Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002439

Physical Location & Seq

Genomic Coordinates Forward (+)

23572268 .. 23575511

Gene Structure 3244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012896

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGTTATGCTACTGAAGTACTTCATTTGCCTGGAATATCTAAAAGGTTGGAGTTTGATTTGGCCATGCAGAGCAGTGATTTGAAAAGAGCTCTCCAGTGCCTTCTCACAATGAGCAACAACAGGGACTTGGGGCAAGATAATTCAGGATTTGATTTGAAGGACGTTCTTCATGAATCAAGAGGACAAGCTCTTCGGTTAGCCAATCATGGAAAGTTGACACAGCATAGCATATGCTATCTATATCTGGACATGCTTATTTTGCTTTCTATAACCTCTAAACCACCGATACTCTCATCGCCACATGCAGAAACCACCACCGCAATATCGTCGAACGACCATACCCTAGCCTCCCTAATCTCCCAGCTCGCCCTCTCCTTAGACGGCGCCATTTTGCATACCATTGTCGCCTTCGCCGTCGTCGATTCCTTCCTCAGCTTCAAATCCACTTCCTCCGCCCTCCGCAAGATTCGCCAAGCCCCCTCCGTCAAAGTCTTCGATCTCCGCTCCCTAATCCACGACGACTTCGACCAGCCGCAGCCGTCTGATGCCTCCAAGCTCGTCGGAATTCCTCAAAGCTTTCCTTATCAGGGAGGGTCCAATCCCCTGACAGTTCTAAGAAATCAACCTCATGGCCTGATTGGGTCTCTACGACCTGACCTGGGAATGGGTTTTGGTTGGCTGGGCTGGTGTGGATCTGTGGTGCCGAATGGAGGATGGCATGATGTTGGCGGCGGTCAGTCTCCGGTGGAGAGTGTCTCGGATTGCGCAACAGAGGTGGTGGCGAGTGCTTCGGCGCTGGTTTGTTGGGCTTGCGAGGATAGAGGTGGAGGTGGTGGGCCGGGGGATGTGTTCTGTCGAGGCTTGGCCGGTGGTGCTTGGCAGGCGATGCTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

300

Amino Acids

31.77

Weight (kDa)

