RLG00000012894

CONTAINS InterPro DOMAIN s WD40 repeat-like (InterPro IPR011046), WD40 repeat, region (InterPro IPR017986), WD40 repeat (InterPro IPR001680), WD40 YVTN repeat-like (InterPro IPR015943)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002439
Physical Location & Seq
Forward (+)
23553289 .. 23554001
713 bp
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UTR
Exon/CDS
Intron
RLM00000012894

Sequence Viewer

Length: 372 bp
ATGCAGAGCAGTGATTTGAAAAGAGCTCTCCAGTGCCTTCTCACAATGAGCAACAGCAGGGACTTGGGGCAAGATAATTCAGGATTTGATTTGAAGGACATTCTTCATGAATTAAGAGGACAAGCTCTTCGGTTAGCCAATCATGGAGAGTTGACACGGCATAGCATATGCTATCCATATCTGGACCTTATTTTGCTTTTTGGTGCTTCCAATTATTTTAATTTGCACAATTTGATAAACAATTTAACATCCATTGGTGCTGAACGGGAAGCAGCATTCGCAGCTGCAGTTTTGGGAGACAATGCCCTCATGGAGAAGGCTTGGCAGGATACTGGAATGCTTGCTGAGGCTGTGCTTCATGCCCATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

124

Amino Acids

13.59

Weight (kDa)

5.56

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 19, 94
AluBI AGCT 3 cut(s) 26, 125, 284
AluI AGCT 3 cut(s) 26, 125, 284
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 291
ApeKI GCWGC 3 cut(s) 272, 281, 284
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AspS9I GGNCC 1 cut(s) 184
AvaII GGWCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 28
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 3 cut(s) 271, 284, 293
BceAI ACGGC 1 cut(s) 173
BciVI GTATCC 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 285
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 3 cut(s) 273, 282, 285
BlsI GCNGC 3 cut(s) 274, 283, 286
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 345
Bse1I ACTGG 2 cut(s) 31, 337
BseGI GGATG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 2 cut(s) 31, 337
BseXI GCAGC 3 cut(s) 271, 284, 293
BsiHKAI GWGCWC 1 cut(s) 28
BslFI GGGAC 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 74
BsmI GAATGC 2 cut(s) 275, 342
Bsp1286I GDGCHC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 337
BspHI TCATGA 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 289
BspQI GCTCTTC 1 cut(s) 132
BsrI ACTGG 2 cut(s) 31, 337
Bst6I CTCTTC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 248
BstMAI GTCTC 1 cut(s) 291
BstMWI GCNNNNNNNGC 2 cut(s) 278, 281
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 271, 284, 293
BsuI GTATCC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 248
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 2 cut(s) 16, 38
Cac8I GCNNGC 1 cut(s) 342
CciI TCATGA 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 184
CviAII CATG 5 cut(s) 107, 143, 310, 359, 365
CviJI RGCY 6 cut(s) 26, 125, 137, 284, 320, 350
CviKI_1 RGCY 6 cut(s) 26, 125, 137, 284, 320, 350
DdeI CTNAG 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 28
FaeI CATG 5 cut(s) 110, 146, 313, 362, 368
FaqI GGGAC 1 cut(s) 74
FatI CATG 5 cut(s) 106, 142, 309, 358, 364
FauNDI CATATG 1 cut(s) 167
Fnu4HI GCNGC 3 cut(s) 273, 282, 285
FokI GGATG 1 cut(s) 235
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 3 cut(s) 273, 282, 285
GluI GCNGC 3 cut(s) 273, 282, 285
GsuI CTGGAG 1 cut(s) 14
Hin1II CATG 5 cut(s) 110, 146, 313, 362, 368
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 153
Hpy188III TCNNGA 3 cut(s) 81, 107, 182
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 3 cut(s) 47, 88, 310
HpyCH4V TGCA 3 cut(s) 4, 226, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 281
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 5 cut(s) 110, 146, 313, 362, 368
LguI GCTCTTC 1 cut(s) 132
LpnPI CCDG 6 cut(s) 43, 44, 66, 167, 311, 318
Lsp1109I GCAGC 3 cut(s) 271, 284, 293
MboII GAAGA 2 cut(s) 95, 119
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 6 cut(s) 76, 110, 211, 220, 229, 241
MnlI CCTC 3 cut(s) 110, 317, 340
MseI TTAA 3 cut(s) 113, 219, 245
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 284
Mva1269I GAATGC 2 cut(s) 275, 342
MwoI GCNNNNNNNGC 2 cut(s) 278, 281
NdeI CATATG 1 cut(s) 167
NlaIII CATG 5 cut(s) 110, 146, 313, 362, 368
PagI TCATGA 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 132
PctI GAATGC 2 cut(s) 275, 342
PkrI GCNGC 3 cut(s) 274, 283, 286
Psp124BI GAGCTC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 184
PstI CTGCAG 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 284
RseI CAYNNNNRTG 1 cut(s) 363
SacI GAGCTC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 3 cut(s) 113, 219, 245
SatI GCNGC 3 cut(s) 273, 282, 285
Sau96I GGNCC 1 cut(s) 184
SduI GDGCHC 1 cut(s) 28
SetI ASST 4 cut(s) 28, 127, 189, 286
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 363
Sse9I AATT 6 cut(s) 76, 110, 211, 220, 229, 241
SstI GAGCTC 1 cut(s) 28
TasI AATT 6 cut(s) 76, 110, 211, 220, 229, 241
Tru1I TTAA 3 cut(s) 113, 219, 245
Tru9I TTAA 3 cut(s) 113, 219, 245
TscAI CASTG 2 cut(s) 16, 38
TseI GCWGC 3 cut(s) 272, 281, 284
TspDTI ATGAA 3 cut(s) 95, 123, 347
TspRI CASTG 2 cut(s) 16, 38
VpaK11BI GGWCC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.