pycom09g10000

Mitochondrial ubiquitin ligase activator of NFKB

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
8082625 .. 8085471
2847 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10000.2

Sequence Viewer

Length: 1371 bp
ATGAAGCTTTATGCGAAGCGTATGCCACTGTCCTTATTGGTAATTTCGGGCCACATAGTAAACATCAGTTTCTTGAGGGTTGCGGTACTTGACACGAACGCAAATACAACACGATTCACAAACTCGATTGTGAGCGGAGAGAGTTTGACTTCGGGACATGAAGAAAACTTATCCCATCTAGTCCTGTCCTATCCAATCCTCTATGTCAAACAACTGCATTTGTACAACCTGGTTGGTAAAAGTGAAATTTACTTGCATTGGTGTTGCAAAATTAACCGCCAAACGCACATCATTAACATAACCGAGTGTCAGAAACCAAACGACAACTACCACAATGTCGTCGGACAACAATGCCATCATCTCACTACTCTCGCAACTCGTCCTCTCCTGGGACGGCGCTGTTTTGGGCGTCGCCCTCGCTTGCGCCGCCGTGCGCTCCGTCCTCAACTTCACCGCCGCCTCCTCAGCCCTAAGAAATATCCGTCAGGCCCCAGCCGTCAAAGTCTCCGATCGATCCGCTCAATCCTCCCCCTTGATCACTCGGACAAGCTCGTCGTTGTACGCGGCACCGTCGAAGCGAAGTCCCTCGTCGACGGCACATGGACGACCTTCAAGTCCGGCGTACTCGTCTCCAAAGATACAAATGACAGAGCCGTCATCCTTCAGAGTACTAAGACGGTTCCTTTCGTTCTTGTTGATGGTGATCAATGGCCGATTCGGGATATGGTGGTTGTGAATGTAGATCGATCAAGCCATCCCATACCTCTTACGATAGCTTATCATCATTTGCAACCTGTAAATCCTTCTCCATTTTCATTCTTGAAGGCACTTTTCGGCACTAACTACCCTATTGGTGTCCTCACTGTTGACAAGATTCTTCCGGTGGGAAAGGAGATTAGTGCTGTGGGTCTATGCAGTTTGAAAAATGGAGTCTCGGAAATCAAGTTCTGCAACGATCTTCCCTATTTTCTCTCTGAGATGTCTAGGGATGAGATGGTTGGAGATCTTGCATCAAGCACAAGAATGCTGTTCTGGACTGCATTTGTTCTTGGTTCAATGTCAGTTGGAGTCCTTAGCTATGCAGTTGTGAGGAATTGGAATAAATGGAAAGTGTGGAGGCAACAAAGGCAGTTACAGCAATCAAGCCGGGCTGCTGACAGCGATACTGAAGCTGAAATTGAAGAAGAGGATGTTCCGGAGGGACAGGTGTGTGTCATATGTCTAACGAGGAGAAGACGATCAGCATTCATTCCTTGTGGGCATCGAGTCTGTTGCCACCCCTGTAGCACATCAATCGAACGGGACATAGCACCGAAGTGTCCTGTTTGTCGGCAGGAGATCCGCACTTCACTGCGTGTATATGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

457

Amino Acids

51.64

Weight (kDa)

9.53

Isoelectric Point (pI)

