Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009650.1

Orthogroup ID

OG0002439

Physical Location & Seq

Genomic Coordinates Forward (+)

32604 .. 33624

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009650.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgtcgtcgaacgagtataccctagcctccttaatctcccagctcgccctctccttagacggcgccgttttgggcaccattgtcgccttcccctccttcgcagccgtcgattccttcctcagcttcaaatccacttcctccgccctccgcaagatccgccaagccccctccgtcaaagtctccgatctccactccctaatccacgacgactccgaccagccgcagcagtccgatgcctccaaggtcgtcgtcctctgcagccgcatgacatgtcagcttggtagtgaagtccaagcagattctagcactgcttgttatagcagagaagccgagtgtgacaatataacgggaacggtggccggaaggggtcaccaaaatgggtatgccgctaacgcttgttacgtcttctacactcccagtaatccaacaccagtaccacagagaggaagtagaaaccgacgcggttcaaatggcaccggtgcggaggaggcaaatggaggccggacaactgagaacccgccagatcagtgtctcgagtcaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIDE zf-C3HC4_3

Protein Analysis

181

Amino Acids

19.08

Weight (kDa)

5.3

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54150 AT1G54150
fragaria_vesca	FvH4_6g34790
malus_domestica	MD02G1089500.v1.1 MD09G1182600.v1.1 MD09G1182700.v1.1 MD09G1182800.v1.1
prunus_persica	Prupe.3G040200_v2.0.a1
pyrus_communis	pycom02g07150 pycom09g09990 pycom09g10000 pycom09g10010 pycom09g10020 pycom10g20170 pycom10g20200
rosa_chinensis	RchiOBHm_Chr2g0145651
rosa_laevigata	RLG00000012894 RLG00000012896 RLG00000020156
rosa_multiflora	Rmu_co8485045.1_g000001 Rmu_sc0000227.1_g000002 Rmu_sc0003046.1_g000004 Rmu_sc0006544.1_g000002 Rmu_sc0009650.1_g000008 Rmu_sc0024073.1_g000001 Rmu_sc0027050.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434660 Rroxscaffold_2G00100580 Rroxscaffold_7G00191020
rosa_rugosa	Rorug02G0392400
rosa_samantha	Rh2AG197700 Rh2AG446800 Rh2BG416100 Rh2BG458500 Rh2CG433500 Rh2DG205400 Rh2DG468100 Rh4AG042900 Rh4CG045900 Rh6AG435700
rosa_wichuraiana	Rw2G036490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	62, 74, 473
AccI	GTMKAC	1 cut(s)	17
AccII	CGCG	1 cut(s)	462
AciI	CCGC	9 cut(s)	141, 148, 157, 221, 262, 387, 462, 482, 518
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	435
AfiI	CCNNNNNNNGG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	269
AgeI	ACCGGT	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	127, 468
AluBI	AGCT	3 cut(s)	43, 123, 277
AluI	AGCT	3 cut(s)	43, 123, 277
Alw26I	GTCTC	2 cut(s)	184, 536
AlwI	GGATC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	2 cut(s)	357, 499
ApeKI	GCWGC	3 cut(s)	101, 223, 258
AsiGI	ACCGGT	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	77
BaeI	ACNNNNGTAYC	2 cut(s)	417, 450
BanI	GGYRCC	3 cut(s)	62, 74, 473
BbsI	GAAGAC	1 cut(s)	397
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	113, 235, 270
BceAI	ACGGC	3 cut(s)	50, 76, 89
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BcoDI	GTCTC	2 cut(s)	184, 536
BfaI	CTAG	2 cut(s)	23, 303
BfmI	CTRYAG	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	6 cut(s)	102, 221, 224, 259, 262, 387
BlsI	GCNGC	6 cut(s)	103, 222, 225, 260, 263, 388
BmeT110I	CYCGRG	1 cut(s)	533
BmiI	GGNNCC	3 cut(s)	64, 76, 475
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	397
Bpu10I	CCTNAGC	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	2 cut(s)	417, 431
BseDI	CCNNGG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	2 cut(s)	133, 501
BseNI	ACTGG	2 cut(s)	417, 431
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	113, 235, 270
BseYI	CCCAGC	1 cut(s)	39
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	359, 501
BshNI	GGYRCC	3 cut(s)	62, 74, 473
BshTI	ACCGGT	1 cut(s)	476
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	3 cut(s)	360, 477, 502
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	184, 536
BsnI	GGCC	2 cut(s)	359, 501
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	153, 184, 523
BspACI	CCGC	9 cut(s)	141, 148, 157, 221, 262, 387, 462, 482, 518
BspANI	GGCC	2 cut(s)	359, 501
BspCNI	CTCAG	2 cut(s)	132, 502
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	3 cut(s)	64, 76, 475
BspMAI	CTGCAG	1 cut(s)	260
BspPI	GGATC	1 cut(s)	148
BspT107I	GGYRCC	3 cut(s)	62, 74, 473
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	417, 431
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	153, 184, 523
BssNAI	GTATAC	1 cut(s)	18
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	240
Bst1107I	GTATAC	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	355
BstACI	GRCGYC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	3 cut(s)	55, 119, 510
BstEII	GGTNACC	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	462
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	3 cut(s)	156, 187, 526
BstMAI	GTCTC	2 cut(s)	184, 536
BstMBI	GATC	3 cut(s)	153, 184, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 392, 488
