Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004551

Physical Location & Seq

Genomic Coordinates Reverse (-)

57040423 .. 57045092

Gene Structure 4670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGGCGGAGTCGACTGAGCATCAGCAACTGGCGGTCATTCTCGGTCCTGAGCCCCCCGCCACTTTCCAAACCGTAATCTCCCACTTAATCTCCTCCCCCTCCTCTTTGCAAACCCTAATCTCCGACCTCATCTCCTCCGAGAAGCGGTCCGAGGCCGAGCTCGTCTTCAACATCTGCAAGCGGACCGATCACGAGTCGCTTTCTCTCAAACTCGCTCAGCTTCTCCAGGTCTCTCCCGACGAGAAGACCCGAACCATGTCCTCCATTCTCCTTCTGAAGCAACTACTCACCCGCGACTTGTGGCGAATACTCTCTCCAAACACCATATCCACCCTCAAACATACTCTATTATCTTGTATTCAACGCGAGGACACCCCAACATCGATTTCGAAGGCCATCGGCTACGCCGTGTCGGAGCTTGCCTCCGCAGTGTTGTTCGTCGACGGCTGGCCGGAGCTCTTGCCCTTTCTGTTCCAATCCACCTCTTACGATGCGCCGCCGAAGCTTCAGGAATGTTCCTTATTGATTTTCTCTCAGCTCGCGTACTTCTTTACCCCGTTTAAGGAGGAATTACACACCGTCTTCTTGTACTGCTTGAGCTCCTCCACAAGGTCAAATGAAGTTAAGATAGCTGCGTTTAGTGCTGTGGTCAATTTCATTCGGTGTTTGCCCTACTCTGAAGATGAGGATAGGTTTCACGACGTCTTGATAGAAATGATGAGAACAGTGATGGGGGAATTGAATAGAAATGATGAGAACCGTGATGGGGGAATTGAACAAAGGGAAGGAGATCATGGCACAGGAGGCGATCAAATTGCTGAAGCCATAGATGTCTTGGAACAAGGGACGAGGCACTTGGCCAATGAGTTTCTGATTACTCTGGCCGAGGCCGGAGAGCATGCACCATGGATAATGAGGAGGTGTCGGGAGTTTGAGTGTTTGCATAAGCTTGCCATTGCCTTGGGTGGCAATAACATTGTTCCAATTGCGTTAGAACACTTTACTGCCCATTTTGCTGCACCCGAGTGGCCCAAGCATCATGCAGCATTGATTGCCCTTGCTCAAATCGCTGAGGGTTGCTCTGAGGTAATGATAAAAGATTTGGAGCAAGTGGTGGCAATGGTTTTGCACTCCTTTGAACATCCACATATAATTCGGGTAAGGTGGTCAGCTATTAATGCAGTTGGACAGTTGTCTACTTATTTGGCCCCAGACCTGCAAGTTCAGTATCATCAACAGGTGTTTTCTGCACTGAATGCCACTATATATGGTTTGCAGAACCGTCGTCTACTGGCATTTGCTGCTTCAGCACTGCAAAAATTCATTGAGAAATGTGCTAGGGATATCTTGACACCTTATTTGGATGAAGTGGTTTCCCAATTGGTTGTACTTTTGCAGAGTGAGATACAAATGGTGCATGTAGAAGCATTGATTGCTTTGGCATCAGTTGTTGTTTCATTTCCGGACCAATACTATGAAGATGTCATGATTCCCCTGAGAGTTATGTTGTTGGATGCCACTAATAGCCTGGTTTGGTCCAAGTCCGTGGAGTGTATAAGCCTGGTTGGTATGGCTGTTGGAAAGGAGAAATTCAAGGAGGATTCTAAGAAAGTCATGGAAGTGCTGATGTCTTTTCAAGGATCTCAAATGGAGCTAGATGACCCAACTGCAAGTTGCATGCTACAGATATGCGCTGACCTCTGCAAGTGTCTAGGACAAGATTTCCTTCCATACATGGGTGCTGTTATGCCTCCTTTGCTTCAGTTTGTTCAAATTAAGCCTGTTGAAACCGTTACCTCCGCAAATGACAATAGTGATATGGATGAATCTGATGATGAAAGTATGGAAACAATTACTCTTGGAGATAAAAGGATTAGAATCAAGACTAGTGTATTGGAGGAAAAAGTTACAGCTTGCAATTTGCTGTGTTGCTATGCTGATGAACTGAAGGAAGGATTCTTTCCATGGATCGATCAGGAACCTGATAGAGAAATCACTGCAATAATATTGGAAGCTTTAAATGAATGCATACAGATATCTGGACCACTTCGAGATGAAGCCATGTCACATGCACCTAGTCGAGGAGATAAAGCTGGGATCACTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

703

Amino Acids

78.36

