Rh2CG433500

Mitochondrial ubiquitin ligase activator of NFKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002439
Physical Location & Seq
Reverse (-)
58937861 .. 58941258
3398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG433500.1

Sequence Viewer

Length: 897 bp
ATGTCGTCGAACGAGCATACCCTAGCCTCCCTAATCTCCCAGCTCGTCCTCTCCTTAGACGGCGCCGTTTTGGGCACCATCGTCGCCTTCGCCGCCGTCGATTCCTTCCTCAACTTCAAATCCACCACCTCCGCCCTCCGCAAGATCCGCCAAGCCCCCTCCGTCAAAGTCTCCGATCTCCGCTCCCTAATCCACGAAGACTCCGATCAACCGCAGCCGTCCAGTGTCTCCAAGCTCGTCGTCCTCCGCGGCCGCGTCCAAGCCACACCCGATGCCGACGGAACCTACAAGAGCCTTAAGTCTAGCCCGATCATCAACCCCGATAATAACGAGAACACCACCATCGACGCCGTCATCGTTCAGAGGACGCAACGGCTTTTGTATAACGAGTGGAAGGGTTTTCTTTGGCGGACTTATGATTTGAGAGCTAAATTGGCCAAACCTTGGAGAGAACAAGAATCCAGCACGATCAAAGCGGTTCCTTTTGTTCTTGGTGAAGCTGGGAATTCCGATTTCGTTGTTCCGAATTTCGATGGCTTAGGACATCCCTTGCCTCTTGTGACAGTTTATCAGCAAAAGCAGCTCTTCAATCCTAGTCCCTTTACATTCCTGCAGAGAATTTTTGGACATGATTACCCAATCGGTCTACAAGATGAAGAAAAGGTTCTTCCATTGGGAGTCGAAGTCAGTGCTGTTGGTATCTGCAGTTTCCAAAATGGGATACCAGAAATCAAGTCATGCCGTGATCTTCCCTATTTTATGTCTTTGATGGATAAGGATGAGTTGGTTCTACATCTTGAACACAAGACAAACACATTATTCTGGTTTGGGGTTGGTTTTGGTTTGTTGTCAGTTGGAATCCTCTGCTATGCTGGTACAAGGTACACTATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GIDE zf-C3HC4_3

Protein Analysis

298

Amino Acids

33.09

Weight (kDa)

