Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004551

Physical Location & Seq

Genomic Coordinates Forward (+)

32757936 .. 32758697

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0285300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAATATCAGAGAGAATCTAATCTTCGGCCTCCTAGCAATCCTTTTCCTCATCGTCACTACCAATGCATCATCGATTCAATCTTGCAATCGATCGTATTCGAGCTCCTTCGGACCCGATCGCTTGCCATATCCATTCGGATGCTCAGCCGGCTGTGAAATCCGACTCAATTGTACCGAAAACGCCGGAGTCTTCATCGGAGATTTCCCCGTCCGGTCGATAGACTTCGAGAGCATAAGAATCAACCTCCAAAGCCGATGCAACCGTCCCTTGCACACCCTCCACCAACTATACAGCAACCACCACGCGCCGACTTCCCGAAACTCCTTTCTGTTACGAAACTGCACGGACGATCAGGCCTCCAGCAGTTGCGAGATTCCTAGTATCCAGGTCGAGGCCAGGTTTCAGGCCCCACAGGATTGCAGCAAAAATACAAGCCTCAGTTGCTACGCGGAGAGCAATAAGAATGCTACGTTTTTGGAATACGAGAGCGTCGAGAAGAAGGGCTGCATGTACTTGCTGTCGTCCATGTCGGCACAGATTTTGAATAACACGCAGACGCCGTCGGTGACGTTGGATGTTGAAGTGGCGGAGTTGGGGTGGTGGCTGCCAGGAGTTTGCAATTGTGATAAAAACGCCCAGTGTTTTCCTGTTTTGACGCCGACTGGAAGCTACGGATACAGGTGCAACTGCACGGAGGGCTTCGTCGGAGATGGTTTTCGGGCTGGCTTTGGCTGCCGGAAAGGTCAGTTGAGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

253

Amino Acids

27.99

Weight (kDa)

6.42

Isoelectric Point (pI)

55.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004551)