Weight (kDa)

4.86

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO5	PF25780	129 - 252	3.8e-11	IPO5-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004551)

Species	Orthologous Gene IDs
malus_domestica	MD11G1005500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0054081 RchiOBHm_Chr5g0054171 RchiOBHm_Chr5g0054201 RchiOBHm_Chr5g0054251
rosa_laevigata	RLG00000034915 RLG00000034916 RLG00000034918 RLG00000034920 RLG00000034921
rosa_multiflora	Rmu_sc0000094.1_g000006 Rmu_sc0000509.1_g000025 Rmu_sc0006889.1_g000007 Rmu_sc0010082.1_g000001 Rmu_sc0023670.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026650 Rroxscaffold_1G00026670
rosa_rugosa	Rorug05G0285300
rosa_samantha	Rh5AG354200 Rh5AG354300 Rh5AG354700 Rh5AG355200 Rh5BG366000 Rh5BG366100 Rh5BG367300 Rh5CG390800 Rh5DG055000 Rh5DG380900 Rh5DG381500
rosa_wichuraiana	Rw5G033390 Rw5G033410 Rw5G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	705
Acc36I	ACCTGC	1 cut(s)	1224
AccI	GTMKAC	4 cut(s)	11, 441, 1196, 1288
AccII	CGCG	3 cut(s)	294, 366, 542
AccIII	TCCGGA	1 cut(s)	1462
AciI	CCGC	9 cut(s)	5, 32, 57, 145, 181, 292, 426, 497, 1800
AclWI	GGATC	3 cut(s)	1648, 1976, 2105
AcoI	YGGCCR	3 cut(s)	449, 858, 882
AcsI	RAATTY	2 cut(s)	1319, 1589
AcuI	CTGAAG	7 cut(s)	296, 491, 699, 840, 1290, 1745, 1967
AcyI	GRCGYC	1 cut(s)	702
AfaI	GTAC	3 cut(s)	545, 590, 1389
AfiI	CCNNNNNNNGG	6 cut(s)	144, 562, 609, 766, 1736, 2081
AgsI	TTSAA	9 cut(s)	169, 362, 742, 776, 1139, 1594, 1637, 1772, 1787
AhlI	ACTAGT	1 cut(s)	1886
AjnI	CCWGG	3 cut(s)	225, 1527, 1560
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AleI	CACNNNNGTG	1 cut(s)	1024
Alw21I	GWGCWC	3 cut(s)	162, 459, 602
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	3 cut(s)	1648, 1976, 2105
AlwNI	CAGNNNCTG	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	1022
Aor13HI	TCCGGA	1 cut(s)	1462
AoxI	GGCC	8 cut(s)	153, 393, 449, 858, 882, 888, 1028, 1206
ApeKI	GCWGC	4 cut(s)	632, 1016, 1043, 1301
ApoI	RAATTY	2 cut(s)	1319, 1589
ArsI	GACNNNNNNTTYG	2 cut(s)	1342, 1374
AseI	ATTAAT	1 cut(s)	1176
AspLEI	GCGC	2 cut(s)	496, 1694
AspS9I	GGNCC	8 cut(s)	44, 147, 183, 1029, 1207, 1465, 1536, 2042
AsuHPI	GGTGA	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	1022
AvaII	GGWCC	6 cut(s)	44, 147, 183, 1465, 1536, 2042
BalI	TGGCCA	1 cut(s)	860
BanII	GRGCYC	4 cut(s)	54, 162, 459, 602
BauI	CACGAG	1 cut(s)	191
BbsI	GAAGAC	3 cut(s)	157, 251, 574
Bbv12I	GWGCWC	3 cut(s)	162, 459, 602
