Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004551

Physical Location & Seq

Genomic Coordinates Forward (+)

57605708 .. 57609497

Gene Structure 3790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG367300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAGGAATTCAGTGCAGTTTGTTGGTCTGTTGTTTTCCATTTTGATGAGGATGGTTTCGGATGTTGAGGATGATCCCTTGTGGCATAACGCTGAGACTGATGATGAGTATGCGGGTGTAAGTGCTGATTACCGTGTTGGGAATGAGTGTTTGCATAGGCTTGCCATTGCGTTTGGTGGCAATGACATTGTTCCTGTTGCGTTGAAGGAGTTACCTGCCTGTTTTGCTTCCAATGAGTGGAAGAAGCACAATGCTGCACTGGTTGCCCTTGCTCAAATTTCTGAGGGTTGTTCAAAGAGTGAGATACAAATGGTGCAAGTAGAAGCATTGACTGCTTTGGCATCAGTTGTTGTTTCATTTCAGGAGCAATTCCAAAAATACTATGAAGTTGTCATGATTCCCCTGAGAGCTATGTTGTTGGATGCCACTAATAACCTGGTTTGGTCCAAGTCTGTGGAATGTATTAGCTTGGTTGGTATGGCTGTTGGAAAGGAGAAATTCAGGGATGATGCTAAGAAAGTCATGGAAGTGCTGATCTCTTCGCAAGGATTTCAAATGGAGGCAGACGACCCAACTACAAGTTGCATGCTACAGACATGTGTTGACCTCTGCAAGTGTTTAGGACAAGATTTTCTCCCTTACGTGAGTATTATAATGCCTCCTTTGCTTCAGTTTGCTCAACTTAAGCCAGATGAAACTATTACATTCACAAATGACAGTAGTGATATTGATGAATCTGATGATGAAAGTATGGAAACAATTACTCTTGGAGATAATAGAATTAGAATCAAGACTAGTCTAGTGGAGGAAAAAGTTGCAGCTTGTAACTTGCTGTGTTACTGTGCTGATGAATTGAAAGAAGAATTCTTTCCATGGATTGATCAGGTTGCTGCAACTTTAGTTCCACTTATATCTTATATCCATGAAAAAGTGAGGAAGTCAGCTGTTTCAGCAATGCCGAAGCTACTGCTTTCTGCAAAGTTAGCTATAGAGAAAAGACAAGCTCAAGGATGTAATGAAACCTATATGAAGAAATTGTCTGACCACATCCTTCCAGCTCTGGCGGAAGCATCACATCAGGAACCTGATACAGAAATCACTGCAATAATATTGGATGCTATAAATGAATGCAGACAGATATCTGGACCACTTCGAGATGAAGCCATGTCACATGCACTTAGTCGAGGAGATAAAGCAGGGATCACTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

403

Amino Acids

44.64

Weight (kDa)

4.68

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Importin_rep_4	PF18808	2 - 65	1e-06	Importin repeat
TPR_IMB1	PF25574	102 - 232	6.5e-06	Importin subunit beta-1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004551)