62.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 551, 613, 653
AccB1I GGYRCC 1 cut(s) 566
AccBSI CCGCTC 2 cut(s) 135, 519
AccI GTMKAC 1 cut(s) 591
AccII CGCG 1 cut(s) 564
AccIII TCCGGA 1 cut(s) 1195
AciI CCGC 9 cut(s) 83, 135, 277, 427, 454, 457, 517, 564, 1342
AclWI GGATC 2 cut(s) 508, 1333
AcoI YGGCCR 1 cut(s) 710
AcsI RAATTY 1 cut(s) 246
AcuI CTGAAG 2 cut(s) 647, 1188
AcyI GRCGYC 1 cut(s) 409
AdeI CACNNNGTG 1 cut(s) 1355
AfaI GTAC 5 cut(s) 87, 224, 561, 624, 670
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 5 cut(s) 613, 823, 922, 1056, 1181
AjnI CCWGG 2 cut(s) 228, 387
AleI CACNNNNGTG 1 cut(s) 1315
AloI GAACNNNNNNTCC 2 cut(s) 929, 961
AluBI AGCT 5 cut(s) 7, 550, 776, 1077, 1172
AluI AGCT 5 cut(s) 7, 550, 776, 1077, 1172
Alw26I GTCTC 3 cut(s) 509, 634, 937
AlwI GGATC 2 cut(s) 508, 1333
Aor13HI TCCGGA 1 cut(s) 1195
AoxI GGCC 3 cut(s) 49, 487, 710
ApeKI GCWGC 1 cut(s) 1151
ApoI RAATTY 1 cut(s) 246
AspLEI GCGC 3 cut(s) 399, 426, 436
AspS9I GGNCC 2 cut(s) 49, 488
AsuC2I CCSGG 1 cut(s) 1148
AsuHPI GGTGA 2 cut(s) 443, 713
BanI GGYRCC 1 cut(s) 566
BbsI GAAGAC 1 cut(s) 1240
BbvCI CCTCAGC 1 cut(s) 464
BbvI GCAGC 1 cut(s) 1138
BccI CCATC 5 cut(s) 183, 363, 692, 762, 988
BceAI ACGGC 5 cut(s) 410, 414, 480, 610, 638
BcgI CGANNNNNNTGC 6 cut(s) 4, 38, 1254, 1276, 1288, 1310
BciT130I CCWGG 2 cut(s) 230, 389
BclI TGATCA 2 cut(s) 535, 703
BcnI CCSGG 1 cut(s) 1148
BcoDI GTCTC 3 cut(s) 509, 634, 937
BfaI CTAG 2 cut(s) 179, 984
BfmI CTRYAG 1 cut(s) 1282
BfoI RGCGCY 1 cut(s) 400
BglII AGATCT 1 cut(s) 1003
BisI GCNGC 4 cut(s) 427, 457, 565, 1152
BlsI GCNGC 4 cut(s) 428, 458, 566, 1153
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 3 cut(s) 230, 389, 1148
BmgT120I GGNCC 2 cut(s) 49, 488
BmiI GGNNCC 3 cut(s) 490, 568, 681
BmrFI CCNGG 3 cut(s) 230, 389, 1148
BmsI GCATC 2 cut(s) 1019, 1270
BpiI GAAGAC 1 cut(s) 1240
Bpu10I CCTNAGC 2 cut(s) 464, 1073
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 1 cut(s) 1148
Bsa29I ATCGAT 2 cut(s) 512, 745
BsaBI GATNNNNATC 1 cut(s) 702
BsaHI GRCGYC 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 388
BsaWI WCCGGW 2 cut(s) 880, 1195
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse8I GATNNNNATC 1 cut(s) 702
BseAI TCCGGA 1 cut(s) 1195
BseBI CCWGG 2 cut(s) 230, 389
BseCI ATCGAT 2 cut(s) 512, 745
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 4 cut(s) 657, 754, 994, 1195
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 2 cut(s) 478, 966
BseRI GAGGAG 2 cut(s) 452, 1243
BseXI GCAGC 1 cut(s) 1138
BseYI CCCAGC 1 cut(s) 491
Bsh1236I CGCG 1 cut(s) 564
Bsh1285I CGRYCG 1 cut(s) 512
BshFI GGCC 3 cut(s) 51, 489, 712
BshNI GGYRCC 1 cut(s) 566
BshVI ATCGAT 2 cut(s) 512, 745
BsiEI CGRYCG 1 cut(s) 512
BsiSI CCGG 4 cut(s) 618, 881, 1147, 1196
BslFI GGGAC 5 cut(s) 168, 405, 568, 1215, 1316
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 3 cut(s) 509, 634, 937
BsmBI CGTCTC 1 cut(s) 634
BsmFI GGGAC 5 cut(s) 168, 405, 568, 1215, 1316
BsmI GAATGC 2 cut(s) 1029, 1244
BsnI GGCC 3 cut(s) 51, 489, 712
Bsp13I TCCGGA 1 cut(s) 1195
Bsp1407I TGTACA 1 cut(s) 222
BspACI CCGC 9 cut(s) 83, 135, 277, 427, 454, 457, 517, 564, 1342
