Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004551

Physical Location & Seq

Genomic Coordinates Forward (+)

57411673 .. 57417274

Gene Structure 5602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG366000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2325 bp

ATGGCCGAGTCGACTCAGCTCCAGCTTCAACTTGAGCAAGTCGCGACGATTCTTGGCCCCGACCCGCTCGCCTCTTTCAAAACCCTAATCTCCTACCTCCTCTGCCCCTCCTATTTTGAAAGCCTAATCTCCTCCTCCCTCTTCTCCTCCAATTCCGAGCAGCGATCCCGGGCCGAGCTCGTCTATAACCTCTGCAAAAAGTACGATCCCGACTCCCTCTCCCTCACACTCGCTCACCTCCTCCAATTCTCGCCGGCGCCGGACTCCCGATTTATCTCCGCCGTCCTCCTCCGCAATCAAATCCGCCTCTGGCCAAGCCTCTCGGAGAACACACAATCCACGATCAAATCCGCTCTATTGTTCTCCATTCAACGACAGGACAACACGAAATCGATTTCAGGCAGCCTCTGCGACGCCGTTTCCTCGCTCGCCGCCGGGATCTTGCCGGAAAACGGCTGGCCGGAGCTCTTGCCCTTTCTGTTCGCATCCGTTTCCGCGGATTCGCTGCCGCCGATACTTCAGGAATCGGCAGCGTTCTTGATATTCGCGCAGCTCTCGCCGCACTTATTGCAGTATATAAACGAATTGCGCGCAGTCTTCTTGTCCTGCTTGAGCTCCTCCACAAGGTCAAACGAAGTTAAGATAGCCGCGTTTAGTGCGGTGGTCAGTTTCATTCGGTGTTTGCCCAGCTCTGAAGATCCGGATATGTTTCACGACGTCTTGATAGAAATGATGAGAACCGTGATGGGGGAATTGAACAAAAAGAACGAGGCCACGGCGCAGGAGGCGATCAAGTTGTTCATTGAATTGGCCGGGACCCATCCGACGTTGCTCAGCCGCAACGGGCAGATCATCCGGGCTATGCTGCAGATTGCTGAAGCCATAGATGTCTTGGAACAAGGGACAAGGCACTTGGCCATTGAGTTTCTGATTACTCTGGCCGAGGCCGGAGAGCGTGCACCATGGATAATGAGGAATTCAGTGCAGTTTGTTGGTCTGTTGTTTTCCATTTTGATGAGGATGGTTTCGGATGTTGAGGATGATCCCTTGTGGCATAACGCTGAGACTGATGATGAGTATGCGGGTGTAAGTGCTGATTACCGTGTTGGGAATGAGTGTTTGCATAGGCTTGCCATTGCGTTGGGCGGCAATGACATTGTTCCTGTTGCGTTGAAGGAGTTACCTGCCTGTTTTGCTTCCAATGAGTGGAAGAAGCACAATGCTGCACTGGTTGCCCTTGCTCAAATTTCTGAGGGTTGTTCAAAGGCACATGCTGCTTCAGCACTGCAAAAATTCATTGAGAAATGTGCTAGGGATATCTTGACACCTTATTTGGATGAAGTGTTTTCCCAATTGGTTGTACTTTTGCAGAGTGAGATACAAATGGTGCAAGTTGAAGCATTGACTGCTTTGGCATCAGTTGTTGTTTCATTTCCGGAGCAATTCCAAAAATACTATGAAGTTGTCATGATTCCCCTGAGAGCTATGTTGTTGGATGCCGCTAATAACCCAGTTTGGTCCAAGTCCGTGGCGTGTATTTGCTTGGTTGGTATGGCTGTTGGAAAGGAGAAATTCAGGGATGATGCTAAGAAAGTCATGGAAGTGCTGCTGTCTTTTCAAGGATCTCAAATGGAGCCAGATGATCCAACTGCAAGTTGCATGCTACAGATATGCGCTGACCTCTGCAAGTGTCTAGGACAAGATTTCCTTCCTTACATGGGTGCTGTTATGCCTCCTTTGCTTCAGTTTGTTCAAATTAAGCCTGTTGAAACCGTTACCTCCGCAAATGACAATAGTGATATGGATGAATCTGATGATGAAAGTATGGAAACAATTACTCTTGGAGATAAAAGGATTAGAATCAAGACTAGTGCATTGGAGGAAAAAGTTACATCTTGCAATTTGCTGTGTTGCTATGCTGATGAACTGAAGGAAGGATTCTTTCCATGGATCGATCAGGTTGCCCCAACGTTAGTTCCACTTATATCTTATATCCATGAAAAAGTGAGGAAGTCTGCTGTTTCAGCAATGCTGAAGCTACTGCTTACTGCAAAGTTAGCTGTAGACAGAGGGCAAGCTCAAGGTTGTAATGAAACGTATTTAAAGCAATTGTCTGACTACATCGTTCGGGCTCTGGTGGAAGCATTACCTAAGGAAGATGATTCTGAAATCTGCACAAAGATATTGGATGCTATAAATGAATGCATACAGCTCTTTGGATCCACTCTAGATGAAAGCCTTGTCAAATCCATCAAGGAGATAAAGCAGGTGATTACTTCTCGTTCTAGTAAGAAAAGAGAGAGCAGAAAGGACCTAAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

774

Amino Acids

85.6

Weight (kDa)

4.92

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO5	PF25780	132 - 280	2.5e-17	IPO5-like, TPR repeats
Importin_rep_4	PF18808	298 - 388	1.4e-14	Importin repeat
TPR_IMB1	PF25574	426 - 588	8.4e-08	Importin subunit beta-1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004551)

Species	Orthologous Gene IDs
malus_domestica	MD11G1005500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0054081 RchiOBHm_Chr5g0054171 RchiOBHm_Chr5g0054201 RchiOBHm_Chr5g0054251
rosa_laevigata	RLG00000034915 RLG00000034916 RLG00000034918 RLG00000034920 RLG00000034921
rosa_multiflora	Rmu_sc0000094.1_g000006 Rmu_sc0000509.1_g000025 Rmu_sc0006889.1_g000007 Rmu_sc0010082.1_g000001 Rmu_sc0023670.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026650 Rroxscaffold_1G00026670
rosa_rugosa	Rorug05G0285300
rosa_samantha	Rh5AG354200 Rh5AG354300 Rh5AG354700 Rh5AG355200 Rh5BG366000 Rh5BG366100 Rh5BG367300 Rh5CG390800 Rh5DG055000 Rh5DG380900 Rh5DG381500
rosa_wichuraiana	Rw5G033390 Rw5G033410 Rw5G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2257
AatII	GACGTC	1 cut(s)	720
Acc36I	ACCTGC	2 cut(s)	1192, 2257
AccB1I	GGYRCC	1 cut(s)	256
AccB7I	CCANNNNNTGG	1 cut(s)	1206
AccBSI	CCGCTC	2 cut(s)	67, 353
AccI	GTMKAC	2 cut(s)	11, 2064
AccII	CGCG	5 cut(s)	44, 497, 548, 591, 650
AccIII	TCCGGA	2 cut(s)	700, 1435
AclI	AACGTT	1 cut(s)	1970
AcoI	YGGCCR	6 cut(s)	3, 311, 458, 810, 915, 939
AcsI	RAATTY	4 cut(s)	976, 1245, 1292, 1571
AcuI	CTGAAG	7 cut(s)	503, 714, 897, 1263, 1727, 1949, 2054
AcyI	GRCGYC	3 cut(s)	257, 414, 717
AfaI	GTAC	2 cut(s)	203, 1362
AfiI	CCNNNNNNNGG	5 cut(s)	452, 624, 747, 1206, 1718