BbvCI	CCTCAGC	1 cut(s)	1071
BbvI	GCAGC	4 cut(s)	619, 1003, 1055, 1288
BccI	CCATC	3 cut(s)	404, 724, 758
BceAI	ACGGC	2 cut(s)	392, 460
BcgI	CGANNNNNNTGC	4 cut(s)	797, 831, 1265, 1299
BciT130I	CCWGG	3 cut(s)	227, 1529, 1562
BcoDI	GTCTC	1 cut(s)	235
BcuI	ACTAGT	1 cut(s)	1886
BfaI	CTAG	5 cut(s)	1338, 1655, 1712, 1887, 2076
BfmI	CTRYAG	1 cut(s)	1682
BfuAI	ACCTGC	1 cut(s)	1224
BisI	GCNGC	5 cut(s)	497, 633, 1017, 1044, 1302
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	5 cut(s)	498, 634, 1018, 1045, 1303
Bme1390I	CCNGG	3 cut(s)	227, 1529, 1562
Bme18I	GGWCC	6 cut(s)	44, 147, 183, 1465, 1536, 2042
BmeT110I	CYCGRG	1 cut(s)	1022
BmgT120I	GGNCC	8 cut(s)	44, 147, 183, 1029, 1207, 1465, 1536, 2042
BmiI	GGNNCC	2 cut(s)	1209, 1980
BmrFI	CCNGG	3 cut(s)	227, 1529, 1562
BmsI	GCATC	5 cut(s)	28, 481, 1045, 1451, 1504
BoxI	GACNNNNGTC	1 cut(s)	1192
BpiI	GAAGAC	3 cut(s)	157, 251, 574
BplI	GAGNNNNNCTC	4 cut(s)	407, 439, 1064, 1096
BpmI	CTGGAG	1 cut(s)	209
Bpu10I	CCTNAGC	2 cut(s)	48, 1071
Bpu1102I	GCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	616
Bsa29I	ATCGAT	2 cut(s)	383, 1971
BsaBI	GATNNNNATC	1 cut(s)	1877
BsaHI	GRCGYC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	6 cut(s)	150, 885, 905, 960, 1545, 1964
BsaWI	WCCGGW	1 cut(s)	1462
BsaXI	ACNNNNNCTCC	6 cut(s)	74, 104, 116, 146, 920, 950
Bsc4I	CCNNNNNNNGG	6 cut(s)	144, 562, 609, 766, 1736, 2081
Bse1I	ACTGG	2 cut(s)	33, 1296
Bse3DI	GCAATG	2 cut(s)	954, 1125
Bse8I	GATNNNNATC	1 cut(s)	1877
BseAI	TCCGGA	1 cut(s)	1462
BseBI	CCWGG	3 cut(s)	227, 1529, 1562
BseCI	ATCGAT	2 cut(s)	383, 1971
BseDI	CCNNGG	6 cut(s)	150, 885, 905, 960, 1545, 1964
BseGI	GGATG	4 cut(s)	1141, 1369, 1519, 1828
BseJI	GATNNNNATC	1 cut(s)	1877
BseLI	CCNNNNNNNGG	6 cut(s)	144, 562, 609, 766, 1736, 2081
BseMI	GCAATG	2 cut(s)	954, 1125
BseMII	CTCAG	7 cut(s)	6, 39, 230, 548, 1062, 1074, 1487
BseNI	ACTGG	2 cut(s)	33, 1296
BseRI	GAGGAG	6 cut(s)	82, 91, 124, 592, 931, 2097
BseXI	GCAGC	4 cut(s)	619, 1003, 1055, 1288
BseYI	CCCAGC	1 cut(s)	2093
BsgI	GTGCAG	2 cut(s)	1002, 1233
Bsh1236I	CGCG	3 cut(s)	294, 366, 542
BshFI	GGCC	8 cut(s)	155, 395, 451, 860, 884, 890, 1030, 1208
BshVI	ATCGAT	2 cut(s)	383, 1971
BsiHKAI	GWGCWC	3 cut(s)	162, 459, 602
BsiHKCI	CYCGRG	1 cut(s)	1022
BsiSI	CCGG	3 cut(s)	452, 891, 1463
BslFI	GGGAC	1 cut(s)	859
BslI	CCNNNNNNNGG	6 cut(s)	144, 562, 609, 766, 1736, 2081
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	859