Species	Orthologous Gene IDs
malus_domestica	MD11G1005500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0054081 RchiOBHm_Chr5g0054171 RchiOBHm_Chr5g0054201 RchiOBHm_Chr5g0054251
rosa_laevigata	RLG00000034915 RLG00000034916 RLG00000034918 RLG00000034920 RLG00000034921
rosa_multiflora	Rmu_sc0000094.1_g000006 Rmu_sc0000509.1_g000025 Rmu_sc0006889.1_g000007 Rmu_sc0010082.1_g000001 Rmu_sc0023670.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026650 Rroxscaffold_1G00026670
rosa_rugosa	Rorug05G0285300
rosa_samantha	Rh5AG354200 Rh5AG354300 Rh5AG354700 Rh5AG355200 Rh5BG366000 Rh5BG366100 Rh5BG367300 Rh5CG390800 Rh5DG055000 Rh5DG380900 Rh5DG381500
rosa_wichuraiana	Rw5G033390 Rw5G033410 Rw5G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
Acc36I	ACCTGC	1 cut(s)	223
AccB7I	CCANNNNNTGG	1 cut(s)	237
AciI	CCGC	2 cut(s)	113, 1064
AclWI	GGATC	2 cut(s)	68, 1208
AcsI	RAATTY	4 cut(s)	7, 276, 497, 863
AcuI	CTGAAG	1 cut(s)	653
AfiI	CCNNNNNNNGG	1 cut(s)	237
AflII	CTTAAG	1 cut(s)	683
AflIII	ACRYGT	1 cut(s)	596
AgsI	TTSAA	4 cut(s)	205, 294, 554, 856
AhlI	ACTAGT	1 cut(s)	794
AjnI	CCWGG	1 cut(s)	435
AluBI	AGCT	8 cut(s)	410, 468, 821, 944, 964, 986, 1004, 1058
AluI	AGCT	8 cut(s)	410, 468, 821, 944, 964, 986, 1004, 1058
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	68, 1208
ApeKI	GCWGC	3 cut(s)	254, 818, 890
ApoI	RAATTY	4 cut(s)	7, 276, 497, 863
Asp700I	GAANNNNTTC	1 cut(s)	867
AspS9I	GGNCC	2 cut(s)	444, 1145
AvaII	GGWCC	2 cut(s)	444, 1145
BbvI	GCAGC	3 cut(s)	241, 830, 877
BccI	CCATC	1 cut(s)	46
BcgI	CGANNNNNNTGC	2 cut(s)	949, 983
BciT130I	CCWGG	1 cut(s)	437
BclI	TGATCA	1 cut(s)	880
BcoDI	GTCTC	1 cut(s)	89
BcuI	ACTAGT	1 cut(s)	794
BfaI	CTAG	3 cut(s)	795, 800, 1210
BfmI	CTRYAG	2 cut(s)	590, 987
BfrI	CTTAAG	1 cut(s)	683
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	3 cut(s)	255, 819, 891
BlsI	GCNGC	3 cut(s)	256, 820, 892
Bme1390I	CCNGG	1 cut(s)	437
Bme18I	GGWCC	2 cut(s)	444, 1145
BmgT120I	GGNCC	2 cut(s)	444, 1145
BmiI	GGNNCC	1 cut(s)	1083
BmrFI	CCNGG	1 cut(s)	437
BmsI	GCATC	5 cut(s)	350, 412, 499, 1079, 1105
BpuEI	CTTGAG	1 cut(s)	990
BsaAI	YACGTR	1 cut(s)	643
BsaJI	CCNNGG	1 cut(s)	872
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	264
Bse3DI	GCAATG	3 cut(s)	165, 187, 960
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	1 cut(s)	872
BseGI	GGATG	8 cut(s)	57, 67, 76, 427, 511, 1016, 1047, 1120
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	3 cut(s)	165, 187, 960
BseMII	CTCAG	3 cut(s)	84, 273, 395
BseNI	ACTGG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	1200
BseXI	GCAGC	3 cut(s)	241, 830, 877
BsgI	GTGCAG	2 cut(s)	35, 240
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	1133
Bsp143I	GATC	4 cut(s)	73, 534, 880, 1200
Bsp19I	CCATGG	1 cut(s)	872
BspACI	CCGC	2 cut(s)	113, 1064
BspCNI	CTCAG	3 cut(s)	85, 274, 396
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	1083