AhlI	ACTAGT	1 cut(s)	1868
AloI	GAACNNNNNNTCC	2 cut(s)	320, 352
Alw21I	GWGCWC	4 cut(s)	180, 468, 617, 961
Alw26I	GTCTC	1 cut(s)	1058
Alw44I	GTGCAC	1 cut(s)	957
AlwNI	CAGNNNCTG	1 cut(s)	408
Ama87I	CYCGRG	1 cut(s)	168
Aor13HI	TCCGGA	2 cut(s)	700, 1435
ApaLI	GTGCAC	1 cut(s)	957
ApeKI	GCWGC	9 cut(s)	160, 402, 505, 530, 550, 865, 1223, 1274, 1606
ApoI	RAATTY	4 cut(s)	976, 1245, 1292, 1571
ArsI	GACNNNNNNTTYG	2 cut(s)	1315, 1347
AspLEI	GCGC	6 cut(s)	259, 550, 591, 593, 781, 1676
AspS9I	GGNCC	5 cut(s)	56, 171, 816, 1518, 2311
AsuC2I	CCSGG	5 cut(s)	169, 170, 436, 814, 857
AsuHPI	GGTGA	2 cut(s)	227, 2281
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	3 cut(s)	816, 1518, 2311
AxyI	CCTNAGG	1 cut(s)	2151
BaeGI	GKGCMC	1 cut(s)	961
BalI	TGGCCA	2 cut(s)	313, 917
BamHI	GGATCC	1 cut(s)	2219
BanI	GGYRCC	1 cut(s)	256
BanII	GRGCYC	4 cut(s)	180, 468, 617, 2134
BbsI	GAAGAC	1 cut(s)	589
Bbv12I	GWGCWC	4 cut(s)	180, 468, 617, 961
BbvI	GCAGC	9 cut(s)	172, 414, 492, 542, 562, 852, 1210, 1261, 1593
BccI	CCATC	4 cut(s)	739, 828, 1015, 2258
BceAI	ACGGC	4 cut(s)	266, 401, 469, 792
BcgI	CGANNNNNNTGC	2 cut(s)	1943, 1977
BcnI	CCSGG	5 cut(s)	169, 170, 436, 814, 857
BcoDI	GTCTC	1 cut(s)	1058
BcuI	ACTAGT	1 cut(s)	1868
BfaI	CTAG	5 cut(s)	1311, 1694, 1869, 2228, 2286
BfmI	CTRYAG	3 cut(s)	866, 1664, 2061
BfoI	RGCGCY	1 cut(s)	260
BfuAI	ACCTGC	2 cut(s)	1192, 2257
BlpI	GCTNAGC	1 cut(s)	833
Bme1390I	CCNGG	5 cut(s)	169, 170, 436, 814, 857
Bme18I	GGWCC	3 cut(s)	816, 1518, 2311
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	5 cut(s)	56, 171, 816, 1518, 2311
BmiI	GGNNCC	6 cut(s)	58, 258, 817, 818, 1635, 2221
BmrFI	CCNGG	5 cut(s)	169, 170, 436, 814, 857
BmrI	ACTGGG	1 cut(s)	1505
BmsI	GCATC	5 cut(s)	494, 1424, 1486, 1573, 2179
BmuI	ACTGGG	1 cut(s)	1505
BpiI	GAAGAC	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	5
Bpu10I	CCTNAGC	1 cut(s)	2315
Bpu1102I	GCTNAGC	1 cut(s)	833
BpuEI	CTTGAG	3 cut(s)	53, 631, 2064
BpuMI	CCSGG	5 cut(s)	169, 170, 436, 814, 857
Bsa29I	ATCGAT	2 cut(s)	392, 1953
BsaBI	GATNNNNATC	1 cut(s)	1859
BsaHI	GRCGYC	3 cut(s)	257, 414, 717
BsaJI	CCNNGG	7 cut(s)	168, 495, 774, 942, 962, 1527, 1946
