Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004551

Physical Location & Seq

Genomic Coordinates Reverse (-)

501453 .. 502601

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1005500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCTGCTGCCAATTCATCTAAATCACAGACTGGTGTTTACTGTTTCTCTGAAGGTCATGGAAGTGCTGATGGCTTTGCAAGGATCTCACATGGAGACGGATGATCCAACTACAAGTTACATGTTACAAGCCTGGGCTAGACTCTGCAAGTGCCTAGGACAAGATTTCCTCCCACACATGAGTGTGCTAATGCCTCCTTTGCTTCAATCTGCTCAACTTAAGCCAGATGTTACTATCACATCTGCAGATGACGAAAATGATATTGATGACTCTGATGATGATAGTATGGAAACAATTACTCTTGGGGATAAAAGGATTGGAATCAAGATTAGTGTCTTGGAGGAAAAAGCTACAGCTTGCAATATGCTGTGTTGCTATGCTGATGGGCTGAAAGAAGGATTCTTTCCCTGGATTGATCAGGTTGCCCCAACTTTGGTTCCACTTCTTAAGTTTTATTTCCATGAAGAAGTTAGGAAGGCAGCTGTTTCAGCAATGACGGAGCTACTGAGTACTGGATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

174

Amino Acids

19.36

Weight (kDa)

4.63

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004551)