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	68, 1208
BspTI	CTTAAG	1 cut(s)	683
BsrDI	GCAATG	3 cut(s)	165, 187, 960
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	872
BssMI	GATC	4 cut(s)	73, 534, 880, 1200
BssT1I	CCWWGG	1 cut(s)	872
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	3 cut(s)	134, 719, 842
Bst6I	CTCTTC	1 cut(s)	544
BstAFI	CTTAAG	1 cut(s)	683
BstAPI	GCANNNNNTGC	2 cut(s)	263, 332
BstBAI	YACGTR	1 cut(s)	643
BstC8I	GCNNGC	2 cut(s)	162, 587
BstDEI	CTNAG	5 cut(s)	93, 282, 404, 513, 1178
BstDSI	CCRYGG	1 cut(s)	872
BstF5I	GGATG	8 cut(s)	57, 67, 76, 427, 511, 1016, 1047, 1120
BstKTI	GATC	4 cut(s)	76, 537, 883, 1203
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	4 cut(s)	73, 534, 880, 1200
BstMWI	GCNNNNNNNGC	6 cut(s)	224, 263, 332, 664, 950, 983
BstNI	CCWGG	1 cut(s)	437
BstNSI	RCATGY	3 cut(s)	589, 600, 1175
BstSCI	CCNGG	1 cut(s)	435
BstSFI	CTRYAG	2 cut(s)	590, 987
BstV1I	GCAGC	3 cut(s)	241, 830, 877
BstXI	CCANNNNNNTGG	1 cut(s)	454
BtgI	CCRYGG	1 cut(s)	872
BtsCI	GGATG	8 cut(s)	57, 67, 76, 427, 511, 1016, 1047, 1120
BtsI	GCAGTG	1 cut(s)	1098
BtsIMutI	CAGTG	3 cut(s)	18, 257, 1098
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	162, 587
CciI	TCATGA	1 cut(s)	393
Cfr13I	GGNCC	2 cut(s)	444, 1145
CsiI	ACCWGGT	1 cut(s)	435
CviAII	CATG	8 cut(s)	394, 523, 586, 597, 873, 923, 1165, 1172
DdeI	CTNAG	5 cut(s)	93, 282, 404, 513, 1178
DpnI	GATC	4 cut(s)	75, 536, 882, 1202
DpnII	GATC	4 cut(s)	73, 534, 880, 1200
Eam1104I	CTCTTC	1 cut(s)	544
EarI	CTCTTC	1 cut(s)	544
EciI	GGCGGA	1 cut(s)	1079
Eco130I	CCWWGG	1 cut(s)	872
Eco32I	GATATC	1 cut(s)	1140
Eco47I	GGWCC	2 cut(s)	444, 1145
Eco57I	CTGAAG	1 cut(s)	653
EcoRI	GAATTC	2 cut(s)	7, 863
EcoRII	CCWGG	1 cut(s)	435
EcoRV	GATATC	1 cut(s)	1140
EcoT14I	CCWWGG	1 cut(s)	872
ErhI	CCWWGG	1 cut(s)	872
FaeI	CATG	8 cut(s)	397, 526, 589, 600, 876, 926, 1168, 1175
FatI	CATG	8 cut(s)	393, 522, 585, 596, 872, 922, 1164, 1171
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	3 cut(s)	255, 819, 891
FokI	GGATG	8 cut(s)	64, 74, 83, 434, 518, 1023, 1034, 1127
Fsp4HI	GCNGC	3 cut(s)	255, 819, 891
FspBI	CTAG	3 cut(s)	795, 800, 1210
GluI	GCNGC	3 cut(s)	255, 819, 891
Hin1II	CATG	8 cut(s)	397, 526, 589, 600, 876, 926, 1168, 1175
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	3 cut(s)	397, 734, 786
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	4 cut(s)	61, 283, 739, 1042
Hpy188III	TCNNGA	6 cut(s)	362, 394, 790, 1079, 1143, 1154
Hpy8I	GTNNAC	1 cut(s)	604
HpyAV	CCTTC	2 cut(s)	199, 1061
HpyCH4III	ACNGT	3 cut(s)	134, 719, 842
HpyCH4IV	ACGT	1 cut(s)	642
HpyF10VI	GCNNNNNNNGC	6 cut(s)	224, 263, 332, 664, 950, 983
HpyF3I	CTNAG	5 cut(s)	93, 282, 404, 513, 1178
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	8 cut(s)	397, 526, 589, 600, 876, 926, 1168, 1175
Ksp22I	TGATCA	1 cut(s)	880
Kzo9I	GATC	4 cut(s)	73, 534, 880, 1200