6.31

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIDE PF12483 147 - 286 3.2e-28 E3 Ubiquitin ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 62, 74
AccB7I CCANNNNNTGG 1 cut(s) 444
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 646
AccII CGCG 2 cut(s) 249, 255
AclWI GGATC 1 cut(s) 139
AcoI YGGCCR 2 cut(s) 250, 435
AcsI RAATTY 3 cut(s) 505, 526, 618
AcyI GRCGYC 2 cut(s) 63, 348
AfaI GTAC 2 cut(s) 877, 884
AfiI CCNNNNNNNGG 1 cut(s) 444
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 3 cut(s) 118, 589, 800
AluBI AGCT 5 cut(s) 43, 235, 428, 500, 583
AluI AGCT 5 cut(s) 43, 235, 428, 500, 583
Alw26I GTCTC 2 cut(s) 175, 232
AlwI GGATC 1 cut(s) 139
AoxI GGCC 2 cut(s) 250, 435
ApeKI GCWGC 2 cut(s) 214, 580
ApoI RAATTY 3 cut(s) 505, 526, 618
ArsI GACNNNNNNTTYG 2 cut(s) 403, 435
Asp700I GAANNNNTTC 1 cut(s) 663
AspLEI GCGC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 77
BalI TGGCCA 1 cut(s) 437
BanI GGYRCC 2 cut(s) 62, 74
BbsI GAAGAC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 226, 592
BccI CCATC 4 cut(s) 86, 350, 527, 763
BceAI ACGGC 7 cut(s) 50, 76, 80, 202, 335, 389, 726
BcgI CGANNNNNNTGC 4 cut(s) 64, 98, 671, 705
BciVI GTATCC 1 cut(s) 714
BcoDI GTCTC 2 cut(s) 175, 232
BfaI CTAG 3 cut(s) 23, 303, 594
BfmI CTRYAG 2 cut(s) 611, 703
BfoI RGCGCY 1 cut(s) 66
BfrI CTTAAG 1 cut(s) 296
BfuI GTATCC 1 cut(s) 714
BisI GCNGC 5 cut(s) 93, 215, 250, 253, 581
BlsI GCNGC 5 cut(s) 94, 216, 251, 254, 582
BmiI GGNNCC 4 cut(s) 64, 76, 283, 480
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 538
BsaHI GRCGYC 2 cut(s) 63, 348
BsaJI CCNNGG 2 cut(s) 247, 443
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 669, 699
Bsc4I CCNNNNNNNGG 1 cut(s) 444
Bse1I ACTGG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 247, 443
BseGI GGATG 2 cut(s) 544, 784
BseLI CCNNNNNNNGG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 77
BseX3I CGGCCG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 226, 592
BseYI CCCAGC 2 cut(s) 39, 500
Bsh1236I CGCG 2 cut(s) 249, 255
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 2 cut(s) 252, 437
BshNI GGYRCC 2 cut(s) 62, 74
BsiEI CGRYCG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 444
BsmAI GTCTC 2 cut(s) 175, 232
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 2 cut(s) 252, 437
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 6 cut(s) 144, 175, 205, 309, 468, 745
BspANI GGCC 2 cut(s) 252, 437
BspFNI CGCG 2 cut(s) 249, 255
BspHI TCATGA 1 cut(s) 893
BspLI GGNNCC 4 cut(s) 64, 76, 283, 480
BspMAI CTGCAG 2 cut(s) 615, 707
BspPI GGATC 1 cut(s) 139
BspQI GCTCTTC 1 cut(s) 590
BspT107I GGYRCC 2 cut(s) 62, 74
BspTI CTTAAG 1 cut(s) 296
BsrBI CCGCTC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 2 cut(s) 247, 443
BssMI GATC 6 cut(s) 144, 175, 205, 309, 468, 745
BssNI GRCGYC 2 cut(s) 63, 348
BssT1I CCWWGG 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 565
Bst6I CTCTTC 1 cut(s) 590
BstACI GRCGYC 2 cut(s) 63, 348
BstAFI CTTAAG 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 55, 538
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 2 cut(s) 544, 784
BstFNI CGCG 2 cut(s) 249, 255
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 6 cut(s) 147, 178, 208, 312, 471, 748
BstMAI GTCTC 2 cut(s) 175, 232
BstMBI GATC 6 cut(s) 144, 175, 205, 309, 468, 745
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 4 cut(s) 92, 147, 434, 580
BstSFI CTRYAG 2 cut(s) 611, 703
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 2 cut(s) 249, 255
BstV1I GCAGC 2 cut(s) 226, 592
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BstZI CGGCCG 1 cut(s) 250
BsuI GTATCC 1 cut(s) 714
BsuRI GGCC 2 cut(s) 252, 437
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 2 cut(s) 544, 784
BtsIMutI CAGTG 2 cut(s) 229, 694
CciI TCATGA 1 cut(s) 893
CciNI GCGGCCGC 1 cut(s) 250
CfoI GCGC 1 cut(s) 65
Cfr42I CCGCGG 1 cut(s) 250
CseI GACGC 3 cut(s) 244, 356, 376
Csp6I GTAC 2 cut(s) 876, 883
CviAII CATG 3 cut(s) 629, 738, 894
CviQI GTAC 2 cut(s) 876, 883
DdeI CTNAG 2 cut(s) 55, 538
DinI GGCGCC 1 cut(s) 64
DpnI GATC 6 cut(s) 146, 177, 207, 311, 470, 747
DpnII GATC 6 cut(s) 144, 175, 205, 309, 468, 745
EaeI YGGCCR 2 cut(s) 250, 435
EagI CGGCCG 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 590
EarI CTCTTC 1 cut(s) 590
EciI GGCGGA 3 cut(s) 121, 137, 424
EclXI CGGCCG 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 443
Eco52I CGGCCG 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 443