5.89

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54150 AT1G54150
fragaria_vesca	FvH4_6g34790
malus_domestica	MD02G1089500.v1.1 MD09G1182600.v1.1 MD09G1182700.v1.1 MD09G1182800.v1.1
prunus_persica	Prupe.3G040200_v2.0.a1
pyrus_communis	pycom02g07150 pycom09g09990 pycom09g10000 pycom09g10010 pycom09g10020 pycom10g20170 pycom10g20200
rosa_chinensis	RchiOBHm_Chr2g0145651
rosa_laevigata	RLG00000012894 RLG00000012896 RLG00000020156
rosa_multiflora	Rmu_co8485045.1_g000001 Rmu_sc0000227.1_g000002 Rmu_sc0003046.1_g000004 Rmu_sc0006544.1_g000002 Rmu_sc0009650.1_g000008 Rmu_sc0024073.1_g000001 Rmu_sc0027050.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434660 Rroxscaffold_2G00100580 Rroxscaffold_7G00191020
rosa_rugosa	Rorug02G0392400
rosa_samantha	Rh2AG197700 Rh2AG446800 Rh2BG416100 Rh2BG458500 Rh2CG433500 Rh2DG205400 Rh2DG468100 Rh4AG042900 Rh4CG045900 Rh6AG435700
rosa_wichuraiana	Rw2G036490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	769
AccB1I	GGYRCC	2 cut(s)	386, 703
AccBSI	CCGCTC	1 cut(s)	507
AciI	CCGC	7 cut(s)	321, 456, 463, 505, 536, 732, 735
AclWI	GGATC	1 cut(s)	703
AcoI	YGGCCR	2 cut(s)	63, 867
AcsI	RAATTY	1 cut(s)	567
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	4 cut(s)	590, 662, 667, 713
AgsI	TTSAA	3 cut(s)	85, 160, 442
AjnI	CCWGG	2 cut(s)	31, 660
AluBI	AGCT	6 cut(s)	92, 191, 367, 438, 559, 579
AluI	AGCT	6 cut(s)	92, 191, 367, 438, 559, 579
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	3 cut(s)	651, 747, 763
AlwI	GGATC	1 cut(s)	703
AoxI	GGCC	4 cut(s)	63, 634, 839, 867
ApeKI	GCWGC	1 cut(s)	538
ApoI	RAATTY	1 cut(s)	567
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
Asp700I	GAANNNNTTC	1 cut(s)	21
AspLEI	GCGC	3 cut(s)	389, 770, 799
AspS9I	GGNCC	2 cut(s)	597, 839
AsuC2I	CCSGG	1 cut(s)	843
AvaII	GGWCC	1 cut(s)	597
BalI	TGGCCA	1 cut(s)	65
BanI	GGYRCC	2 cut(s)	386, 703
BanII	GRGCYC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	94
BbvCI	CCTCAGC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	1 cut(s)	711
BceAI	ACGGC	3 cut(s)	400, 401, 526
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BciT130I	CCWGG	2 cut(s)	33, 662
BcnI	CCSGG	1 cut(s)	843
BcoDI	GTCTC	3 cut(s)	651, 747, 763
BfaI	CTAG	1 cut(s)	347
BfoI	RGCGCY	2 cut(s)	390, 800
BisI	GCNGC	3 cut(s)	536, 539, 733
BlsI	GCNGC	3 cut(s)	537, 540, 734
BmcAI	AGTACT	1 cut(s)	21
Bme1390I	CCNGG	3 cut(s)	33, 662, 843
Bme18I	GGWCC	1 cut(s)	597
BmgT120I	GGNCC	2 cut(s)	597, 839
BmiI	GGNNCC	3 cut(s)	388, 598, 705
BmrFI	CCNGG	3 cut(s)	33, 662, 843
BmsI	GCATC	2 cut(s)	538, 879
BpiI	GAAGAC	1 cut(s)	487
BplI	GAGNNNNNCTC	2 cut(s)	743, 775
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	843
BsaHI	GRCGYC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	651
BsaJI	CCNNGG	2 cut(s)	661, 842
BsaWI	WCCGGW	1 cut(s)	745
Bsc4I	CCNNNNNNNGG	4 cut(s)	590, 662, 667, 713
Bse118I	RCCGGY	1 cut(s)	869
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	33, 662
BseDI	CCNNGG	2 cut(s)	661, 842
BseGI	GGATG	2 cut(s)	722, 853
BseLI	CCNNNNNNNGG	4 cut(s)	590, 662, 667, 713
BseMII	CTCAG	1 cut(s)	448
BseNI	ACTGG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	550
BseYI	CCCAGC	2 cut(s)	363, 682
BshFI	GGCC	4 cut(s)	65, 636, 841, 869
BshNI	GGYRCC	2 cut(s)	386, 703