BsmI	GAATGC	2 cut(s)	1261, 2030
BsnI	GGCC	8 cut(s)	155, 395, 451, 860, 884, 890, 1030, 1208
Bso31I	GGTCTC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	1022
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	4 cut(s)	54, 162, 459, 602
Bsp13I	TCCGGA	1 cut(s)	1462
Bsp143I	GATC	7 cut(s)	187, 790, 808, 1640, 1968, 1972, 2097
Bsp1720I	GCTNAGC	1 cut(s)	216
Bsp19I	CCATGG	2 cut(s)	905, 1964
BspACI	CCGC	9 cut(s)	5, 32, 57, 145, 181, 292, 426, 497, 1800
BspANI	GGCC	8 cut(s)	155, 395, 451, 860, 884, 890, 1030, 1208
BspCNI	CTCAG	7 cut(s)	7, 40, 229, 547, 1063, 1075, 1488
BspDI	ATCGAT	2 cut(s)	383, 1971
BspEI	TCCGGA	1 cut(s)	1462
BspFNI	CGCG	3 cut(s)	294, 366, 542
BspHI	TCATGA	1 cut(s)	1485
BspLI	GGNNCC	2 cut(s)	1209, 1980
BspMI	ACCTGC	1 cut(s)	1224
BspPI	GGATC	3 cut(s)	1648, 1976, 2105
BspT104I	TTCGAA	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	2 cut(s)	954, 1125
BsrI	ACTGG	2 cut(s)	33, 1296
BssECI	CCNNGG	6 cut(s)	150, 885, 905, 960, 1545, 1964
BssMI	GATC	7 cut(s)	187, 790, 808, 1640, 1968, 1972, 2097
BssNI	GRCGYC	1 cut(s)	702
BssSI	CACGAG	1 cut(s)	191
BssT1I	CCWWGG	3 cut(s)	905, 960, 1964
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	3 cut(s)	227, 1529, 1562
Bst4CI	ACNGT	7 cut(s)	73, 580, 727, 761, 1191, 1283, 1792
BstACI	GRCGYC	1 cut(s)	702
BstAPI	GCANNNNNTGC	4 cut(s)	1052, 1256, 1301, 1433
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	8 cut(s)	179, 420, 449, 540, 900, 951, 1679, 1915
BstDEI	CTNAG	8 cut(s)	15, 48, 216, 534, 1071, 1083, 1496, 1605
BstDSI	CCRYGG	3 cut(s)	905, 1545, 1964
BstENI	CCTNNNNNAGG	2 cut(s)	607, 2079
BstF5I	GGATG	4 cut(s)	1141, 1369, 1519, 1828
BstFNI	CGCG	3 cut(s)	294, 366, 542
BstHHI	GCGC	2 cut(s)	496, 1694
BstKTI	GATC	7 cut(s)	190, 793, 811, 1643, 1971, 1975, 2100
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	7 cut(s)	187, 790, 808, 1640, 1968, 1972, 2097
BstNI	CCWGG	3 cut(s)	227, 1529, 1562
BstNSI	RCATGY	4 cut(s)	902, 1421, 1681, 2072
BstPAI	GACNNNNGTC	1 cut(s)	1192
BstSCI	CCNGG	3 cut(s)	225, 1527, 1560
BstSFI	CTRYAG	1 cut(s)	1682
BstUI	CGCG	3 cut(s)	294, 366, 542
BstV1I	GCAGC	4 cut(s)	619, 1003, 1055, 1288
BstV2I	GAAGAC	3 cut(s)	157, 251, 574
BstX2I	RGATCY	1 cut(s)	1640
BstXI	CCANNNNNNTGG	2 cut(s)	961, 1546
BstYI	RGATCY	1 cut(s)	1640
Bsu15I	ATCGAT	2 cut(s)	383, 1971
BsuRI	GGCC	8 cut(s)	155, 395, 451, 860, 884, 890, 1030, 1208
BsuTUI	ATCGAT	2 cut(s)	383, 1971
BtgI	CCRYGG	3 cut(s)	905, 1545, 1964