BsaWI	WCCGGW	2 cut(s)	700, 1435
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	5 cut(s)	452, 624, 747, 1206, 1718
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	1233, 1511
Bse21I	CCTNAGG	1 cut(s)	2151
Bse3DI	GCAATG	3 cut(s)	1134, 1156, 2034
Bse8I	GATNNNNATC	1 cut(s)	1859
BseAI	TCCGGA	2 cut(s)	700, 1435
BseCI	ATCGAT	2 cut(s)	392, 1953
BseDI	CCNNGG	7 cut(s)	168, 495, 774, 942, 962, 1527, 1946
BseJI	GATNNNNATC	1 cut(s)	1859
BseLI	CCNNNNNNNGG	5 cut(s)	452, 624, 747, 1206, 1718
BseMI	GCAATG	3 cut(s)	1134, 1156, 2034
BseMII	CTCAG	5 cut(s)	29, 847, 1053, 1242, 1469
BseNI	ACTGG	2 cut(s)	1233, 1511
BsePI	GCGCGC	1 cut(s)	589
BseRI	GAGGAG	7 cut(s)	89, 121, 124, 136, 230, 278, 607
BseSI	GKGCMC	1 cut(s)	961
BseXI	GCAGC	9 cut(s)	172, 414, 492, 542, 562, 852, 1210, 1261, 1593
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	3 cut(s)	1004, 1209, 2158
Bsh1236I	CGCG	5 cut(s)	44, 497, 548, 591, 650
BshNI	GGYRCC	1 cut(s)	256
BshVI	ATCGAT	2 cut(s)	392, 1953
BsiHKAI	GWGCWC	4 cut(s)	180, 468, 617, 961
BsiHKCI	CYCGRG	1 cut(s)	168
BslFI	GGGAC	2 cut(s)	829, 916
BslI	CCNNNNNNNGG	5 cut(s)	452, 624, 747, 1206, 1718
BsmAI	GTCTC	1 cut(s)	1058
BsmFI	GGGAC	2 cut(s)	829, 916
BsmI	GAATGC	1 cut(s)	2207
BsoBI	CYCGRG	1 cut(s)	168
Bsp1286I	GDGCHC	5 cut(s)	180, 468, 617, 961, 2134
Bsp13I	TCCGGA	2 cut(s)	700, 1435
Bsp1720I	GCTNAGC	1 cut(s)	833
Bsp19I	CCATGG	2 cut(s)	962, 1946
Bsp68I	TCGCGA	1 cut(s)	44
BspCNI	CTCAG	5 cut(s)	28, 846, 1054, 1243, 1470
BspDI	ATCGAT	2 cut(s)	392, 1953
BspEI	TCCGGA	2 cut(s)	700, 1435
BspFNI	CGCG	5 cut(s)	44, 497, 548, 591, 650
BspHI	TCATGA	1 cut(s)	1467
BspLI	GGNNCC	6 cut(s)	58, 258, 817, 818, 1635, 2221
BspMAI	CTGCAG	1 cut(s)	870
BspMI	ACCTGC	2 cut(s)	1192, 2257
BspT107I	GGYRCC	1 cut(s)	256
BsrBI	CCGCTC	2 cut(s)	67, 353
BsrDI	GCAATG	3 cut(s)	1134, 1156, 2034
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	2 cut(s)	1233, 1511
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	7 cut(s)	168, 495, 774, 942, 962, 1527, 1946
BssHII	GCGCGC	1 cut(s)	589
BssNI	GRCGYC	3 cut(s)	257, 414, 717
BssT1I	CCWWGG	2 cut(s)	962, 1946
Bst4CI	ACNGT	3 cut(s)	742, 1103, 1774
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	3 cut(s)	257, 414, 717
