Rh2BG416100

Mitochondrial ubiquitin ligase activator of NFKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002439
Physical Location & Seq
Reverse (-)
58754691 .. 58755161
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG416100.1

Sequence Viewer

Length: 471 bp
ATGAGACGAACTCCGTCGTACGGACGCCACTGCAACTCCAGCTCCGATGCTCGGAGCAAGCCTGACCGCTACCCCTACTCGCCTACCCCCTCATCCTACTCCGACGCATTCATTGCACGCAAGTCCACCTCCGGCCAGACCACCTCCGCCCTCCGCAAGATCCGCCAAGCCCCCTCCGTCAAAGTCTCCGATCTCCGCTCCCTTATCCACGAAGACTCCGACCAACCGCAGCCGTCTGATGCCTCCAAGCTAGTCGTCCTCCGCGGCCGCGTCCAAGCCACACCCAACGCCGACGGAACCTATAAGAGCCTCAAGTCCAGCCCGATCATCAACCCCGATAATAACGAGAACACCACCATCGACGCCGTCATCGTTCAGAGGACGCAACGGGTGTGTTTAGCGTTTTTGATTTTCGTTCTTGCTAAGCAAGTTTCGGAGTCACAAATCCGAGTCACCGGCGCCGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GIDE zf-C3HC4_3

Protein Analysis

156

Amino Acids

17.13

Weight (kDa)