BtsCI	GGATG	4 cut(s)	1141, 1369, 1519, 1828
BtsI	GCAGTG	3 cut(s)	435, 1310, 1995
BtsIMutI	CAGTG	5 cut(s)	435, 732, 1250, 1310, 1995
BveI	ACCTGC	1 cut(s)	1224
Cac8I	GCNNGC	8 cut(s)	179, 420, 449, 540, 900, 951, 1679, 1915
CaiI	CAGNNNCTG	1 cut(s)	28
CciI	TCATGA	1 cut(s)	1485
CfoI	GCGC	2 cut(s)	496, 1694
Cfr13I	GGNCC	8 cut(s)	44, 147, 183, 1029, 1207, 1465, 1536, 2042
ClaI	ATCGAT	2 cut(s)	383, 1971
CpoI	CGGWCCG	2 cut(s)	147, 183
Csp6I	GTAC	3 cut(s)	544, 589, 1388
CspI	CGGWCCG	2 cut(s)	147, 183
CviQI	GTAC	3 cut(s)	544, 589, 1388
DdeI	CTNAG	8 cut(s)	15, 48, 216, 534, 1071, 1083, 1496, 1605
DpnI	GATC	7 cut(s)	189, 792, 810, 1642, 1970, 1974, 2099
DpnII	GATC	7 cut(s)	187, 790, 808, 1640, 1968, 1972, 2097
DraI	TTTAAA	1 cut(s)	2019
EaeI	YGGCCR	3 cut(s)	449, 858, 882
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	3 cut(s)	160, 457, 600
Eco130I	CCWWGG	3 cut(s)	905, 960, 1964
Eco24I	GRGCYC	4 cut(s)	54, 162, 459, 602
Eco31I	GGTCTC	1 cut(s)	235
Eco32I	GATATC	2 cut(s)	1345, 2037
Eco47I	GGWCC	6 cut(s)	44, 147, 183, 1465, 1536, 2042
Eco53kI	GAGCTC	3 cut(s)	160, 457, 600
Eco57I	CTGAAG	7 cut(s)	296, 491, 699, 840, 1290, 1745, 1967
Eco88I	CYCGRG	1 cut(s)	1022
EcoICRI	GAGCTC	3 cut(s)	160, 457, 600
EcoNI	CCTNNNNNAGG	2 cut(s)	607, 2079
EcoRII	CCWGG	3 cut(s)	225, 1527, 1560
EcoRV	GATATC	2 cut(s)	1345, 2037
EcoT14I	CCWWGG	3 cut(s)	905, 960, 1964
EcoT22I	ATGCAT	1 cut(s)	2030
EcoT38I	GRGCYC	4 cut(s)	54, 162, 459, 602
ErhI	CCWWGG	3 cut(s)	905, 960, 1964
FalI	AAGNNNNNCTT	2 cut(s)	1710, 1742
FaqI	GGGAC	1 cut(s)	859
FauI	CCCGC	2 cut(s)	64, 299
FblI	GTMKAC	4 cut(s)	11, 441, 1196, 1288
Fnu4HI	GCNGC	5 cut(s)	497, 633, 1017, 1044, 1302
FokI	GGATG	4 cut(s)	1128, 1376, 1526, 1835
FriOI	GRGCYC	4 cut(s)	54, 162, 459, 602
Fsp4HI	GCNGC	5 cut(s)	497, 633, 1017, 1044, 1302
FspBI	CTAG	5 cut(s)	1338, 1655, 1712, 1887, 2076
GlaI	GCGC	2 cut(s)	495, 1693
GluI	GCNGC	5 cut(s)	497, 633, 1017, 1044, 1302
GsaI	CCCAGC	1 cut(s)	2097
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	8 cut(s)	155, 395, 451, 860, 884, 890, 1030, 1208
HapII	CCGG	3 cut(s)	452, 891, 1463
HhaI	GCGC	2 cut(s)	496, 1694
Hin1I	GRCGYC	1 cut(s)	702
Hin6I	GCGC	2 cut(s)	494, 1692
HinP1I	GCGC	2 cut(s)	494, 1692
HincII	GTYRAC	2 cut(s)	12, 442
HindII	GTYRAC	2 cut(s)	12, 442
HindIII	AAGCTT	3 cut(s)	503, 947, 2013
HinfI	GANTC	7 cut(s)	8, 194, 1489, 1601, 1826, 1878, 1956
HpaII	CCGG	3 cut(s)	452, 891, 1463