BspANI GGCC 3 cut(s) 51, 489, 712
BspCNI CTCAG 2 cut(s) 477, 967
BspDI ATCGAT 2 cut(s) 512, 745
BspEI TCCGGA 1 cut(s) 1195
BspFNI CGCG 1 cut(s) 564
BspLI GGNNCC 3 cut(s) 490, 568, 681
BspPI GGATC 2 cut(s) 508, 1333
BspT107I GGYRCC 1 cut(s) 566
BsrBI CCGCTC 2 cut(s) 135, 519
BsrGI TGTACA 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 388
BssNI GRCGYC 1 cut(s) 409
Bst2UI CCWGG 2 cut(s) 230, 389
Bst4CI ACNGT 4 cut(s) 30, 571, 679, 865
Bst6I CTCTTC 1 cut(s) 1179
BstACI GRCGYC 1 cut(s) 409
BstAUI TGTACA 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 422
BstDEI CTNAG 5 cut(s) 464, 471, 672, 975, 1073
BstF5I GGATG 4 cut(s) 657, 754, 994, 1195
BstFNI CGCG 1 cut(s) 564
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 3 cut(s) 399, 426, 436
BstMAI GTCTC 3 cut(s) 509, 634, 937
BstMCI CGRYCG 1 cut(s) 512
BstMWI GCNNNNNNNGC 4 cut(s) 426, 465, 1126, 1135
BstNI CCWGG 2 cut(s) 230, 389
BstSCI CCNGG 3 cut(s) 228, 387, 1146
BstSFI CTRYAG 1 cut(s) 1282
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 1138
BstV2I GAAGAC 1 cut(s) 1240
BstX2I RGATCY 2 cut(s) 1003, 1338
BstYI RGATCY 2 cut(s) 1003, 1338
Bsu15I ATCGAT 2 cut(s) 512, 745
BsuRI GGCC 3 cut(s) 51, 489, 712
BsuTUI ATCGAT 2 cut(s) 512, 745
BtsCI GGATG 4 cut(s) 657, 754, 994, 1195
BtsI GCAGTG 1 cut(s) 1349
BtsIMutI CAGTG 3 cut(s) 26, 861, 1349
Cac8I GCNNGC 1 cut(s) 422
CfoI GCGC 3 cut(s) 399, 426, 436
Cfr13I GGNCC 2 cut(s) 49, 488
ClaI ATCGAT 2 cut(s) 512, 745
CseI GACGC 1 cut(s) 398
CsiI ACCWGGT 1 cut(s) 228
Csp6I GTAC 5 cut(s) 86, 223, 560, 623, 669
CviAII CATG 2 cut(s) 158, 600
CviQI GTAC 5 cut(s) 86, 223, 560, 623, 669
DdeI CTNAG 5 cut(s) 464, 471, 672, 975, 1073
DraIII CACNNNGTG 1 cut(s) 1355
DrdI GACNNNNNNGTC 3 cut(s) 551, 613, 653
DseDI GACNNNNNNGTC 3 cut(s) 551, 613, 653
EaeI YGGCCR 1 cut(s) 710
Eam1104I CTCTTC 1 cut(s) 1179
EarI CTCTTC 1 cut(s) 1179
Eco57I CTGAAG 2 cut(s) 647, 1188
EcoO109I RGGNCCY 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 228, 387
Esp3I CGTCTC 1 cut(s) 634
FaeI CATG 2 cut(s) 161, 603
FaqI GGGAC 5 cut(s) 168, 405, 568, 1215, 1316
FatI CATG 2 cut(s) 157, 599
FauNDI CATATG 1 cut(s) 1217
FbaI TGATCA 2 cut(s) 535, 703
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 4 cut(s) 427, 457, 565, 1152
FokI GGATG 4 cut(s) 644, 741, 1001, 1202
Fsp4HI GCNGC 4 cut(s) 427, 457, 565, 1152
FspBI CTAG 2 cut(s) 179, 984
GlaI GCGC 3 cut(s) 398, 425, 435
GluI GCNGC 4 cut(s) 427, 457, 565, 1152
GsaI CCCAGC 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 3 cut(s) 51, 489, 712
HapII CCGG 4 cut(s) 618, 881, 1147, 1196
HgaI GACGC 1 cut(s) 398
HhaI GCGC 3 cut(s) 399, 426, 436
Hin1I GRCGYC 1 cut(s) 409
Hin1II CATG 2 cut(s) 161, 603
Hin6I GCGC 3 cut(s) 397, 424, 434
HinP1I GCGC 3 cut(s) 397, 424, 434
HincII GTYRAC 2 cut(s) 592, 868
HindII GTYRAC 2 cut(s) 592, 868
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 7 cut(s) 114, 715, 874, 930, 1068, 1266, 1364
HpaII CCGG 4 cut(s) 618, 881, 1147, 1196
HphI GGTGA 2 cut(s) 443, 713
Hpy166II GTNNAC 3 cut(s) 61, 592, 868
Hpy188I TCNGA 7 cut(s) 312, 344, 509, 544, 666, 937, 976
Hpy188III TCNNGA 6 cut(s) 73, 153, 719, 820, 1033, 1196