Species	Orthologous Gene IDs
malus_domestica	MD11G1005500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0054081 RchiOBHm_Chr5g0054171 RchiOBHm_Chr5g0054201 RchiOBHm_Chr5g0054251
rosa_laevigata	RLG00000034915 RLG00000034916 RLG00000034918 RLG00000034920 RLG00000034921
rosa_multiflora	Rmu_sc0000094.1_g000006 Rmu_sc0000509.1_g000025 Rmu_sc0006889.1_g000007 Rmu_sc0010082.1_g000001 Rmu_sc0023670.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026650 Rroxscaffold_1G00026670
rosa_rugosa	Rorug05G0285300
rosa_samantha	Rh5AG354200 Rh5AG354300 Rh5AG354700 Rh5AG355200 Rh5BG366000 Rh5BG366100 Rh5BG367300 Rh5CG390800 Rh5DG055000 Rh5DG380900 Rh5DG381500
rosa_wichuraiana	Rw5G033390 Rw5G033410 Rw5G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	308, 452
AciI	CCGC	2 cut(s)	452, 590
AcyI	GRCGYC	2 cut(s)	560, 659
AfaI	GTAC	2 cut(s)	175, 515
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	3 cut(s)	80, 547, 584
AjnI	CCWGG	3 cut(s)	387, 398, 610
AluBI	AGCT	2 cut(s)	105, 672
AluI	AGCT	2 cut(s)	105, 672
Alw21I	GWGCWC	1 cut(s)	107
AoxI	GGCC	4 cut(s)	28, 357, 396, 408
ApeKI	GCWGC	4 cut(s)	423, 507, 607, 735
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	113, 409
AsuHPI	GGTGA	1 cut(s)	580
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	4 cut(s)	435, 494, 594, 722
BccI	CCATC	1 cut(s)	707
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	3 cut(s)	389, 400, 612
BciVI	GTATCC	2 cut(s)	395, 671
BfaI	CTAG	2 cut(s)	35, 381
BfuI	GTATCC	2 cut(s)	395, 671
BglII	AGATCT	1 cut(s)	755
BisI	GCNGC	4 cut(s)	424, 508, 608, 736
BlpI	GCTNAGC	1 cut(s)	145
BlsI	GCNGC	4 cut(s)	425, 509, 609, 737
Bme1390I	CCNGG	3 cut(s)	389, 400, 612
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	113, 409
BmiI	GGNNCC	2 cut(s)	115, 411
BmrFI	CCNGG	3 cut(s)	389, 400, 612
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	3 cut(s)	77, 131, 248
BmuI	ACTGGG	1 cut(s)	634
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	346
Bpu1102I	GCTNAGC	1 cut(s)	145
Bsa29I	ATCGAT	2 cut(s)	74, 91
BsaHI	GRCGYC	2 cut(s)	560, 659
BsaWI	WCCGGW	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	640, 670
BseBI	CCWGG	3 cut(s)	389, 400, 612
BseCI	ATCGAT	2 cut(s)	74, 91
BseGI	GGATG	2 cut(s)	146, 583
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMII	CTCAG	2 cut(s)	159, 454
BseNI	ACTGG	2 cut(s)	640, 670
BseXI	GCAGC	4 cut(s)	435, 494, 594, 722
BsgI	GTGCAG	2 cut(s)	328, 676
Bsh1236I	CGCG	2 cut(s)	308, 452
Bsh1285I	CGRYCG	3 cut(s)	95, 121, 218
BshFI	GGCC	4 cut(s)	30, 359, 398, 410
BshVI	ATCGAT	2 cut(s)	74, 91
BsiEI	CGRYCG	3 cut(s)	95, 121, 218
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	4 cut(s)	150, 186, 214, 739
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	4 cut(s)	30, 359, 398, 410
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	92, 118, 352, 755
Bsp1720I	GCTNAGC	1 cut(s)	145
BspACI	CCGC	2 cut(s)	452, 590
BspANI	GGCC	4 cut(s)	30, 359, 398, 410
BspCNI	CTCAG	2 cut(s)	158, 453
BspDI	ATCGAT	2 cut(s)	74, 91
BspFNI	CGCG	2 cut(s)	308, 452
BspLI	GGNNCC	2 cut(s)	115, 411
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	640, 670
BssAI	RCCGGY	1 cut(s)	149
BssMI	GATC	4 cut(s)	92, 118, 352, 755
BssNI	GRCGYC	2 cut(s)	560, 659
Bst2UI	CCWGG	3 cut(s)	389, 400, 612
Bst4CI	ACNGT	1 cut(s)	266
BstACI	GRCGYC	2 cut(s)	560, 659
BstC8I	GCNNGC	3 cut(s)	125, 151, 727
BstDEI	CTNAG	3 cut(s)	145, 440, 759
BstF5I	GGATG	2 cut(s)	146, 583
BstFNI	CGCG	2 cut(s)	308, 452
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	4 cut(s)	95, 121, 355, 758
BstMBI	GATC	4 cut(s)	92, 118, 352, 755
BstMCI	CGRYCG	3 cut(s)	95, 121, 218
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 444, 699, 735
BstNI	CCWGG	3 cut(s)	389, 400, 612
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	3 cut(s)	387, 398, 610
BstUI	CGCG	2 cut(s)	308, 452
BstV1I	GCAGC	4 cut(s)	435, 494, 594, 722
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	755
BstYI	RGATCY	1 cut(s)	755
Bsu15I	ATCGAT	2 cut(s)	74, 91
BsuI	GTATCC	2 cut(s)	395, 671
BsuRI	GGCC	4 cut(s)	30, 359, 398, 410
BsuTUI	ATCGAT	2 cut(s)	74, 91
BtsCI	GGATG	2 cut(s)	146, 583
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	3 cut(s)	125, 151, 727
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	113, 409
ClaI	ATCGAT	2 cut(s)	74, 91
CseI	GACGC	3 cut(s)	481, 568, 667
Csp6I	GTAC	2 cut(s)	174, 514
CviAII	CATG	2 cut(s)	511, 529
CviQI	GTAC	2 cut(s)	174, 514
DdeI	CTNAG	3 cut(s)	145, 440, 759
DpnI	GATC	4 cut(s)	94, 120, 354, 757
DpnII	GATC	4 cut(s)	92, 118, 352, 755
EciI	GGCGGA	1 cut(s)	605
Ecl136II	GAGCTC	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRII	CCWGG	3 cut(s)	387, 398, 610