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	4 cut(s)	12, 442, 1197, 1289
Hpy188I	TCNGA	9 cut(s)	124, 139, 151, 276, 415, 679, 873, 1084, 1831
Hpy8I	GTNNAC	4 cut(s)	12, 442, 1197, 1289
Hpy99I	CGWCG	5 cut(s)	242, 443, 446, 704, 1287
HpyAV	CCTTC	6 cut(s)	281, 385, 779, 1736, 1942, 1946
HpyCH4III	ACNGT	7 cut(s)	73, 580, 727, 761, 1191, 1283, 1792
HpyCH4IV	ACGT	1 cut(s)	702
HpyF3I	CTNAG	8 cut(s)	15, 48, 216, 534, 1071, 1083, 1496, 1605
HpySE526I	ACGT	1 cut(s)	702
Hsp92I	GRCGYC	1 cut(s)	702
HspAI	GCGC	2 cut(s)	494, 1692
Kpn2I	TCCGGA	1 cut(s)	1462
Kzo9I	GATC	7 cut(s)	187, 790, 808, 1640, 1968, 1972, 2097
LmnI	GCTCC	5 cut(s)	415, 454, 605, 1105, 1651
Lsp1109I	GCAGC	4 cut(s)	619, 1003, 1055, 1288
LweI	GCATC	5 cut(s)	28, 481, 1045, 1451, 1504
MaeI	CTAG	5 cut(s)	1338, 1655, 1712, 1887, 2076
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	3 cut(s)	1792, 1906, 2064
MalI	GATC	7 cut(s)	189, 792, 810, 1642, 1970, 1974, 2099
MboI	GATC	7 cut(s)	187, 790, 808, 1640, 1968, 1972, 2097
MboII	GAAGA	5 cut(s)	157, 256, 574, 692, 1490
MfeI	CAATTG	2 cut(s)	984, 1379
MflI	RGATCY	1 cut(s)	1640
MhlI	GDGCHC	4 cut(s)	54, 162, 459, 602
MlsI	TGGCCA	1 cut(s)	860
MluNI	TGGCCA	1 cut(s)	860
MlyI	GAGTC	2 cut(s)	17, 203
MmeI	TCCRAC	5 cut(s)	147, 393, 1165, 1491, 1558
Mox20I	TGGCCA	1 cut(s)	860
Mph1103I	ATGCAT	1 cut(s)	2030
MroI	TCCGGA	1 cut(s)	1462
MscI	TGGCCA	1 cut(s)	860
MseI	TTAA	6 cut(s)	86, 561, 624, 1176, 1776, 2018
MslI	CAYNNNNRTG	2 cut(s)	1024, 1619
Msp20I	TGGCCA	1 cut(s)	860
MspI	CCGG	3 cut(s)	452, 891, 1463
MspR9I	CCNGG	3 cut(s)	227, 1529, 1562
MunI	CAATTG	2 cut(s)	984, 1379
Mva1269I	GAATGC	2 cut(s)	1261, 2030
MvaI	CCWGG	3 cut(s)	227, 1529, 1562
MvnI	CGCG	3 cut(s)	294, 366, 542
NcoI	CCATGG	2 cut(s)	905, 1964
NdeII	GATC	7 cut(s)	187, 790, 808, 1640, 1968, 1972, 2097
NlaIV	GGNNCC	2 cut(s)	1209, 1980
NmeAIII	GCCGAG	2 cut(s)	181, 910
NmuCI	GTSAC	1 cut(s)	2064
NsiI	ATGCAT	1 cut(s)	2030
NspI	RCATGY	4 cut(s)	902, 1421, 1681, 2072
NspV	TTCGAA	1 cut(s)	389
OliI	CACNNNNGTG	1 cut(s)	1024
PaeI	GCATGC	2 cut(s)	902, 1681
PagI	TCATGA	1 cut(s)	1485
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PctI	GAATGC	2 cut(s)	1261, 2030
PfeI	GAWTC	5 cut(s)	1489, 1601, 1826, 1878, 1956
PkrI	GCNGC	5 cut(s)	498, 634, 1018, 1045, 1303
PleI	GAGTC	2 cut(s)	16, 202
PpsI	GAGTC	2 cut(s)	16, 202
PshAI	GACNNNNGTC	1 cut(s)	1192
PshBI	ATTAAT	1 cut(s)	1176
Psp124BI	GAGCTC	3 cut(s)	162, 459, 602
Psp6I	CCWGG	3 cut(s)	225, 1527, 1560
