Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002439

Physical Location & Seq

Genomic Coordinates Reverse (-)

5004245 .. 5005912

Gene Structure 1668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCCGCGCGGTCAAATTTTAAACTCCCTAGTCCCCGGACTCGCCCTCTCCTTCAAAAGCCACCTTGTGGGCTTCGCCCTAGCGTACGCCGCTGTGCTCACTCTCCACAAATTCAGCTCCTACTCTTCAGCCCTACGCAAGATCCGCAAAGCTCCCTCCGTCAAAGTCTCCGGGCTCCGTTCAAACCCAGCGCTCGATCAATCCGACCAGTCCGACGCAAAGCTCATTGTCGTACGAGGCATCGTTGAAGCCAAGTCTGCCTTCGACCGCAAATGGAATAGTTTCAAGTCCGGCGTACTTGTTCAGAATACCCTACATTTTCAGAGAACCCAATCTTGTGTAGTTAGCGATTGGATGGCCCTTTTCGGATGGCGGTCTGATGATAGTATTATTCTTGTTGATCGTGGTTTCGGCCTGAAGTCAATTCTTGATTTTGTTTATCGACATAATCATCATGTTGACGCTTCCCTCTATTCAGCCCTGAAGACACAATTGGCGATAAGTACCCTGTTGGTGTGCTCGATGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIDE zf-C3HC4_3

Protein Analysis

177

Amino Acids

19.45

Weight (kDa)

