Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002439

Physical Location & Seq

Genomic Coordinates Forward (+)

62523826 .. 62524416

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG435700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAGACGAACTCCGTCGTACGGACGCCACCGCAACTCCAGCTCCGATGCTCGGAGCAAGCCTGACCGCTACCCCTACTCGCCTACCCCCTCATCCTACTCCGACGCATCCATTGCACGCAAGTCCACCTCCGGCCAGACCACCTCCGCCCTCCGCAAGATCCGCCAAGCCCCCTCCGTCAAAGTCTCCGATCTCCGCTCCCTTATCCACGAAGACTCCGACCAACCGCAGCCGTCTGATGCCTCCAAGCTAGTCGTCCTCCGCGGCCGCGTCCAAGCCACACCCGACGCCGACGGAACCTATAAGAGCCTCAAGTCCAGCCCGATCATCAACCCCGATAATAACGAGAACACCACCATCGACGCCGTCATCGTTCAGAGGACGCAACGGGTGCGTTTAGCGTTTTTGATTTTCGTTCTTGCTAAGCAAGTTTCGGAGTCACAAATCCGAGTCACCGGCGCCGGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIDE zf-C3HC4_3

Protein Analysis

156

Amino Acids

17.17

Weight (kDa)

10.3

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54150 AT1G54150
fragaria_vesca	FvH4_6g34790
malus_domestica	MD02G1089500.v1.1 MD09G1182600.v1.1 MD09G1182700.v1.1 MD09G1182800.v1.1
prunus_persica	Prupe.3G040200_v2.0.a1
pyrus_communis	pycom02g07150 pycom09g09990 pycom09g10000 pycom09g10010 pycom09g10020 pycom10g20170 pycom10g20200
rosa_chinensis	RchiOBHm_Chr2g0145651
rosa_laevigata	RLG00000012894 RLG00000012896 RLG00000020156
rosa_multiflora	Rmu_co8485045.1_g000001 Rmu_sc0000227.1_g000002 Rmu_sc0003046.1_g000004 Rmu_sc0006544.1_g000002 Rmu_sc0009650.1_g000008 Rmu_sc0024073.1_g000001 Rmu_sc0027050.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434660 Rroxscaffold_2G00100580 Rroxscaffold_7G00191020
rosa_rugosa	Rorug02G0392400
rosa_samantha	Rh2AG197700 Rh2AG446800 Rh2BG416100 Rh2BG458500 Rh2CG433500 Rh2DG205400 Rh2DG468100 Rh4AG042900 Rh4CG045900 Rh6AG435700
rosa_wichuraiana	Rw2G036490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	458
AccBSI	CCGCTC	1 cut(s)	198
AccII	CGCG	2 cut(s)	264, 270
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	2 cut(s)	133, 265
AcyI	GRCGYC	4 cut(s)	25, 288, 363, 459
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	20, 51
AluBI	AGCT	2 cut(s)	42, 250
AluI	AGCT	2 cut(s)	42, 250
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	2 cut(s)	133, 265
ApeKI	GCWGC	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	2 cut(s)	217, 350
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	462
BisI	GCNGC	3 cut(s)	230, 265, 268
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	3 cut(s)	231, 266, 269
BmiI	GGNNCC	2 cut(s)	298, 460
BmsI	GCATC	3 cut(s)	37, 116, 229
BpiI	GAAGAC	1 cut(s)	219
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	22
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	296
BsaHI	GRCGYC	4 cut(s)	25, 288, 363, 459
BsaJI	CCNNGG	1 cut(s)	262
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 26, 50, 56, 200, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 51
Bse118I	RCCGGY	2 cut(s)	455, 461
Bse3DI	GCAATG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	2 cut(s)	92, 107
BseLI	CCNNNNNNNGG	2 cut(s)	20, 51
BseMI	GCAATG	1 cut(s)	111
BseX3I	CGGCCG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	241
Bsh1236I	CGCG	2 cut(s)	264, 270
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	135, 267
BshNI	GGYRCC	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	132, 456, 462
BsiWI	CGTACG	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	20, 51
BsmAI	GTCTC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	135, 267
Bsp143I	GATC	3 cut(s)	159, 190, 324
Bsp1720I	GCTNAGC	1 cut(s)	423
BspANI	GGCC	2 cut(s)	135, 267
BspFNI	CGCG	2 cut(s)	264, 270
BspLI	GGNNCC	2 cut(s)	298, 460
BspPI	GGATC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	111
BsrFI	RCCGGY	2 cut(s)	455, 461
BssAI	RCCGGY	2 cut(s)	455, 461
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	3 cut(s)	159, 190, 324
BssNI	GRCGYC	4 cut(s)	25, 288, 363, 459
BstACI	GRCGYC	4 cut(s)	25, 288, 363, 459
BstAPI	GCANNNNNTGC	2 cut(s)	113, 391
BstC8I	GCNNGC	3 cut(s)	59, 118, 463
BstDEI	CTNAG	1 cut(s)	423
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	2 cut(s)	92, 107
BstFNI	CGCG	2 cut(s)	264, 270