BstAPI	GCANNNNNTGC	5 cut(s)	408, 568, 1232, 1274, 1406
BstC8I	GCNNGC	9 cut(s)	69, 255, 429, 458, 591, 957, 1131, 1661, 2076
BstDEI	CTNAG	8 cut(s)	15, 833, 1062, 1251, 1478, 1587, 2151, 2315
BstDSI	CCRYGG	5 cut(s)	495, 774, 962, 1527, 1946
BstENI	CCTNNNNNAGG	1 cut(s)	622
BstFNI	CGCG	5 cut(s)	44, 497, 548, 591, 650
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	6 cut(s)	259, 550, 591, 593, 781, 1676
BstMAI	GTCTC	1 cut(s)	1058
BstNSI	RCATGY	2 cut(s)	1274, 1663
BstSCI	CCNGG	5 cut(s)	167, 168, 434, 812, 855
BstSFI	CTRYAG	3 cut(s)	866, 1664, 2061
BstSLI	GKGCMC	1 cut(s)	961
BstUI	CGCG	5 cut(s)	44, 497, 548, 591, 650
BstV1I	GCAGC	9 cut(s)	172, 414, 492, 542, 562, 852, 1210, 1261, 1593
BstV2I	GAAGAC	1 cut(s)	589
BstX2I	RGATCY	4 cut(s)	438, 697, 1622, 2219
BstXI	CCANNNNNNTGG	2 cut(s)	1141, 1528
BstYI	RGATCY	4 cut(s)	438, 697, 1622, 2219
Bsu15I	ATCGAT	2 cut(s)	392, 1953
Bsu36I	CCTNAGG	1 cut(s)	2151
BsuTUI	ATCGAT	2 cut(s)	392, 1953
BtgI	CCRYGG	5 cut(s)	495, 774, 962, 1527, 1946
BtsI	GCAGTG	1 cut(s)	1283
BtsIMutI	CAGTG	3 cut(s)	987, 1226, 1283
BtuMI	TCGCGA	1 cut(s)	44
BveI	ACCTGC	2 cut(s)	1192, 2257
Cac8I	GCNNGC	9 cut(s)	69, 255, 429, 458, 591, 957, 1131, 1661, 2076
CaiI	CAGNNNCTG	1 cut(s)	408
CciI	TCATGA	1 cut(s)	1467
CfoI	GCGC	6 cut(s)	259, 550, 591, 593, 781, 1676
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	5 cut(s)	56, 171, 816, 1518, 2311
Cfr42I	CCGCGG	1 cut(s)	498
Cfr9I	CCCGGG	1 cut(s)	168
ClaI	ATCGAT	2 cut(s)	392, 1953
CseI	GACGC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	202, 1361
CviAII	CATG	8 cut(s)	963, 1271, 1468, 1597, 1660, 1717, 1947, 1997
CviQI	GTAC	2 cut(s)	202, 1361
DdeI	CTNAG	8 cut(s)	15, 833, 1062, 1251, 1478, 1587, 2151, 2315
DinI	GGCGCC	1 cut(s)	258
DraI	TTTAAA	1 cut(s)	2103
EaeI	YGGCCR	6 cut(s)	3, 311, 458, 810, 915, 939
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	2 cut(s)	268, 293
Ecl136II	GAGCTC	3 cut(s)	178, 466, 615
Eco130I	CCWWGG	2 cut(s)	962, 1946
Eco24I	GRGCYC	4 cut(s)	180, 468, 617, 2134
Eco32I	GATATC	1 cut(s)	1318
Eco47I	GGWCC	3 cut(s)	816, 1518, 2311
Eco53kI	GAGCTC	3 cut(s)	178, 466, 615