PspFI	CCCAGC	1 cut(s)	2093
PspGI	CCWGG	3 cut(s)	225, 1527, 1560
PspN4I	GGNNCC	2 cut(s)	1209, 1980
PspPI	GGNCC	8 cut(s)	44, 147, 183, 1029, 1207, 1465, 1536, 2042
PstNI	CAGNNNCTG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	1640
RsaI	GTAC	3 cut(s)	545, 590, 1389
RsaNI	GTAC	3 cut(s)	544, 589, 1388
RseI	CAYNNNNRTG	2 cut(s)	1024, 1619
Rsr2I	CGGWCCG	2 cut(s)	147, 183
RsrII	CGGWCCG	2 cut(s)	147, 183
SacI	GAGCTC	3 cut(s)	162, 459, 602
SalI	GTCGAC	2 cut(s)	10, 440
SaqAI	TTAA	6 cut(s)	86, 561, 624, 1176, 1776, 2018
SatI	GCNGC	5 cut(s)	497, 633, 1017, 1044, 1302
Sau3AI	GATC	7 cut(s)	187, 790, 808, 1640, 1968, 1972, 2097
Sau96I	GGNCC	8 cut(s)	44, 147, 183, 1029, 1207, 1465, 1536, 2042
SchI	GAGTC	2 cut(s)	17, 203
ScrFI	CCNGG	3 cut(s)	227, 1529, 1562
SduI	GDGCHC	4 cut(s)	54, 162, 459, 602
SfaNI	GCATC	5 cut(s)	28, 481, 1045, 1451, 1504
SfcI	CTRYAG	1 cut(s)	1682
SfuI	TTCGAA	1 cut(s)	389
SgrDI	CGTCGACG	1 cut(s)	440
SinI	GGWCC	6 cut(s)	44, 147, 183, 1465, 1536, 2042
SmiMI	CAYNNNNRTG	2 cut(s)	1024, 1619
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
SpeI	ACTAGT	1 cut(s)	1886
SphI	GCATGC	2 cut(s)	902, 1681
SsiI	CCGC	9 cut(s)	5, 32, 57, 145, 181, 292, 426, 497, 1800
SspI	AATATT	1 cut(s)	2007
SspMI	CTAG	5 cut(s)	1338, 1655, 1712, 1887, 2076
SstI	GAGCTC	3 cut(s)	162, 459, 602
StyD4I	CCNGG	3 cut(s)	225, 1527, 1560
StyI	CCWWGG	3 cut(s)	905, 960, 1964
TaaI	ACNGT	7 cut(s)	73, 580, 727, 761, 1191, 1283, 1792
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	7 cut(s)	11, 383, 389, 441, 1971, 2050, 2080
TaqII	GACCGA	2 cut(s)	32, 200
TatI	WGTACW	2 cut(s)	588, 1387
TauI	GCSGC	1 cut(s)	499
TfiI	GAWTC	5 cut(s)	1489, 1601, 1826, 1878, 1956
Tru1I	TTAA	6 cut(s)	86, 561, 624, 1176, 1776, 2018
Tru9I	TTAA	6 cut(s)	86, 561, 624, 1176, 1776, 2018
TscAI	CASTG	5 cut(s)	435, 732, 1257, 1317, 2002
TseFI	GTSAC	1 cut(s)	2064
TseI	GCWGC	4 cut(s)	632, 1016, 1043, 1301
Tsp45I	GTSAC	1 cut(s)	2064
TspGWI	ACGGA	1 cut(s)	1534
TspRI	CASTG	5 cut(s)	435, 732, 1257, 1317, 2002
VpaK11BI	GGWCC	6 cut(s)	44, 147, 183, 1465, 1536, 2042
VspI	ATTAAT	1 cut(s)	1176
XagI	CCTNNNNNAGG	2 cut(s)	607, 2079
XapI	RAATTY	2 cut(s)	1319, 1589
XceI	RCATGY	4 cut(s)	902, 1421, 1681, 2072
XcmI	CCANNNNNNNNNTGG	2 cut(s)	832, 1525
XmiI	GTMKAC	4 cut(s)	11, 441, 1196, 1288
XspI	CTAG	5 cut(s)	1338, 1655, 1712, 1887, 2076
ZraI	GACGTC	1 cut(s)	703
Zsp2I	ATGCAT	1 cut(s)	2030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.