9.96

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54150 AT1G54150
fragaria_vesca	FvH4_6g34790
malus_domestica	MD02G1089500.v1.1 MD09G1182600.v1.1 MD09G1182700.v1.1 MD09G1182800.v1.1
prunus_persica	Prupe.3G040200_v2.0.a1
pyrus_communis	pycom02g07150 pycom09g09990 pycom09g10000 pycom09g10010 pycom09g10020 pycom10g20170 pycom10g20200
rosa_chinensis	RchiOBHm_Chr2g0145651
rosa_laevigata	RLG00000012894 RLG00000012896 RLG00000020156
rosa_multiflora	Rmu_co8485045.1_g000001 Rmu_sc0000227.1_g000002 Rmu_sc0003046.1_g000004 Rmu_sc0006544.1_g000002 Rmu_sc0009650.1_g000008 Rmu_sc0024073.1_g000001 Rmu_sc0027050.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434660 Rroxscaffold_2G00100580 Rroxscaffold_7G00191020
rosa_rugosa	Rorug02G0392400
rosa_samantha	Rh2AG197700 Rh2AG446800 Rh2BG416100 Rh2BG458500 Rh2CG433500 Rh2DG205400 Rh2DG468100 Rh4AG042900 Rh4CG045900 Rh6AG435700
rosa_wichuraiana	Rw2G036490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	67
AccII	CGCG	2 cut(s)	7, 9
AciI	CCGC	6 cut(s)	5, 9, 90, 145, 268, 373
AclWI	GGATC	1 cut(s)	136
AcsI	RAATTY	2 cut(s)	15, 110
AcuI	CTGAAG	3 cut(s)	111, 437, 503
AdeI	CACNNNGTG	1 cut(s)	67
AfaI	GTAC	4 cut(s)	86, 234, 297, 505
AfeI	AGCGCT	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	4 cut(s)	55, 183, 248, 286
AjiI	CACGTC	1 cut(s)	528
AjuI	GAANNNNNNNTTGG	4 cut(s)	245, 277, 476, 508
AluBI	AGCT	3 cut(s)	117, 152, 223
AluI	AGCT	3 cut(s)	117, 152, 223
Alw21I	GWGCWC	2 cut(s)	99, 521
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	136
Aor51HI	AGCGCT	1 cut(s)	192
AoxI	GGCC	2 cut(s)	357, 412
ApoI	RAATTY	2 cut(s)	15, 110
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	2 cut(s)	9, 193
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	2 cut(s)	36, 172
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	491
Bbv12I	GWGCWC	2 cut(s)	99, 521
BccI	CCATC	2 cut(s)	349, 363
BcnI	CCSGG	2 cut(s)	36, 172
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	2 cut(s)	29, 80
BfoI	RGCGCY	1 cut(s)	194
BisI	GCNGC	2 cut(s)	5, 90
BlsI	GCNGC	2 cut(s)	6, 91
Bme1390I	CCNGG	2 cut(s)	36, 172
BmgBI	CACGTC	1 cut(s)	528
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	36, 172
BmsI	GCATC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	491
BpuMI	CCSGG	2 cut(s)	36, 172
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	2 cut(s)	360, 374
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	187
Bsh1236I	CGCG	2 cut(s)	7, 9
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	359, 414
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	99, 521
BsiSI	CCGG	3 cut(s)	36, 171, 291
BsiWI	CGTACG	2 cut(s)	84, 232
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	2 cut(s)	359, 414
Bsp1286I	GDGCHC	3 cut(s)	99, 177, 521
Bsp143I	GATC	3 cut(s)	141, 196, 400
BspACI	CCGC	6 cut(s)	5, 9, 90, 145, 268, 373
BspANI	GGCC	2 cut(s)	359, 414
BspFNI	CGCG	2 cut(s)	7, 9
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	3 cut(s)	141, 196, 400
Bst6I	CTCTTC	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	360, 374
BstFNI	CGCG	2 cut(s)	7, 9
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	9, 193
BstKTI	GATC	3 cut(s)	144, 199, 403
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	3 cut(s)	141, 196, 400
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 144, 257
BstSCI	CCNGG	2 cut(s)	34, 170
BstUI	CGCG	2 cut(s)	7, 9
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	359, 414
BtrI	CACGTC	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	360, 374
CfoI	GCGC	2 cut(s)	9, 193
Cfr13I	GGNCC	1 cut(s)	358
CseI	GACGC	2 cut(s)	224, 470
Csp6I	GTAC	4 cut(s)	85, 233, 296, 504
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	4 cut(s)	85, 233, 296, 504
DpnI	GATC	3 cut(s)	143, 198, 402
DpnII	GATC	3 cut(s)	141, 196, 400
DraI	TTTAAA	1 cut(s)	21
DraIII	CACNNNGTG	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	177
Eco47III	AGCGCT	1 cut(s)	192
Eco57I	CTGAAG	3 cut(s)	111, 437, 503
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	1 cut(s)	458
FaiI	YATR	2 cut(s)	447, 456
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	5, 90
FokI	GGATG	2 cut(s)	367, 381
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	2 cut(s)	5, 90
FspBI	CTAG	2 cut(s)	29, 80
GlaI	GCGC	2 cut(s)	8, 192
GluI	GCNGC	2 cut(s)	5, 90
GsaI	CCCAGC	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	359, 414
HapII	CCGG	3 cut(s)	36, 171, 291
HgaI	GACGC	2 cut(s)	224, 470
HhaI	GCGC	2 cut(s)	9, 193
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	2 cut(s)	7, 191
HinP1I	GCGC	2 cut(s)	7, 191
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	1 cut(s)	39
HpaII	CCGG	3 cut(s)	36, 171, 291
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	6 cut(s)	205, 214, 306, 324, 368, 379
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	61, 271
HpyCH4IV	ACGT	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 144, 257
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	2 cut(s)	7, 191
Kzo9I	GATC	3 cut(s)	141, 196, 400
LmnI	GCTCC	3 cut(s)	122, 157, 180
LpnPI	CCDG	8 cut(s)	49, 184, 201, 221, 304, 428, 494, 521
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	2 cut(s)	29, 80
MaeII	ACGT	1 cut(s)	527
MalI	GATC	3 cut(s)	143, 198, 402
MboI	GATC	3 cut(s)	141, 196, 400
MboII	GAAGA	2 cut(s)	117, 496
MfeI	CAATTG	1 cut(s)	491
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	3 cut(s)	99, 177, 521
MluCI	AATT	4 cut(s)	15, 110, 423, 491
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	2 cut(s)	228, 237
MnlI	CCTC	4 cut(s)	56, 166, 230, 479
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	3 cut(s)	36, 171, 291
MspR9I	CCNGG	2 cut(s)	36, 172
MunI	CAATTG	1 cut(s)	491
MvnI	CGCG	2 cut(s)	7, 9
MwoI	GCNNNNNNNGC	3 cut(s)	89, 144, 257
NciI	CCSGG	2 cut(s)	36, 172
NdeII	GATC	3 cut(s)	141, 196, 400
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	281
Pfl23II	CGTACG	2 cut(s)	84, 232
PflMI	CCANNNNNTGG	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	6, 91
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	187
PspLI	CGTACG	2 cut(s)	84, 232
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	141
RsaI	GTAC	4 cut(s)	86, 234, 297, 505
RsaNI	GTAC	4 cut(s)	85, 233, 296, 504
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	2 cut(s)	5, 90
Sau3AI	GATC	3 cut(s)	141, 196, 400
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	36, 172
SduI	GDGCHC	3 cut(s)	99, 177, 521
SetI	ASST	5 cut(s)	66, 119, 154, 225, 530
SfaNI	GCATC	1 cut(s)	249
Sse9I	AATT	4 cut(s)	15, 110, 423, 491
SsiI	CCGC	6 cut(s)	5, 9, 90, 145, 268, 373
SspMI	CTAG	2 cut(s)	29, 80
StyD4I	CCNGG	2 cut(s)	34, 170
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	4 cut(s)	195, 264, 442, 521
TasI	AATT	4 cut(s)	15, 110, 423, 491
TauI	GCSGC	2 cut(s)	7, 92
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TspGWI	ACGGA	2 cut(s)	148, 167
Van91I	CCANNNNNTGG	1 cut(s)	67
XapI	RAATTY	2 cut(s)	15, 110
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	2 cut(s)	29, 80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.