Rh2DG205400

Mitochondrial ubiquitin ligase activator of NFKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002439
Physical Location & Seq
Forward (+)
19198956 .. 19199324
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG205400.1

Sequence Viewer

Length: 369 bp
ATGTCGTCGAACGAGCATACCCTAGCCTCCCTAATCTCCCAGCTTGCCCTTTCCTTAGACGGCGCCGTTTTGGGCACCATTGTCGCCTTCCCCGCCTTCGCCGCCGTCGATTCCTTCCTCAGCTTCAAATCCACTTCCTCCGCCGTCTGCAAGATCCGCCAAGCCCCCTCCATCAAAGTCTCCGATCTCCACTCCCTAATCCACGACGACTGCGACCAGCCGCAGCCGTCCGATGCCTCCAAGGTCGTCGTCCTCTGCGGTAGCGTCCAAGCCACACCCGACGCCGACGGAACCTACAAGACCCTCAAGTCCAGCCCGATCATCAACCCTGAAACTAATGAGAACAGAACACCACCATCGACGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GIDE zf-C3HC4_3

Protein Analysis

122

Amino Acids

12.77

Weight (kDa)

5.09

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 307
AccB1I GGYRCC 2 cut(s) 62, 74
AciI CCGC 6 cut(s) 93, 102, 141, 157, 221, 258
AclWI GGATC 1 cut(s) 148
AcyI GRCGYC 3 cut(s) 63, 282, 362
AgsI TTSAA 1 cut(s) 127
AluBI AGCT 2 cut(s) 43, 123
AluI AGCT 2 cut(s) 43, 123
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 223
AspLEI GCGC 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 77
BanI GGYRCC 2 cut(s) 62, 74
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 235
BccI CCATC 2 cut(s) 179, 364
BceAI ACGGC 6 cut(s) 50, 76, 89, 128, 211, 349
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 1 cut(s) 23
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 3 cut(s) 102, 221, 224
BlsI GCNGC 3 cut(s) 103, 222, 225
BmiI GGNNCC 3 cut(s) 64, 76, 292
BmsI GCATC 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 290
BsaHI GRCGYC 3 cut(s) 63, 282, 362
BsaJI CCNNGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 133
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 1 cut(s) 39
BshNI GGYRCC 2 cut(s) 62, 74
BsmAI GTCTC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 3 cut(s) 153, 184, 318
BspACI CCGC 6 cut(s) 93, 102, 141, 157, 221, 258
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 64, 76, 292
BspPI GGATC 1 cut(s) 148
BspT107I GGYRCC 2 cut(s) 62, 74
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 3 cut(s) 153, 184, 318
BssNI GRCGYC 3 cut(s) 63, 282, 362
BssT1I CCWWGG 1 cut(s) 240
BstACI GRCGYC 3 cut(s) 63, 282, 362
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 55, 119
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 3 cut(s) 156, 187, 321
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 3 cut(s) 153, 184, 318
BstMWI GCNNNNNNNGC 3 cut(s) 92, 101, 156
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 45
CfoI GCGC 1 cut(s) 65
CseI GACGC 2 cut(s) 253, 290
CviJI RGCY 8 cut(s) 26, 43, 123, 164, 220, 226, 272, 315
CviKI_1 RGCY 8 cut(s) 26, 43, 123, 164, 220, 226, 272, 315
DdeI CTNAG 2 cut(s) 55, 119
DinI GGCGCC 1 cut(s) 64
DpnI GATC 3 cut(s) 155, 186, 320
DpnII GATC 3 cut(s) 153, 184, 318
DrdI GACNNNNNNGTC 1 cut(s) 307
DseDI GACNNNNNNGTC 1 cut(s) 307
EciI GGCGGA 2 cut(s) 130, 146
Eco130I CCWWGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 240
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 240
FaiI YATR 1 cut(s) 18
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 102, 221, 224
Fsp4HI GCNGC 3 cut(s) 102, 221, 224
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 102, 221, 224
GsaI CCCAGC 1 cut(s) 43
HaeII RGCGCY 1 cut(s) 66
HgaI GACGC 2 cut(s) 253, 290
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 3 cut(s) 63, 282, 362
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 184, 232
Hpy99I CGWCG 7 cut(s) 10, 110, 209, 251, 284, 290, 364
HpyAV CCTTC 3 cut(s) 97, 106, 124
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 101, 156
HpyF3I CTNAG 2 cut(s) 55, 119
Hsp92I GRCGYC 3 cut(s) 63, 282, 362
HspAI GCGC 1 cut(s) 63
KasI GGCGCC 1 cut(s) 62
Kzo9I GATC 3 cut(s) 153, 184, 318
LpnPI CCDG 4 cut(s) 53, 230, 325, 342
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 23
MalI GATC 3 cut(s) 155, 186, 320
MboI GATC 3 cut(s) 153, 184, 318
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 77
Mly113I GGCGCC 1 cut(s) 63
MnlI CCTC 7 cut(s) 37, 128, 148, 178, 247, 263, 314
MwoI GCNNNNNNNGC 3 cut(s) 92, 101, 156
NarI GGCGCC 1 cut(s) 63
NdeII GATC 3 cut(s) 153, 184, 318
NlaIV GGNNCC 3 cut(s) 64, 76, 292
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 210
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 103, 222, 225
PluTI GGCGCC 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 39
PspN4I GGNNCC 3 cut(s) 64, 76, 292
PsuI RGATCY 1 cut(s) 153
SatI GCNGC 3 cut(s) 102, 221, 224
Sau3AI GATC 3 cut(s) 153, 184, 318
SduI GDGCHC 1 cut(s) 77
SetI ASST 4 cut(s) 45, 125, 246, 296
SfaNI GCATC 1 cut(s) 223
SfoI GGCGCC 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SsiI CCGC 6 cut(s) 93, 102, 141, 157, 221, 258
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 240
TaqI TCGA 3 cut(s) 8, 108, 359
TauI GCSGC 2 cut(s) 104, 223
TfiI GAWTC 1 cut(s) 110
TseI GCWGC 1 cut(s) 223
TspGWI ACGGA 1 cut(s) 303
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.