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	3 cut(s)	241, 830, 877
LweI	GCATC	5 cut(s)	350, 412, 499, 1079, 1105
MabI	ACCWGGT	1 cut(s)	435
MaeI	CTAG	3 cut(s)	795, 800, 1210
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	4 cut(s)	210, 824, 836, 1167
MalI	GATC	4 cut(s)	75, 536, 882, 1202
MboI	GATC	4 cut(s)	73, 534, 880, 1200
MboII	GAAGA	4 cut(s)	253, 531, 872, 1042
MluCI	AATT	9 cut(s)	7, 276, 368, 497, 759, 780, 851, 863, 1034
MmeI	TCCRAC	2 cut(s)	399, 466
MnlI	CCTC	9 cut(s)	42, 61, 277, 553, 617, 669, 799, 927, 1178
MroXI	GAANNNNTTC	1 cut(s)	867
MseI	TTAA	1 cut(s)	684
MslI	CAYNNNNRTG	2 cut(s)	44, 527
MspA1I	CMGCKG	1 cut(s)	944
MspCI	CTTAAG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	437
Mva1269I	GAATGC	1 cut(s)	1133
MvaI	CCWGG	1 cut(s)	437
MwoI	GCNNNNNNNGC	6 cut(s)	224, 263, 332, 664, 950, 983
NcoI	CCATGG	1 cut(s)	872
NdeII	GATC	4 cut(s)	73, 534, 880, 1200
NlaIII	CATG	8 cut(s)	397, 526, 589, 600, 876, 926, 1168, 1175
NlaIV	GGNNCC	1 cut(s)	1083
NmuCI	GTSAC	1 cut(s)	1167
NspI	RCATGY	3 cut(s)	589, 600, 1175
PaeI	GCATGC	1 cut(s)	589
PagI	TCATGA	1 cut(s)	393
PciI	ACATGT	1 cut(s)	596
PctI	GAATGC	1 cut(s)	1133
PdmI	GAANNNNTTC	1 cut(s)	867
PfeI	GAWTC	3 cut(s)	397, 734, 786
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	256, 820, 892
Ppu21I	YACGTR	1 cut(s)	643
PscI	ACATGT	1 cut(s)	596
PsiI	TTATAA	1 cut(s)	653
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	1083
PspPI	GGNCC	2 cut(s)	444, 1145
PvuII	CAGCTG	1 cut(s)	944
RseI	CAYNNNNRTG	2 cut(s)	44, 527
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	3 cut(s)	255, 819, 891
Sau3AI	GATC	4 cut(s)	73, 534, 880, 1200
Sau96I	GGNCC	2 cut(s)	444, 1145
ScrFI	CCNGG	1 cut(s)	437
SexAI	ACCWGGT	1 cut(s)	435
SfaNI	GCATC	5 cut(s)	350, 412, 499, 1079, 1105
SfcI	CTRYAG	2 cut(s)	590, 987
SinI	GGWCC	2 cut(s)	444, 1145
SmiMI	CAYNNNNRTG	2 cut(s)	44, 527
SmlI	CTYRAG	2 cut(s)	683, 1005
SmoI	CTYRAG	2 cut(s)	683, 1005
SpeI	ACTAGT	1 cut(s)	794
SphI	GCATGC	1 cut(s)	589
Sse9I	AATT	9 cut(s)	7, 276, 368, 497, 759, 780, 851, 863, 1034
SsiI	CCGC	2 cut(s)	113, 1064
SspI	AATATT	1 cut(s)	1110
SspMI	CTAG	3 cut(s)	795, 800, 1210
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	872
TaaI	ACNGT	3 cut(s)	134, 719, 842
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	2 cut(s)	1153, 1183
TasI	AATT	9 cut(s)	7, 276, 368, 497, 759, 780, 851, 863, 1034
TfiI	GAWTC	3 cut(s)	397, 734, 786
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	3 cut(s)	18, 264, 1105
TseFI	GTSAC	1 cut(s)	1167
TseI	GCWGC	3 cut(s)	254, 818, 890
Tsp45I	GTSAC	1 cut(s)	1167
TspRI	CASTG	3 cut(s)	18, 264, 1105
Van91I	CCANNNNNTGG	1 cut(s)	237
Vha464I	CTTAAG	1 cut(s)	683
VpaK11BI	GGWCC	2 cut(s)	444, 1145
XapI	RAATTY	4 cut(s)	7, 276, 497, 863
XceI	RCATGY	3 cut(s)	589, 600, 1175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	867
XspI	CTAG	3 cut(s)	795, 800, 1210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.