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	3 cut(s)	746, 842, 870
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	4 cut(s)	590, 662, 667, 713
BsmAI	GTCTC	3 cut(s)	651, 747, 763
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	4 cut(s)	65, 636, 841, 869
Bso31I	GGTCTC	1 cut(s)	651
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	499, 695
BspACI	CCGC	7 cut(s)	321, 456, 463, 505, 536, 732, 735
BspANI	GGCC	4 cut(s)	65, 636, 841, 869
BspCNI	CTCAG	1 cut(s)	447
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	388, 598, 705
BspPI	GGATC	1 cut(s)	703
BspQI	GCTCTTC	1 cut(s)	198
BspT107I	GGYRCC	2 cut(s)	386, 703
BspTNI	GGTCTC	1 cut(s)	651
BsrBI	CCGCTC	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	869
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	869
BssECI	CCNNGG	2 cut(s)	661, 842
BssMI	GATC	2 cut(s)	499, 695
BssNI	GRCGYC	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	33, 662
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	387
BstAPI	GCANNNNNTGC	1 cut(s)	889
BstC8I	GCNNGC	3 cut(s)	369, 814, 885
BstDEI	CTNAG	3 cut(s)	379, 434, 617
BstF5I	GGATG	2 cut(s)	722, 853
BstH2I	RGCGCY	2 cut(s)	390, 800
BstHHI	GCGC	3 cut(s)	389, 770, 799
BstKTI	GATC	2 cut(s)	502, 698
BstMAI	GTCTC	3 cut(s)	651, 747, 763
BstMBI	GATC	2 cut(s)	499, 695
BstMWI	GCNNNNNNNGC	5 cut(s)	262, 471, 875, 884, 889
BstNI	CCWGG	2 cut(s)	33, 662
BstNSI	RCATGY	2 cut(s)	256, 308
BstSCI	CCNGG	3 cut(s)	31, 660, 841
BstV1I	GCAGC	1 cut(s)	550
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	695
BstYI	RGATCY	1 cut(s)	695
BsuRI	GGCC	4 cut(s)	65, 636, 841, 869
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	722, 853
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	82, 104
Cac8I	GCNNGC	3 cut(s)	369, 814, 885
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	3 cut(s)	389, 770, 799
Cfr10I	RCCGGY	1 cut(s)	869
Cfr13I	GGNCC	2 cut(s)	597, 839
Csp6I	GTAC	1 cut(s)	20
CspCI	CAANNNNNGTGG	2 cut(s)	759, 794
CviAII	CATG	7 cut(s)	67, 173, 209, 253, 305, 632, 722
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	3 cut(s)	379, 434, 617
DinI	GGCGCC	1 cut(s)	388
DpnI	GATC	2 cut(s)	501, 697
DpnII	GATC	2 cut(s)	499, 695
EaeI	YGGCCR	2 cut(s)	63, 867
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	445
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	597
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	31, 660
EcoT38I	GRGCYC	1 cut(s)	94
EgeI	GGCGCC	1 cut(s)	388
EheI	GGCGCC	1 cut(s)	388
FaeI	CATG	7 cut(s)	70, 176, 212, 256, 308, 635, 725
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	7 cut(s)	66, 172, 208, 252, 304, 631, 721
FauNDI	CATATG	1 cut(s)	233
Fnu4HI	GCNGC	3 cut(s)	536, 539, 733
FokI	GGATG	2 cut(s)	729, 860
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	3 cut(s)	536, 539, 733
FspBI	CTAG	1 cut(s)	347
FspI	TGCGCA	1 cut(s)	769
GlaI	GCGC	3 cut(s)	388, 769, 798
GluI	GCNGC	3 cut(s)	536, 539, 733
GsaI	CCCAGC	2 cut(s)	367, 686
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	2 cut(s)	390, 800
HaeIII	GGCC	4 cut(s)	65, 636, 841, 869
HapII	CCGG	3 cut(s)	746, 842, 870
HhaI	GCGC	3 cut(s)	389, 770, 799
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	7 cut(s)	70, 176, 212, 256, 308, 635, 725
Hin6I	GCGC	3 cut(s)	387, 768, 797
HinP1I	GCGC	3 cut(s)	387, 768, 797