Species	Orthologous Gene IDs
malus_domestica	MD11G1005500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0054081 RchiOBHm_Chr5g0054171 RchiOBHm_Chr5g0054201 RchiOBHm_Chr5g0054251
rosa_laevigata	RLG00000034915 RLG00000034916 RLG00000034918 RLG00000034920 RLG00000034921
rosa_multiflora	Rmu_sc0000094.1_g000006 Rmu_sc0000509.1_g000025 Rmu_sc0006889.1_g000007 Rmu_sc0010082.1_g000001 Rmu_sc0023670.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026650 Rroxscaffold_1G00026670
rosa_rugosa	Rorug05G0285300
rosa_samantha	Rh5AG354200 Rh5AG354300 Rh5AG354700 Rh5AG355200 Rh5BG366000 Rh5BG366100 Rh5BG367300 Rh5CG390800 Rh5DG055000 Rh5DG380900 Rh5DG381500
rosa_wichuraiana	Rw5G033390 Rw5G033410 Rw5G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	91, 98
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	1 cut(s)	433
AflII	CTTAAG	2 cut(s)	218, 446
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	2 cut(s)	131, 407
AleI	CACNNNNGTG	1 cut(s)	180
AluBI	AGCT	4 cut(s)	350, 356, 482, 502
AluI	AGCT	4 cut(s)	350, 356, 482, 502
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	91, 98
ApeKI	GCWGC	3 cut(s)	4, 7, 479
AspA2I	CCTAGG	1 cut(s)	154
AvrII	CCTAGG	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	2 cut(s)	64, 377
BciT130I	CCWGG	2 cut(s)	133, 409
BciVI	GTATCC	1 cut(s)	509
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	138, 155
BfmI	CTRYAG	2 cut(s)	243, 351
BfrI	CTTAAG	2 cut(s)	218, 446
BfuI	GTATCC	1 cut(s)	509
BisI	GCNGC	3 cut(s)	5, 8, 480
BlnI	CCTAGG	1 cut(s)	154
BlsI	GCNGC	3 cut(s)	6, 9, 481
BmcAI	AGTACT	1 cut(s)	511
Bme1390I	CCNGG	2 cut(s)	133, 409
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	2 cut(s)	133, 409
BsaBI	GATNNNNATC	1 cut(s)	320
BsaJI	CCNNGG	3 cut(s)	132, 154, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	36, 517
Bse3DI	GCAATG	1 cut(s)	498
Bse8I	GATNNNNATC	1 cut(s)	320
BseBI	CCWGG	2 cut(s)	133, 409
BseDI	CCNNGG	3 cut(s)	132, 154, 407
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	2 cut(s)	36, 517
BseXI	GCAGC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
Bsp143I	GATC	3 cut(s)	83, 103, 415
BspCNI	CTCAG	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	438
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	2 cut(s)	91, 98
BspTI	CTTAAG	2 cut(s)	218, 446
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	36, 517
BssECI	CCNNGG	3 cut(s)	132, 154, 407
BssMI	GATC	3 cut(s)	83, 103, 415
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	2 cut(s)	133, 409
Bst4CI	ACNGT	1 cut(s)	43
BstAFI	CTTAAG	2 cut(s)	218, 446
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	3 cut(s)	86, 106, 418
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	83, 103, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 488
BstNI	CCWGG	2 cut(s)	133, 409
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	131, 407
BstSFI	CTRYAG	2 cut(s)	243, 351
BstV1I	GCAGC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	509
BtsCI	GGATG	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	510
CviAII	CATG	5 cut(s)	58, 91, 121, 178, 461
CviJI	RGCY	9 cut(s)	74, 131, 137, 223, 350, 356, 388, 482, 502
CviKI_1	RGCY	9 cut(s)	74, 131, 137, 223, 350, 356, 388, 482, 502
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	3 cut(s)	85, 105, 417
DpnII	GATC	3 cut(s)	83, 103, 415
Eco130I	CCWWGG	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	131, 407
EcoT14I	CCWWGG	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	5 cut(s)	61, 94, 124, 181, 464
FaiI	YATR	8 cut(s)	59, 92, 122, 179, 287, 365, 378, 462
FatI	CATG	5 cut(s)	57, 90, 120, 177, 460
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	5, 8, 480
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	3 cut(s)	5, 8, 480
FspBI	CTAG	2 cut(s)	138, 155
GluI	GCNGC	3 cut(s)	5, 8, 480
Hin1II	CATG	5 cut(s)	61, 94, 124, 181, 464
HinfI	GANTC	4 cut(s)	141, 269, 321, 399
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	2 cut(s)	51, 274
Hpy188III	TCNNGA	1 cut(s)	325
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	3 cut(s)	46, 389, 469
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	79, 147, 245, 360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 488
HpyF3I	CTNAG	1 cut(s)	506
Hsp92II	CATG	5 cut(s)	61, 94, 124, 181, 464
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	83, 103, 415
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	8 cut(s)	17, 118, 145, 237, 394, 404, 421, 498
Lsp1109I	GCAGC	1 cut(s)	491
MaeI	CTAG	2 cut(s)	138, 155
MaeIII	GTNAC	3 cut(s)	116, 123, 229
MalI	GATC	3 cut(s)	85, 105, 417
MboI	GATC	3 cut(s)	83, 103, 415
MboII	GAAGA	1 cut(s)	476
MflI	RGATCY	1 cut(s)	83
MluCI	AATT	2 cut(s)	12, 294
MlyI	GAGTC	2 cut(s)	135, 263
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	3 cut(s)	179, 204, 334
MseI	TTAA	2 cut(s)	219, 447
MslI	CAYNNNNRTG	3 cut(s)	62, 180, 182
MspA1I	CMGCKG	1 cut(s)	482
MspCI	CTTAAG	2 cut(s)	218, 446
MspR9I	CCNGG	2 cut(s)	133, 409
MvaI	CCWGG	2 cut(s)	133, 409
MwoI	GCNNNNNNNGC	2 cut(s)	199, 488
NdeII	GATC	3 cut(s)	83, 103, 415
NlaIII	CATG	5 cut(s)	61, 94, 124, 181, 464
NlaIV	GGNNCC	1 cut(s)	438
NspI	RCATGY	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	180
PciI	ACATGT	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	321, 399
PkrI	GCNGC	3 cut(s)	6, 9, 481
PleI	GAGTC	2 cut(s)	135, 263
PpsI	GAGTC	2 cut(s)	135, 263
PscI	ACATGT	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	131, 407
PspGI	CCWGG	2 cut(s)	131, 407
PspN4I	GGNNCC	1 cut(s)	438
PstI	CTGCAG	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
RseI	CAYNNNNRTG	3 cut(s)	62, 180, 182
SaqAI	TTAA	2 cut(s)	219, 447
SatI	GCNGC	3 cut(s)	5, 8, 480
Sau3AI	GATC	3 cut(s)	83, 103, 415
ScaI	AGTACT	1 cut(s)	511
SchI	GAGTC	2 cut(s)	135, 263
ScrFI	CCNGG	2 cut(s)	133, 409
SetI	ASST	6 cut(s)	57, 352, 358, 423, 484, 504
SfcI	CTRYAG	2 cut(s)	243, 351
SmiMI	CAYNNNNRTG	3 cut(s)	62, 180, 182
SmlI	CTYRAG	2 cut(s)	218, 446
SmoI	CTYRAG	2 cut(s)	218, 446
Sse9I	AATT	2 cut(s)	12, 294
SspMI	CTAG	2 cut(s)	138, 155
StyD4I	CCNGG	2 cut(s)	131, 407
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	43
TasI	AATT	2 cut(s)	12, 294
TatI	WGTACW	1 cut(s)	509
TfiI	GAWTC	2 cut(s)	321, 399
Tru1I	TTAA	2 cut(s)	219, 447
Tru9I	TTAA	2 cut(s)	219, 447
TseI	GCWGC	3 cut(s)	4, 7, 479
TspDTI	ATGAA	2 cut(s)	5, 477
TspGWI	ACGGA	2 cut(s)	113, 512
Vha464I	CTTAAG	2 cut(s)	218, 446
XceI	RCATGY	1 cut(s)	124
XmaJI	CCTAGG	1 cut(s)	154
XspI	CTAG	2 cut(s)	138, 155
ZrmI	AGTACT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.