Eco57I	CTGAAG	7 cut(s)	503, 714, 897, 1263, 1727, 1949, 2054
Eco81I	CCTNAGG	1 cut(s)	2151
Eco88I	CYCGRG	1 cut(s)	168
EcoICRI	GAGCTC	3 cut(s)	178, 466, 615
EcoNI	CCTNNNNNAGG	1 cut(s)	622
EcoO109I	RGGNCCY	2 cut(s)	816, 2311
EcoRI	GAATTC	1 cut(s)	976
EcoRV	GATATC	1 cut(s)	1318
EcoT14I	CCWWGG	2 cut(s)	962, 1946
EcoT22I	ATGCAT	1 cut(s)	2207
EcoT38I	GRGCYC	4 cut(s)	180, 468, 617, 2134
EgeI	GGCGCC	1 cut(s)	258
EheI	GGCGCC	1 cut(s)	258
ErhI	CCWWGG	2 cut(s)	962, 1946
FaeI	CATG	8 cut(s)	966, 1274, 1471, 1600, 1663, 1720, 1950, 2000
FalI	AAGNNNNNCTT	2 cut(s)	1692, 1724
FaqI	GGGAC	2 cut(s)	829, 916
FatI	CATG	8 cut(s)	962, 1270, 1467, 1596, 1659, 1716, 1946, 1996
FauI	CCCGC	2 cut(s)	72, 1075
FauNDI	CATATG	1 cut(s)	2321
FblI	GTMKAC	2 cut(s)	11, 2064
FriOI	GRGCYC	4 cut(s)	180, 468, 617, 2134
FspBI	CTAG	5 cut(s)	1311, 1694, 1869, 2228, 2286
GlaI	GCGC	6 cut(s)	258, 549, 590, 592, 780, 1675
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	1 cut(s)	5
HaeII	RGCGCY	1 cut(s)	260
HgaI	GACGC	1 cut(s)	422
HhaI	GCGC	6 cut(s)	259, 550, 591, 593, 781, 1676
Hin1I	GRCGYC	3 cut(s)	257, 414, 717
Hin1II	CATG	8 cut(s)	966, 1274, 1471, 1600, 1663, 1720, 1950, 2000
Hin6I	GCGC	6 cut(s)	257, 548, 589, 591, 779, 1674
HinP1I	GCGC	6 cut(s)	257, 548, 589, 591, 779, 1674
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HphI	GGTGA	2 cut(s)	227, 2281
Hpy166II	GTNNAC	3 cut(s)	12, 959, 2065
Hpy8I	GTNNAC	3 cut(s)	12, 959, 2065
Hpy99I	CGWCG	4 cut(s)	49, 416, 719, 829
HpyAV	CCTTC	4 cut(s)	1168, 1718, 1924, 1928
HpyCH4III	ACNGT	3 cut(s)	742, 1103, 1774
HpyCH4IV	ACGT	4 cut(s)	717, 827, 1970, 2096
HpyF3I	CTNAG	8 cut(s)	15, 833, 1062, 1251, 1478, 1587, 2151, 2315
HpySE526I	ACGT	4 cut(s)	717, 827, 1970, 2096
Hsp92I	GRCGYC	3 cut(s)	257, 414, 717
Hsp92II	CATG	8 cut(s)	966, 1274, 1471, 1600, 1663, 1720, 1950, 2000
HspAI	GCGC	6 cut(s)	257, 548, 589, 591, 779, 1674
KasI	GGCGCC	1 cut(s)	256
KflI	GGGWCCC	1 cut(s)	816
Kpn2I	TCCGGA	2 cut(s)	700, 1435
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
KspI	CCGCGG	1 cut(s)	498
LmnI	GCTCC	5 cut(s)	24, 463, 620, 1438, 1633
Lsp1109I	GCAGC	9 cut(s)	172, 414, 492, 542, 562, 852, 1210, 1261, 1593
LweI	GCATC	5 cut(s)	494, 1424, 1486, 1573, 2179