BstNSI	RCATGY	1 cut(s)	273
BstPI	GGTNACC	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	77
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	3 cut(s)	113, 235, 270
BstV2I	GAAGAC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BstZ17I	GTATAC	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	359, 501
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	306, 533
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	476
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	1 cut(s)	434
CspAI	ACCGGT	1 cut(s)	476
CviAII	CATG	2 cut(s)	265, 270
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	3 cut(s)	55, 119, 510
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	3 cut(s)	155, 186, 525
DpnII	GATC	3 cut(s)	153, 184, 523
EaeI	YGGCCR	1 cut(s)	357
EciI	GGCGGA	2 cut(s)	130, 146
Eco130I	CCWWGG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	533
Eco91I	GGTNACC	1 cut(s)	368
EcoO65I	GGTNACC	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	240
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	2 cut(s)	268, 273
FaiI	YATR	6 cut(s)	18, 266, 271, 318, 344, 384
FatI	CATG	2 cut(s)	264, 269
FauI	CCCGC	1 cut(s)	525
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	6 cut(s)	102, 221, 224, 259, 262, 387
Fsp4HI	GCNGC	6 cut(s)	102, 221, 224, 259, 262, 387
FspBI	CTAG	2 cut(s)	23, 303
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	6 cut(s)	102, 221, 224, 259, 262, 387
GsaI	CCCAGC	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	359, 501
HapII	CCGG	3 cut(s)	360, 477, 502
HgaI	GACGC	1 cut(s)	468
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	268, 273
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	4 cut(s)	110, 209, 299, 536
HpaII	CCGG	3 cut(s)	360, 477, 502
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	3 cut(s)	184, 214, 232
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	5 cut(s)	10, 110, 209, 251, 462
HpyAV	CCTTC	4 cut(s)	97, 106, 124, 357
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 392, 488
HpyF3I	CTNAG	3 cut(s)	55, 119, 510
HpySE526I	ACGT	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	268, 273
HspAI	GCGC	1 cut(s)	63
KasI	GGCGCC	1 cut(s)	62
Kzo9I	GATC	3 cut(s)	153, 184, 523
LpnPI	CCDG	9 cut(s)	53, 230, 373, 430, 444, 490, 515, 525, 534
Lsp1109I	GCAGC	3 cut(s)	113, 235, 270
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	23, 303
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	3 cut(s)	335, 368, 398
MalI	GATC	3 cut(s)	155, 186, 525
MboI	GATC	3 cut(s)	153, 184, 523
MboII	GAAGA	1 cut(s)	397
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	77
Mly113I	GGCGCC	1 cut(s)	63
MlyI	GAGTC	2 cut(s)	203, 545
MmeI	TCCRAC	2 cut(s)	237, 449
MseI	TTAA	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	3 cut(s)	360, 477, 502
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	156, 392, 488
NarI	GGCGCC	1 cut(s)	63
NdeII	GATC	3 cut(s)	153, 184, 523
NlaIII	CATG	2 cut(s)	268, 273
NlaIV	GGNNCC	3 cut(s)	64, 76, 475
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	335, 368
NspI	RCATGY	1 cut(s)	273
PaeR7I	CTCGAG	1 cut(s)	533
PciI	ACATGT	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 210, 399
PfeI	GAWTC	2 cut(s)	110, 299
PinAI	ACCGGT	1 cut(s)	476
PkrI	GCNGC	6 cut(s)	103, 222, 225, 260, 263, 388
PleI	GAGTC	2 cut(s)	203, 544
PluTI	GGCGCC	1 cut(s)	66
PpsI	GAGTC	2 cut(s)	203, 544
PscI	ACATGT	1 cut(s)	269
PspEI	GGTNACC	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	64, 76, 475
PstI	CTGCAG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	153
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	6 cut(s)	102, 221, 224, 259, 262, 387
Sau3AI	GATC	3 cut(s)	153, 184, 523
SchI	GAGTC	2 cut(s)	203, 545
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	6 cut(s)	45, 125, 246, 279, 405, 544
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	256
SfoI	GGCGCC	1 cut(s)	64
Sfr274I	CTCGAG	1 cut(s)	533
SgrAI	CRCCGGYG	1 cut(s)	476
SlaI	CTCGAG	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
SsiI	CCGC	9 cut(s)	141, 148, 157, 221, 262, 387, 462, 482, 518
SspDI	GGCGCC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	23, 303
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	3 cut(s)	8, 108, 534
TauI	GCSGC	3 cut(s)	223, 264, 389
TfiI	GAWTC	2 cut(s)	110, 299
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	2 cut(s)	313, 533
TseFI	GTSAC	2 cut(s)	335, 368
TseI	GCWGC	3 cut(s)	101, 223, 258
Tsp45I	GTSAC	2 cut(s)	335, 368
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	313, 533
XceI	RCATGY	1 cut(s)	273
XhoI	CTCGAG	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	2 cut(s)	23, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.