Rmu_sc0027050.1_g000002

Mitochondrial ubiquitin ligase activator of NFKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027050.1
OG0002439
Physical Location & Seq
Forward (+)
13688 .. 14765
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027050.1_g000002.1.cds

Sequence Viewer

Length: 372 bp
atggatcttcttcctgttgtcattatcaccccagaaaaagcctgcacagagttgcttaccatctccttagacgacgctgttttgggcaccattgtcgccttcgccgccgtcaattccttcctcagcttcaaatccacttcctctgccctccgcaagatccgccaagccccctccgtcaaagtctctgatctccactccctaatccatgactactccgaccagctgcaaccgtctaatgcctccaagctcgtcgtcctctgcggccgcgtccaagccacacccgacgccaacggaacctacaagaccctcaagtctagcccgatcatgaaccccgaaactaataagaacagaataccaccatcgacgccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GIDE zf-C3HC4_3

Protein Analysis

123

Amino Acids

13.22

Weight (kDa)

8.64

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 86
AccII CGCG 1 cut(s) 267
AciI CCGC 5 cut(s) 105, 151, 160, 261, 265
AclWI GGATC 2 cut(s) 12, 151
AcoI YGGCCR 1 cut(s) 262
AcyI GRCGYC 2 cut(s) 285, 365
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 3 cut(s) 126, 223, 247
AluI AGCT 3 cut(s) 126, 223, 247
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 2 cut(s) 12, 151
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 86
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 210
BccI CCATC 2 cut(s) 68, 367
BceAI ACGGC 2 cut(s) 92, 352
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 315
BisI GCNGC 4 cut(s) 105, 224, 262, 265
BlsI GCNGC 4 cut(s) 106, 225, 263, 266
BmiI GGNNCC 2 cut(s) 88, 295
Bpu10I CCTNAGC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 293
BsaHI GRCGYC 2 cut(s) 285, 365
BseMII CTCAG 1 cut(s) 136
BseSI GKGCMC 1 cut(s) 89
BseX3I CGGCCG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 210
BsgI GTGCAG 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 86
BsiEI CGRYCG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 187
BsnI GGCC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 4 cut(s) 4, 156, 187, 321
BspACI CCGC 5 cut(s) 105, 151, 160, 261, 265
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 135
BspFNI CGCG 1 cut(s) 267
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 88, 295
BspPI GGATC 2 cut(s) 12, 151
BspT107I GGYRCC 1 cut(s) 86
BssMI GATC 4 cut(s) 4, 156, 187, 321
BssNI GRCGYC 2 cut(s) 285, 365
Bst4CI ACNGT 1 cut(s) 231
BstACI GRCGYC 2 cut(s) 285, 365
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 67, 122
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 4 cut(s) 7, 159, 190, 324
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 4 cut(s) 4, 156, 187, 321
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 2 cut(s) 104, 159
BstSLI GKGCMC 1 cut(s) 89
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 4, 156
BstYI RGATCY 2 cut(s) 4, 156
BstZI CGGCCG 1 cut(s) 262
BsuRI GGCC 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 43
CciI TCATGA 1 cut(s) 324
CciNI GCGGCCGC 1 cut(s) 262
CseI GACGC 3 cut(s) 83, 256, 293
CviAII CATG 2 cut(s) 206, 325
CviJI RGCY 8 cut(s) 41, 126, 167, 223, 247, 264, 275, 318
CviKI_1 RGCY 8 cut(s) 41, 126, 167, 223, 247, 264, 275, 318
DdeI CTNAG 2 cut(s) 67, 122
DpnI GATC 4 cut(s) 6, 158, 189, 323
DpnII GATC 4 cut(s) 4, 156, 187, 321
DrdI GACNNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 262
EagI CGGCCG 1 cut(s) 262
EciI GGCGGA 1 cut(s) 149
EclXI CGGCCG 1 cut(s) 262
Eco52I CGGCCG 1 cut(s) 262
FaeI CATG 2 cut(s) 209, 328
FaiI YATR 2 cut(s) 207, 326
FatI CATG 2 cut(s) 205, 324
Fnu4HI GCNGC 4 cut(s) 105, 224, 262, 265
Fsp4HI GCNGC 4 cut(s) 105, 224, 262, 265
FspBI CTAG 1 cut(s) 315
GluI GCNGC 4 cut(s) 105, 224, 262, 265
HaeIII GGCC 1 cut(s) 264
HgaI GACGC 3 cut(s) 83, 256, 293
Hin1I GRCGYC 2 cut(s) 285, 365
Hin1II CATG 2 cut(s) 209, 328
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 187, 217
Hpy188III TCNNGA 1 cut(s) 325
Hpy99I CGWCG 4 cut(s) 77, 254, 287, 367
HpyAV CCTTC 2 cut(s) 109, 127
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 45, 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 159
HpyF3I CTNAG 2 cut(s) 67, 122
Hsp92I GRCGYC 2 cut(s) 285, 365
Hsp92II CATG 2 cut(s) 209, 328
Kzo9I GATC 4 cut(s) 4, 156, 187, 321
LpnPI CCDG 4 cut(s) 27, 45, 55, 233
Lsp1109I GCAGC 1 cut(s) 210
MaeI CTAG 1 cut(s) 315
MalI GATC 4 cut(s) 6, 158, 189, 323
MboI GATC 4 cut(s) 4, 156, 187, 321
MflI RGATCY 2 cut(s) 4, 156
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 7 cut(s) 131, 151, 158, 181, 250, 266, 317
MspA1I CMGCKG 1 cut(s) 223
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 104, 159
NdeII GATC 4 cut(s) 4, 156, 187, 321
NlaIII CATG 2 cut(s) 209, 328
NlaIV GGNNCC 2 cut(s) 88, 295
NotI GCGGCCGC 1 cut(s) 262
PagI TCATGA 1 cut(s) 324
PkrI GCNGC 4 cut(s) 106, 225, 263, 266
PspN4I GGNNCC 2 cut(s) 88, 295
PsuI RGATCY 2 cut(s) 4, 156
PvuII CAGCTG 1 cut(s) 223
SatI GCNGC 4 cut(s) 105, 224, 262, 265
Sau3AI GATC 4 cut(s) 4, 156, 187, 321
SduI GDGCHC 1 cut(s) 89
SetI ASST 4 cut(s) 128, 225, 249, 299
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 112
SsiI CCGC 5 cut(s) 105, 151, 160, 261, 265
SspMI CTAG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 362
TasI AATT 1 cut(s) 112
TauI GCSGC 3 cut(s) 107, 264, 267
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 2 cut(s) 163, 306
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.