9.94

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 458
AccBSI CCGCTC 1 cut(s) 198
AccII CGCG 2 cut(s) 264, 270
AciI CCGC 9 cut(s) 67, 147, 154, 163, 196, 227, 262, 264, 268
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 2 cut(s) 133, 265
AcyI GRCGYC 3 cut(s) 25, 363, 459
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 20, 51
AluBI AGCT 2 cut(s) 42, 250
AluI AGCT 2 cut(s) 42, 250
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 1 cut(s) 154
AoxI GGCC 2 cut(s) 133, 265
ApeKI GCWGC 1 cut(s) 229
AspLEI GCGC 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 445
BanI GGYRCC 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 365
BceAI ACGGC 2 cut(s) 217, 350
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 462
BisI GCNGC 3 cut(s) 230, 265, 268
BlpI GCTNAGC 1 cut(s) 423
BlsI GCNGC 3 cut(s) 231, 266, 269
BmiI GGNNCC 2 cut(s) 298, 460
BmsI GCATC 2 cut(s) 37, 229
BpiI GAAGAC 1 cut(s) 219
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 22
Bpu1102I GCTNAGC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 296
BsaHI GRCGYC 3 cut(s) 25, 363, 459
BsaJI CCNNGG 1 cut(s) 262
BsaXI ACNNNNNCTCC 6 cut(s) 20, 26, 50, 56, 200, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 51
Bse118I RCCGGY 2 cut(s) 455, 461
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 20, 51
BseMI GCAATG 1 cut(s) 111
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 241
Bsh1236I CGCG 2 cut(s) 264, 270
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 135, 267
BshNI GGYRCC 1 cut(s) 458
BsiEI CGRYCG 1 cut(s) 268
BsiSI CCGG 3 cut(s) 132, 456, 462
BsiWI CGTACG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 20, 51
BsmAI GTCTC 1 cut(s) 190
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 2 cut(s) 135, 267
Bsp143I GATC 3 cut(s) 159, 190, 324
Bsp1720I GCTNAGC 1 cut(s) 423
BspACI CCGC 9 cut(s) 67, 147, 154, 163, 196, 227, 262, 264, 268
BspANI GGCC 2 cut(s) 135, 267
BspFNI CGCG 2 cut(s) 264, 270
BspLI GGNNCC 2 cut(s) 298, 460
BspPI GGATC 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 458
BsrBI CCGCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 455, 461
BssAI RCCGGY 2 cut(s) 455, 461
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 3 cut(s) 159, 190, 324
BssNI GRCGYC 3 cut(s) 25, 363, 459
BstACI GRCGYC 3 cut(s) 25, 363, 459
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 3 cut(s) 59, 118, 463
BstDEI CTNAG 1 cut(s) 423
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 92
BstFNI CGCG 2 cut(s) 264, 270
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 1 cut(s) 461
BstKTI GATC 3 cut(s) 162, 193, 327
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 3 cut(s) 159, 190, 324
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 3 cut(s) 39, 113, 162
BstUI CGCG 2 cut(s) 264, 270
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BstZI CGGCCG 1 cut(s) 265
BsuRI GGCC 2 cut(s) 135, 267
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 1 cut(s) 92
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 3 cut(s) 59, 118, 463
CciNI GCGGCCGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 461
Cfr10I RCCGGY 2 cut(s) 455, 461
Cfr42I CCGCGG 1 cut(s) 265
CseI GACGC 5 cut(s) 33, 113, 259, 371, 391
Csp6I GTAC 1 cut(s) 19
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 423
DinI GGCGCC 1 cut(s) 460
DpnI GATC 3 cut(s) 161, 192, 326
DpnII GATC 3 cut(s) 159, 190, 324
EaeI YGGCCR 2 cut(s) 133, 265
EagI CGGCCG 1 cut(s) 265
EciI GGCGGA 2 cut(s) 136, 152
EclXI CGGCCG 1 cut(s) 265
Eco52I CGGCCG 1 cut(s) 265
EgeI GGCGCC 1 cut(s) 460
EheI GGCGCC 1 cut(s) 460
FaiI YATR 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 230, 265, 268
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 3 cut(s) 230, 265, 268
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 460
GluI GCNGC 3 cut(s) 230, 265, 268
GsuI CTGGAG 1 cut(s) 22
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 2 cut(s) 135, 267
HapII CCGG 3 cut(s) 132, 456, 462
HgaI GACGC 5 cut(s) 33, 113, 259, 371, 391
HhaI GCGC 1 cut(s) 461
Hin1I GRCGYC 3 cut(s) 25, 363, 459
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HinfI GANTC 3 cut(s) 215, 437, 450
HpaII CCGG 3 cut(s) 132, 456, 462
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 9 cut(s) 46, 54, 103, 190, 220, 238, 378, 436, 449
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 4 cut(s) 19, 107, 296, 365
HpyCH4V TGCA 2 cut(s) 33, 116
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 113, 162
HpyF3I CTNAG 1 cut(s) 423
Hsp92I GRCGYC 3 cut(s) 25, 363, 459
HspAI GCGC 1 cut(s) 459
KasI GGCGCC 1 cut(s) 458
KroI GCCGGC 1 cut(s) 461
KroNI GCCGGC 1 cut(s) 463
KspI CCGCGG 1 cut(s) 265
Kzo9I GATC 3 cut(s) 159, 190, 324
LmnI GCTCC 3 cut(s) 47, 54, 203
LpnPI CCDG 5 cut(s) 52, 75, 145, 149, 331
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 2 cut(s) 37, 229
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 438, 451
MalI GATC 3 cut(s) 161, 192, 326
MbiI CCGCTC 1 cut(s) 198
MboI GATC 3 cut(s) 159, 190, 324
MboII GAAGA 1 cut(s) 224
MflI RGATCY 1 cut(s) 159
Mly113I GGCGCC 1 cut(s) 459
MlyI GAGTC 3 cut(s) 209, 446, 459
MmeI TCCRAC 2 cut(s) 126, 243
MnlI CCTC 9 cut(s) 100, 139, 154, 161, 184, 253, 269, 320, 372
MroNI GCCGGC 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 264
MspI CCGG 3 cut(s) 132, 456, 462
Mva1269I GAATGC 1 cut(s) 107
MvnI CGCG 2 cut(s) 264, 270
MwoI GCNNNNNNNGC 3 cut(s) 39, 113, 162
NaeI GCCGGC 1 cut(s) 463
NarI GGCGCC 1 cut(s) 459
NdeII GATC 3 cut(s) 159, 190, 324
NgoMIV GCCGGC 1 cut(s) 461
NlaIV GGNNCC 2 cut(s) 298, 460
NmuCI GTSAC 2 cut(s) 438, 451
NotI GCGGCCGC 1 cut(s) 265
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 369
PctI GAATGC 1 cut(s) 107
PdiI GCCGGC 1 cut(s) 463
Pfl23II CGTACG 1 cut(s) 18
PflFI GACNNNGTC 1 cut(s) 365
PkrI GCNGC 3 cut(s) 231, 266, 269
PleI GAGTC 3 cut(s) 209, 445, 458
PluTI GGCGCC 1 cut(s) 462
PpsI GAGTC 3 cut(s) 209, 445, 458
PspLI CGTACG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 298, 460
PsuI RGATCY 1 cut(s) 159
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SacII CCGCGG 1 cut(s) 265
SatI GCNGC 3 cut(s) 230, 265, 268
Sau3AI GATC 3 cut(s) 159, 190, 324
SchI GAGTC 3 cut(s) 209, 446, 459
SetI ASST 5 cut(s) 44, 131, 146, 252, 302
SfaNI GCATC 2 cut(s) 37, 229
SfoI GGCGCC 1 cut(s) 460
Sfr303I CCGCGG 1 cut(s) 265
SgrAI CRCCGGYG 1 cut(s) 455
SgrBI CCGCGG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SsiI CCGC 9 cut(s) 67, 147, 154, 163, 196, 227, 262, 264, 268
SspDI GGCGCC 1 cut(s) 458
SspMI CTAG 1 cut(s) 251
TaqI TCGA 1 cut(s) 360
TauI GCSGC 2 cut(s) 267, 270
TscAI CASTG 1 cut(s) 35
TseFI GTSAC 2 cut(s) 438, 451
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 2 cut(s) 438, 451
TspDTI ATGAA 1 cut(s) 100
TspGWI ACGGA 3 cut(s) 36, 166, 309
TspRI CASTG 1 cut(s) 35
Tth111I GACNNNGTC 1 cut(s) 365
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.