 146, 169, 238, 254, 305
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 211
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 92, 147
NdeII GATC 3 cut(s) 144, 175, 309
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 2 cut(s) 76, 283
PkrI GCNGC 3 cut(s) 94, 213, 254
PspFI CCCAGC 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 76, 283
PsuI RGATCY 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 211
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 3 cut(s) 93, 212, 253
Sau3AI GATC 3 cut(s) 144, 175, 309
SduI GDGCHC 1 cut(s) 77
SetI ASST 6 cut(s) 28, 45, 116, 213, 237, 287
SfaNI GCATC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 100, 168
SsiI CCGC 4 cut(s) 93, 139, 148, 253
SspMI CTAG 2 cut(s) 23, 303
TaaI ACNGT 1 cut(s) 219
TaqI TCGA 3 cut(s) 8, 174, 350
TasI AATT 2 cut(s) 100, 168
TauI GCSGC 2 cut(s) 95, 255
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseI GCWGC 1 cut(s) 211
TspGWI ACGGA 2 cut(s) 151, 294
XapI RAATTY 1 cut(s) 168
XspI CTAG 2 cut(s) 23, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.