MaeI	CTAG	5 cut(s)	1311, 1694, 1869, 2228, 2286
MaeII	ACGT	4 cut(s)	717, 827, 1970, 2096
MaeIII	GTNAC	3 cut(s)	1179, 1774, 1888
MbiI	CCGCTC	2 cut(s)	67, 353
MboII	GAAGA	5 cut(s)	133, 589, 707, 1222, 2168
MfeI	CAATTG	2 cut(s)	1352, 2108
MflI	RGATCY	4 cut(s)	438, 697, 1622, 2219
MhlI	GDGCHC	5 cut(s)	180, 468, 617, 961, 2134
MlsI	TGGCCA	2 cut(s)	313, 917
MluNI	TGGCCA	2 cut(s)	313, 917
Mly113I	GGCGCC	1 cut(s)	257
MlyI	GAGTC	4 cut(s)	7, 17, 206, 257
MmeI	TCCRAC	4 cut(s)	848, 1473, 1540, 1670
Mox20I	TGGCCA	2 cut(s)	313, 917
Mph1103I	ATGCAT	1 cut(s)	2207
MreI	CGCCGGCG	1 cut(s)	253
MroI	TCCGGA	2 cut(s)	700, 1435
MroNI	GCCGGC	1 cut(s)	253
MscI	TGGCCA	2 cut(s)	313, 917
MseI	TTAA	3 cut(s)	639, 1758, 2102
MslI	CAYNNNNRTG	2 cut(s)	1013, 1601
Msp20I	TGGCCA	2 cut(s)	313, 917
MspA1I	CMGCKG	1 cut(s)	497
MspR9I	CCNGG	5 cut(s)	169, 170, 436, 814, 857
MunI	CAATTG	2 cut(s)	1352, 2108
Mva1269I	GAATGC	1 cut(s)	2207
MvnI	CGCG	5 cut(s)	44, 497, 548, 591, 650
NaeI	GCCGGC	1 cut(s)	255
NarI	GGCGCC	1 cut(s)	257
NciI	CCSGG	5 cut(s)	169, 170, 436, 814, 857
NcoI	CCATGG	2 cut(s)	962, 1946
NdeI	CATATG	1 cut(s)	2321
NgoMIV	GCCGGC	1 cut(s)	253
NlaIII	CATG	8 cut(s)	966, 1274, 1471, 1600, 1663, 1720, 1950, 2000
NlaIV	GGNNCC	6 cut(s)	58, 258, 817, 818, 1635, 2221
NmeAIII	GCCGAG	3 cut(s)	31, 199, 967
NruI	TCGCGA	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	2207
NspI	RCATGY	2 cut(s)	1274, 1663
PaeI	GCATGC	1 cut(s)	1663
PagI	TCATGA	1 cut(s)	1467
PaqCI	CACCTGC	1 cut(s)	2257
PauI	GCGCGC	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	1 cut(s)	509
PctI	GAATGC	1 cut(s)	2207
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	8 cut(s)	49, 500, 524, 1471, 1808, 1860, 1938, 2162
PflMI	CCANNNNNTGG	1 cut(s)	1206
PleI	GAGTC	4 cut(s)	7, 16, 206, 257
PluTI	GGCGCC	1 cut(s)	260
PpsI	GAGTC	4 cut(s)	7, 16, 206, 257
PpuMI	RGGWCCY	2 cut(s)	816, 2311
Psp124BI	GAGCTC	3 cut(s)	180, 468, 617
Psp1406I	AACGTT	1 cut(s)	1970
Psp5II	RGGWCCY	2 cut(s)	816, 2311
PspFI	CCCAGC	1 cut(s)	686
PspN4I	GGNNCC	6 cut(s)	58, 258, 817, 818, 1635, 2221
PspPI	GGNCC	5 cut(s)	56, 171, 816, 1518, 2311
PspPPI	RGGWCCY	2 cut(s)	816, 2311
PstI	CTGCAG	1 cut(s)	870