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	3 cut(s)	176, 425, 469
HpaII	CCGG	3 cut(s)	746, 842, 870
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	3 cut(s)	547, 566, 763
Hpy188III	TCNNGA	4 cut(s)	147, 173, 180, 248
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	5 cut(s)	334, 422, 425, 524, 566
HpyAV	CCTTC	4 cut(s)	113, 154, 421, 439
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	3 cut(s)	70, 308, 397
HpyF10VI	GCNNNNNNNGC	5 cut(s)	262, 471, 875, 884, 889
HpyF3I	CTNAG	3 cut(s)	379, 434, 617
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	7 cut(s)	70, 176, 212, 256, 308, 635, 725
HspAI	GCGC	3 cut(s)	387, 768, 797
KasI	GGCGCC	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	499, 695
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	512
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	2 cut(s)	538, 879
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	165
MalI	GATC	2 cut(s)	501, 697
MbiI	CCGCTC	1 cut(s)	507
MboI	GATC	2 cut(s)	499, 695
MboII	GAAGA	3 cut(s)	161, 185, 487
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	1 cut(s)	94
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	2 cut(s)	142, 567
MluNI	TGGCCA	1 cut(s)	65
Mly113I	GGCGCC	1 cut(s)	387
MmeI	TCCRAC	2 cut(s)	30, 544
Mox20I	TGGCCA	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	3 cut(s)	746, 842, 870
MspR9I	CCNGG	3 cut(s)	33, 662, 843
MvaI	CCWGG	2 cut(s)	33, 662
MwoI	GCNNNNNNNGC	5 cut(s)	262, 471, 875, 884, 889
NarI	GGCGCC	1 cut(s)	387
NciI	CCSGG	1 cut(s)	843
NdeI	CATATG	1 cut(s)	233
NdeII	GATC	2 cut(s)	499, 695
NlaIII	CATG	7 cut(s)	70, 176, 212, 256, 308, 635, 725
NlaIV	GGNNCC	3 cut(s)	388, 598, 705
NsbI	TGCGCA	1 cut(s)	769
NspI	RCATGY	2 cut(s)	256, 308
PagI	TCATGA	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	3 cut(s)	414, 420, 525
PdmI	GAANNNNTTC	1 cut(s)	21
PfeI	GAWTC	3 cut(s)	176, 425, 469
PkrI	GCNGC	3 cut(s)	537, 540, 734
PluTI	GGCGCC	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	31, 660
PspFI	CCCAGC	2 cut(s)	363, 682
PspGI	CCWGG	2 cut(s)	31, 660
PspN4I	GGNNCC	3 cut(s)	388, 598, 705
PspPI	GGNCC	2 cut(s)	597, 839
PsuI	RGATCY	1 cut(s)	695
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	198
SatI	GCNGC	3 cut(s)	536, 539, 733
Sau3AI	GATC	2 cut(s)	499, 695
Sau96I	GGNCC	2 cut(s)	597, 839
ScaI	AGTACT	1 cut(s)	21
ScrFI	CCNGG	3 cut(s)	33, 662, 843
SduI	GDGCHC	1 cut(s)	94
SfaNI	GCATC	2 cut(s)	538, 879
SfoI	GGCGCC	1 cut(s)	388
SinI	GGWCC	1 cut(s)	597
Sse9I	AATT	2 cut(s)	142, 567
SsiI	CCGC	7 cut(s)	321, 456, 463, 505, 536, 732, 735
SspDI	GGCGCC	1 cut(s)	386
SspMI	CTAG	1 cut(s)	347
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	3 cut(s)	31, 660, 841
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	5 cut(s)	332, 423, 498, 528, 859
TasI	AATT	2 cut(s)	142, 567
TatI	WGTACW	1 cut(s)	19
TauI	GCSGC	2 cut(s)	538, 735
TfiI	GAWTC	3 cut(s)	176, 425, 469
TscAI	CASTG	2 cut(s)	82, 104
TseI	GCWGC	1 cut(s)	538
TspDTI	ATGAA	3 cut(s)	14, 161, 189
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	2 cut(s)	82, 104
VpaK11BI	GGWCC	1 cut(s)	597
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	2 cut(s)	256, 308
XmnI	GAANNNNTTC	1 cut(s)	21
XspI	CTAG	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.