EcoT22I	ATGCAT	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	107
FaeI	CATG	2 cut(s)	514, 532
FaiI	YATR	5 cut(s)	130, 236, 292, 512, 530
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	2 cut(s)	510, 528
Fnu4HI	GCNGC	4 cut(s)	424, 508, 608, 736
FokI	GGATG	2 cut(s)	153, 590
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	4 cut(s)	424, 508, 608, 736
FspBI	CTAG	2 cut(s)	35, 381
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	4 cut(s)	424, 508, 608, 736
GsuI	CTGGAG	1 cut(s)	346
HaeIII	GGCC	4 cut(s)	30, 359, 398, 410
HapII	CCGG	4 cut(s)	150, 186, 214, 739
HgaI	GACGC	3 cut(s)	481, 568, 667
HhaI	GCGC	1 cut(s)	310
Hin1I	GRCGYC	2 cut(s)	560, 659
Hin1II	CATG	2 cut(s)	514, 532
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	6 cut(s)	16, 76, 165, 189, 240, 376
HpaII	CCGG	4 cut(s)	150, 186, 214, 739
HphI	GGTGA	1 cut(s)	580
Hpy188I	TCNGA	6 cut(s)	11, 113, 140, 164, 200, 710
Hpy188III	TCNNGA	3 cut(s)	229, 318, 496
Hpy99I	CGWCG	3 cut(s)	497, 568, 710
HpyAV	CCTTC	2 cut(s)	118, 496
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	2 cut(s)	473, 572
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 444, 699, 735
HpyF3I	CTNAG	3 cut(s)	145, 440, 759
HpySE526I	ACGT	2 cut(s)	473, 572
Hsp92I	GRCGYC	2 cut(s)	560, 659
Hsp92II	CATG	2 cut(s)	514, 532
HspAI	GCGC	1 cut(s)	308
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	92, 118, 352, 755
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	4 cut(s)	435, 494, 594, 722
LweI	GCATC	3 cut(s)	77, 131, 248
MaeI	CTAG	2 cut(s)	35, 381
MaeII	ACGT	2 cut(s)	473, 572
MaeIII	GTNAC	3 cut(s)	55, 333, 568
MalI	GATC	4 cut(s)	94, 120, 354, 757
MboI	GATC	4 cut(s)	92, 118, 352, 755
MboII	GAAGA	3 cut(s)	16, 184, 511
MfeI	CAATTG	2 cut(s)	169, 622
MflI	RGATCY	1 cut(s)	755
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	2 cut(s)	169, 622
MlyI	GAGTC	2 cut(s)	159, 198
MmeI	TCCRAC	3 cut(s)	187, 555, 688
MnlI	CCTC	8 cut(s)	41, 59, 257, 290, 370, 388, 449, 691
Mph1103I	ATGCAT	1 cut(s)	70
MroNI	GCCGGC	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	139
MspI	CCGG	4 cut(s)	150, 186, 214, 739
MspR9I	CCNGG	3 cut(s)	389, 400, 612
MunI	CAATTG	2 cut(s)	169, 622
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	3 cut(s)	389, 400, 612
MvnI	CGCG	2 cut(s)	308, 452
MwoI	GCNNNNNNNGC	4 cut(s)	150, 444, 699, 735
NaeI	GCCGGC	1 cut(s)	151
NdeII	GATC	4 cut(s)	92, 118, 352, 755
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	514, 532
NlaIV	GGNNCC	2 cut(s)	115, 411
NmuCI	GTSAC	2 cut(s)	55, 568
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	514
PceI	AGGCCT	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	2 cut(s)	492, 560
PctI	GAATGC	1 cut(s)	472
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	4 cut(s)	16, 76, 240, 376
PflFI	GACNNNGTC	1 cut(s)	562
PkrI	GCNGC	4 cut(s)	425, 509, 609, 737
Ple19I	CGATCG	2 cut(s)	95, 121
PleI	GAGTC	2 cut(s)	159, 197
PpsI	GAGTC	2 cut(s)	159, 197
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	3 cut(s)	387, 398, 610
PspGI	CCWGG	3 cut(s)	387, 398, 610
PspN4I	GGNNCC	2 cut(s)	115, 411
PspPI	GGNCC	2 cut(s)	113, 409
PsuI	RGATCY	1 cut(s)	755
PsyI	GACNNNGTC	1 cut(s)	562
PvuI	CGATCG	2 cut(s)	95, 121
RsaI	GTAC	2 cut(s)	175, 515
RsaNI	GTAC	2 cut(s)	174, 514
RseI	CAYNNNNRTG	1 cut(s)	139
SacI	GAGCTC	1 cut(s)	107
SatI	GCNGC	4 cut(s)	424, 508, 608, 736
Sau3AI	GATC	4 cut(s)	92, 118, 352, 755
Sau96I	GGNCC	2 cut(s)	113, 409
SchI	GAGTC	2 cut(s)	159, 198
ScrFI	CCNGG	3 cut(s)	389, 400, 612
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	9 cut(s)	107, 249, 393, 404, 476, 575, 674, 686, 748
SfaNI	GCATC	3 cut(s)	77, 131, 248
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	139
Sse9I	AATT	2 cut(s)	169, 622
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	2 cut(s)	452, 590
SspMI	CTAG	2 cut(s)	35, 381
SstI	GAGCTC	1 cut(s)	107
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	3 cut(s)	387, 398, 610
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	2 cut(s)	476, 575
TaqI	TCGA	7 cut(s)	74, 91, 101, 218, 228, 393, 495
TasI	AATT	2 cut(s)	169, 622
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	4 cut(s)	16, 76, 240, 376
TscAI	CASTG	1 cut(s)	647
TseFI	GTSAC	2 cut(s)	55, 568
TseI	GCWGC	4 cut(s)	423, 507, 607, 735
Tsp45I	GTSAC	2 cut(s)	55, 568
TspDTI	ATGAA	2 cut(s)	17, 184
TspGWI	ACGGA	3 cut(s)	362, 690, 710
TspRI	CASTG	1 cut(s)	647
Tth111I	GACNNNGTC	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	113
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	2 cut(s)	35, 381
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.