PstNI	CAGNNNCTG	1 cut(s)	408
PsuI	RGATCY	4 cut(s)	438, 697, 1622, 2219
PteI	GCGCGC	1 cut(s)	589
RruI	TCGCGA	1 cut(s)	44
RsaI	GTAC	2 cut(s)	203, 1362
RsaNI	GTAC	2 cut(s)	202, 1361
RseI	CAYNNNNRTG	2 cut(s)	1013, 1601
SacI	GAGCTC	3 cut(s)	180, 468, 617
SacII	CCGCGG	1 cut(s)	498
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	3 cut(s)	639, 1758, 2102
Sau96I	GGNCC	5 cut(s)	56, 171, 816, 1518, 2311
SchI	GAGTC	4 cut(s)	7, 17, 206, 257
ScrFI	CCNGG	5 cut(s)	169, 170, 436, 814, 857
SduI	GDGCHC	5 cut(s)	180, 468, 617, 961, 2134
SfaNI	GCATC	5 cut(s)	494, 1424, 1486, 1573, 2179
SfcI	CTRYAG	3 cut(s)	866, 1664, 2061
SfoI	GGCGCC	1 cut(s)	258
Sfr303I	CCGCGG	1 cut(s)	498
SgrAI	CRCCGGYG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	498
SinI	GGWCC	3 cut(s)	816, 1518, 2311
SmaI	CCCGGG	1 cut(s)	170
SmiMI	CAYNNNNRTG	2 cut(s)	1013, 1601
SmlI	CTYRAG	3 cut(s)	32, 610, 2079
SmoI	CTYRAG	3 cut(s)	32, 610, 2079
SpeI	ACTAGT	1 cut(s)	1868
SphI	GCATGC	1 cut(s)	1663
SspDI	GGCGCC	1 cut(s)	256
SspMI	CTAG	5 cut(s)	1311, 1694, 1869, 2228, 2286
SstI	GAGCTC	3 cut(s)	180, 468, 617
StyD4I	CCNGG	5 cut(s)	167, 168, 434, 812, 855
StyI	CCWWGG	2 cut(s)	962, 1946
TaaI	ACNGT	3 cut(s)	742, 1103, 1774
TaiI	ACGT	4 cut(s)	720, 830, 1973, 2099
TaqI	TCGA	3 cut(s)	11, 392, 1953
TatI	WGTACW	1 cut(s)	1360
TauI	GCSGC	7 cut(s)	434, 511, 562, 650, 840, 1149, 1502
TfiI	GAWTC	8 cut(s)	49, 500, 524, 1471, 1808, 1860, 1938, 2162
Tru1I	TTAA	3 cut(s)	639, 1758, 2102
Tru9I	TTAA	3 cut(s)	639, 1758, 2102
TscAI	CASTG	3 cut(s)	987, 1233, 1290
TseI	GCWGC	9 cut(s)	160, 402, 505, 530, 550, 865, 1223, 1274, 1606
TspGWI	ACGGA	2 cut(s)	478, 1516
TspMI	CCCGGG	1 cut(s)	168
TspRI	CASTG	3 cut(s)	987, 1233, 1290
Van91I	CCANNNNNTGG	1 cut(s)	1206
VneI	GTGCAC	1 cut(s)	957
VpaK11BI	GGWCC	3 cut(s)	816, 1518, 2311
XagI	CCTNNNNNAGG	1 cut(s)	622
XapI	RAATTY	4 cut(s)	976, 1245, 1292, 1571
XbaI	TCTAGA	1 cut(s)	2227
XceI	RCATGY	2 cut(s)	1274, 1663
XcmI	CCANNNNNNNNNTGG	1 cut(s)	889
XmaI	CCCGGG	1 cut(s)	168
XmiI	GTMKAC	2 cut(s)	11, 2064
XspI	CTAG	5 cut(s)	1311, 1694, 1869, 2228, 2286
ZraI	GACGTC	1 cut(s)	718
Zsp2I	ATGCAT	1 cut(s)	2207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.