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 3 cut(s) 632, 741, 897
FaiI YATR 8 cut(s) 18, 384, 417, 630, 739, 761, 870, 895
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 1 cut(s) 582
FatI CATG 3 cut(s) 628, 737, 893
FblI GTMKAC 1 cut(s) 646
Fnu4HI GCNGC 5 cut(s) 93, 215, 250, 253, 581
FokI GGATG 2 cut(s) 531, 791
Fsp4HI GCNGC 5 cut(s) 93, 215, 250, 253, 581
FspBI CTAG 3 cut(s) 23, 303, 594
GlaI GCGC 1 cut(s) 64
GluI GCNGC 5 cut(s) 93, 215, 250, 253, 581
GsaI CCCAGC 2 cut(s) 43, 504
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 252, 437
HgaI GACGC 3 cut(s) 244, 356, 376
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 2 cut(s) 63, 348
Hin1II CATG 3 cut(s) 632, 741, 897
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 5 cut(s) 101, 200, 458, 678, 858
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 2 cut(s) 647, 885
Hpy188I TCNGA 5 cut(s) 175, 205, 363, 511, 525
Hpy188III TCNNGA 2 cut(s) 797, 894
Hpy8I GTNNAC 2 cut(s) 647, 885
Hpy99I CGWCG 6 cut(s) 10, 86, 101, 242, 281, 350
HpyAV CCTTC 3 cut(s) 97, 115, 388
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4V TGCA 2 cut(s) 613, 705
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 147, 434, 580
HpyF3I CTNAG 2 cut(s) 55, 538
Hsp92I GRCGYC 2 cut(s) 63, 348
Hsp92II CATG 3 cut(s) 632, 741, 897
HspAI GCGC 1 cut(s) 63
KasI GGCGCC 1 cut(s) 62
KspI CCGCGG 1 cut(s) 250
Kzo9I GATC 6 cut(s) 144, 175, 205, 309, 468, 745
LguI GCTCTTC 1 cut(s) 590
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 8 cut(s) 53, 235, 475, 486, 623, 738, 808, 858
Lsp1109I GCAGC 2 cut(s) 226, 592
LweI GCATC 1 cut(s) 262
MaeI CTAG 3 cut(s) 23, 303, 594
MaeIII GTNAC 1 cut(s) 559
MalI GATC 6 cut(s) 146, 177, 207, 311, 470, 747
MbiI CCGCTC 1 cut(s) 183
MboI GATC 6 cut(s) 144, 175, 205, 309, 468, 745
MboII GAAGA 5 cut(s) 209, 577, 659, 668, 740
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 77
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 4 cut(s) 431, 505, 526, 618
MluNI TGGCCA 1 cut(s) 437
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 2 cut(s) 194, 687
MmeI TCCRAC 1 cut(s) 835
Mox20I TGGCCA 1 cut(s) 437
MroXI GAANNNNTTC 1 cut(s) 663
MscI TGGCCA 1 cut(s) 437
MseI TTAA 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 249
MspCI CTTAAG 1 cut(s) 296
MvnI CGCG 2 cut(s) 249, 255
MwoI GCNNNNNNNGC 4 cut(s) 92, 147, 434, 580
NarI GGCGCC 1 cut(s) 63
NdeII GATC 6 cut(s) 144, 175, 205, 309, 468, 745
NlaIII CATG 3 cut(s) 632, 741, 897
NlaIV GGNNCC 4 cut(s) 64, 76, 283, 480
NmuCI GTSAC 1 cut(s) 559
NotI GCGGCCGC 1 cut(s) 250
PagI TCATGA 1 cut(s) 893
PciSI GCTCTTC 1 cut(s) 590
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 201, 354
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 3 cut(s) 101, 458, 858
PflFI GACNNNGTC 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 444
PkrI GCNGC 5 cut(s) 94, 216, 251, 254, 582
PleI GAGTC 2 cut(s) 194, 686
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 2 cut(s) 194, 686
PspFI CCCAGC 2 cut(s) 39, 500
PspN4I GGNNCC 4 cut(s) 64, 76, 283, 480
PstI CTGCAG 2 cut(s) 615, 707
PsuI RGATCY 1 cut(s) 144
PsyI GACNNNGTC 1 cut(s) 350
RsaI GTAC 2 cut(s) 877, 884
RsaNI GTAC 2 cut(s) 876, 883
SacII CCGCGG 1 cut(s) 250
SapI GCTCTTC 1 cut(s) 590
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 5 cut(s) 93, 215, 250, 253, 581
Sau3AI GATC 6 cut(s) 144, 175, 205, 309, 468, 745
SchI GAGTC 2 cut(s) 194, 687
SduI GDGCHC 1 cut(s) 77
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 2 cut(s) 611, 703
SfoI GGCGCC 1 cut(s) 64
Sfr303I CCGCGG 1 cut(s) 250
SgrBI CCGCGG 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 4 cut(s) 431, 505, 526, 618
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 3 cut(s) 23, 303, 594
StyI CCWWGG 1 cut(s) 443
TaaI ACNGT 1 cut(s) 565
TaqI TCGA 5 cut(s) 8, 99, 345, 531, 681
TaqII GACCGA 1 cut(s) 632
TasI AATT 4 cut(s) 431, 505, 526, 618
TauI GCSGC 3 cut(s) 95, 252, 255
TfiI GAWTC 3 cut(s) 101, 458, 858
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 2 cut(s) 229, 694
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 2 cut(s) 214, 580
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 1 cut(s) 669
TspGWI ACGGA 2 cut(s) 151, 294
TspRI CASTG 2 cut(s) 229, 694
Tth111I GACNNNGTC 1 cut(s) 350
Van91I CCANNNNNTGG 1 cut(s) 444
Vha464I CTTAAG 1 cut(s) 296
XapI RAATTY 3 cut(s) 505, 526, 618
XmiI GTMKAC 1 cut(s) 646
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 3 cut(s) 23, 303, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.