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	3 cut(s)	162, 193, 327
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	3 cut(s)	159, 190, 324
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 113, 162, 391
BstUI	CGCG	2 cut(s)	264, 270
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BstZI	CGGCCG	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	135, 267
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	92, 107
Cac8I	GCNNGC	3 cut(s)	59, 118, 463
CciNI	GCGGCCGC	1 cut(s)	265
CfoI	GCGC	1 cut(s)	461
Cfr10I	RCCGGY	2 cut(s)	455, 461
Cfr42I	CCGCGG	1 cut(s)	265
CseI	GACGC	6 cut(s)	33, 113, 259, 296, 371, 391
Csp6I	GTAC	1 cut(s)	19
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	423
DinI	GGCGCC	1 cut(s)	460
DpnI	GATC	3 cut(s)	161, 192, 326
DpnII	GATC	3 cut(s)	159, 190, 324
EaeI	YGGCCR	2 cut(s)	133, 265
EagI	CGGCCG	1 cut(s)	265
EciI	GGCGGA	2 cut(s)	136, 152
EclXI	CGGCCG	1 cut(s)	265
Eco52I	CGGCCG	1 cut(s)	265
EgeI	GGCGCC	1 cut(s)	460
EheI	GGCGCC	1 cut(s)	460
FaiI	YATR	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	230, 265, 268
FokI	GGATG	2 cut(s)	79, 94
Fsp4HI	GCNGC	3 cut(s)	230, 265, 268
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	3 cut(s)	230, 265, 268
GsuI	CTGGAG	1 cut(s)	22
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	135, 267
HapII	CCGG	3 cut(s)	132, 456, 462
HgaI	GACGC	6 cut(s)	33, 113, 259, 296, 371, 391
HhaI	GCGC	1 cut(s)	461
Hin1I	GRCGYC	4 cut(s)	25, 288, 363, 459
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HinfI	GANTC	3 cut(s)	215, 437, 450
HpaII	CCGG	3 cut(s)	132, 456, 462
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	9 cut(s)	46, 54, 103, 190, 220, 238, 378, 436, 449
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	5 cut(s)	19, 107, 290, 296, 365
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 113, 162, 391
HpyF3I	CTNAG	1 cut(s)	423
Hsp92I	GRCGYC	4 cut(s)	25, 288, 363, 459
HspAI	GCGC	1 cut(s)	459
KasI	GGCGCC	1 cut(s)	458
KroI	GCCGGC	1 cut(s)	461
KroNI	GCCGGC	1 cut(s)	463
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	159, 190, 324
LmnI	GCTCC	3 cut(s)	47, 54, 203
LpnPI	CCDG	5 cut(s)	52, 75, 145, 149, 331
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	3 cut(s)	37, 116, 229
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	2 cut(s)	438, 451
MalI	GATC	3 cut(s)	161, 192, 326
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	3 cut(s)	159, 190, 324
MboII	GAAGA	1 cut(s)	224
MflI	RGATCY	1 cut(s)	159
Mly113I	GGCGCC	1 cut(s)	459
MlyI	GAGTC	3 cut(s)	209, 446, 459
MmeI	TCCRAC	2 cut(s)	126, 243
MnlI	CCTC	9 cut(s)	100, 139, 154, 161, 184, 253, 269, 320, 372
MroNI	GCCGGC	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	3 cut(s)	132, 456, 462
MvnI	CGCG	2 cut(s)	264, 270
MwoI	GCNNNNNNNGC	4 cut(s)	39, 113, 162, 391
NaeI	GCCGGC	1 cut(s)	463
NarI	GGCGCC	1 cut(s)	459
NdeII	GATC	3 cut(s)	159, 190, 324
NgoMIV	GCCGGC	1 cut(s)	461
NlaIV	GGNNCC	2 cut(s)	298, 460
NmuCI	GTSAC	2 cut(s)	438, 451
NotI	GCGGCCGC	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 369
PdiI	GCCGGC	1 cut(s)	463
Pfl23II	CGTACG	1 cut(s)	18
PflFI	GACNNNGTC	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	231, 266, 269
PleI	GAGTC	3 cut(s)	209, 445, 458
PluTI	GGCGCC	1 cut(s)	462
PpsI	GAGTC	3 cut(s)	209, 445, 458
PspLI	CGTACG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	298, 460
PsuI	RGATCY	1 cut(s)	159
PsyI	GACNNNGTC	1 cut(s)	365
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SacII	CCGCGG	1 cut(s)	265
SatI	GCNGC	3 cut(s)	230, 265, 268
Sau3AI	GATC	3 cut(s)	159, 190, 324
SchI	GAGTC	3 cut(s)	209, 446, 459
SetI	ASST	5 cut(s)	44, 131, 146, 252, 302
SfaNI	GCATC	3 cut(s)	37, 116, 229
SfoI	GGCGCC	1 cut(s)	460
Sfr303I	CCGCGG	1 cut(s)	265
SgrAI	CRCCGGYG	1 cut(s)	455
SgrBI	CCGCGG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SspDI	GGCGCC	1 cut(s)	458
SspMI	CTAG	1 cut(s)	251
TaqI	TCGA	1 cut(s)	360
TauI	GCSGC	2 cut(s)	267, 270
TseFI	GTSAC	2 cut(s)	438, 451
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	2 cut(s)	438, 451
TspGWI	ACGGA	3 cut(s)	36, 166, 309
Tth111I	GACNNNGTC	1 cut(s)	365
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.