Hpy8I GTNNAC 3 cut(s) 61, 592, 868
Hpy99I CGWCG 6 cut(s) 344, 414, 557, 575, 593, 596
HpyAV CCTTC 4 cut(s) 619, 671, 813, 817
HpyCH4III ACNGT 4 cut(s) 30, 571, 679, 865
HpyCH4V TGCA 9 cut(s) 217, 256, 267, 790, 915, 951, 1010, 1040, 1082
HpyF10VI GCNNNNNNNGC 4 cut(s) 426, 465, 1126, 1135
HpyF3I CTNAG 5 cut(s) 464, 471, 672, 975, 1073
Hsp92I GRCGYC 1 cut(s) 409
Hsp92II CATG 2 cut(s) 161, 603
HspAI GCGC 3 cut(s) 397, 424, 434
Kpn2I TCCGGA 1 cut(s) 1195
Ksp22I TGATCA 2 cut(s) 535, 703
LmnI GCTCC 1 cut(s) 441
Lsp1109I GCAGC 1 cut(s) 1138
LweI GCATC 2 cut(s) 1019, 1270
MabI ACCWGGT 1 cut(s) 228
MaeI CTAG 2 cut(s) 179, 984
MaeIII GTNAC 1 cut(s) 1131
MbiI CCGCTC 2 cut(s) 135, 519
MboII GAAGA 6 cut(s) 173, 869, 950, 1193, 1196, 1245
MflI RGATCY 2 cut(s) 1003, 1338
MluCI AATT 5 cut(s) 42, 246, 270, 1093, 1176
MlyI GAGTC 3 cut(s) 939, 1077, 1275
MmeI TCCRAC 3 cut(s) 322, 979, 1045
MroI TCCGGA 1 cut(s) 1195
MseI TTAA 3 cut(s) 273, 294, 1369
MslI CAYNNNNRTG 2 cut(s) 1022, 1315
MspI CCGG 4 cut(s) 618, 881, 1147, 1196
MspR9I CCNGG 3 cut(s) 230, 389, 1148
Mva1269I GAATGC 2 cut(s) 1029, 1244
MvaI CCWGG 2 cut(s) 230, 389
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 4 cut(s) 426, 465, 1126, 1135
NciI CCSGG 1 cut(s) 1148
NdeI CATATG 1 cut(s) 1217
NlaIII CATG 2 cut(s) 161, 603
NlaIV GGNNCC 3 cut(s) 490, 568, 681
OliI CACNNNNGTG 1 cut(s) 1315
PctI GAATGC 2 cut(s) 1029, 1244
PfeI GAWTC 4 cut(s) 114, 715, 874, 1364
PkrI GCNGC 4 cut(s) 428, 458, 566, 1153
Ple19I CGATCG 1 cut(s) 512
PleI GAGTC 3 cut(s) 938, 1076, 1274
PpsI GAGTC 3 cut(s) 938, 1076, 1274
Psp6I CCWGG 2 cut(s) 228, 387
PspFI CCCAGC 1 cut(s) 491
PspGI CCWGG 2 cut(s) 228, 387
PspN4I GGNNCC 3 cut(s) 490, 568, 681
PspPI GGNCC 2 cut(s) 49, 488
PsuI RGATCY 2 cut(s) 1003, 1338
PvuI CGATCG 1 cut(s) 512
RsaI GTAC 5 cut(s) 87, 224, 561, 624, 670
RsaNI GTAC 5 cut(s) 86, 223, 560, 623, 669
RseI CAYNNNNRTG 2 cut(s) 1022, 1315
SalI GTCGAC 1 cut(s) 590
SaqAI TTAA 3 cut(s) 273, 294, 1369
SatI GCNGC 4 cut(s) 427, 457, 565, 1152
Sau96I GGNCC 2 cut(s) 49, 488
ScaI AGTACT 1 cut(s) 670
SchI GAGTC 3 cut(s) 939, 1077, 1275
ScrFI CCNGG 3 cut(s) 230, 389, 1148
SexAI ACCWGGT 1 cut(s) 228
SfaNI GCATC 2 cut(s) 1019, 1270
SfcI CTRYAG 1 cut(s) 1282
SgrDI CGTCGACG 1 cut(s) 590
SmiMI CAYNNNNRTG 2 cut(s) 1022, 1315
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 5 cut(s) 42, 246, 270, 1093, 1176
SsiI CCGC 9 cut(s) 83, 135, 277, 427, 454, 457, 517, 564, 1342
SspMI CTAG 2 cut(s) 179, 984
StyD4I CCNGG 3 cut(s) 228, 387, 1146
TaaI ACNGT 4 cut(s) 30, 571, 679, 865
TaqI TCGA 7 cut(s) 125, 512, 573, 591, 745, 1264, 1296
TasI AATT 5 cut(s) 42, 246, 270, 1093, 1176
TatI WGTACW 2 cut(s) 222, 668
TauI GCSGC 3 cut(s) 429, 459, 567
TfiI GAWTC 4 cut(s) 114, 715, 874, 1364
Tru1I TTAA 3 cut(s) 273, 294, 1369
Tru9I TTAA 3 cut(s) 273, 294, 1369
TscAI CASTG 3 cut(s) 33, 868, 1356
TseI GCWGC 1 cut(s) 1151
TspDTI ATGAA 4 cut(s) 17, 174, 804, 1237
TspGWI ACGGA 2 cut(s) 428, 471
TspRI CASTG 3 cut(s) 33, 868, 1356
XapI RAATTY 1 cut(s) 246
XmiI GTMKAC 1 cut(s) 591
XspI CTAG 2 cut(s) 179, 984
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.