Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004551

Physical Location & Seq

Genomic Coordinates Forward (+)

4694330 .. 4695235

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG055000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAGCATTGTAATACCTCCTTTGCTTCAGTTTGCTCAACTTAAGCCAGATGAAACTATTACCTCCGCAAATGACAATAGTGATATTGATGAATATGATGACGAAAGTATGGAAACAATTACTCTTGGAGACAAAAGGATTAGAATCAAGAGTAGTGTATTGGAGGAAAAAGTCGCAGCTTACAATTTGCTGTGTTACTATGCTGATGAATTGAAAGAAGGATTCTTTCCGTGGATTGATCAGCAATGCGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

85

Amino Acids

9.71

Weight (kDa)

4.1

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004551)

Species	Orthologous Gene IDs
malus_domestica	MD11G1005500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0054081 RchiOBHm_Chr5g0054171 RchiOBHm_Chr5g0054201 RchiOBHm_Chr5g0054251
rosa_laevigata	RLG00000034915 RLG00000034916 RLG00000034918 RLG00000034920 RLG00000034921
rosa_multiflora	Rmu_sc0000094.1_g000006 Rmu_sc0000509.1_g000025 Rmu_sc0006889.1_g000007 Rmu_sc0010082.1_g000001 Rmu_sc0023670.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026650 Rroxscaffold_1G00026670
rosa_rugosa	Rorug05G0285300
rosa_samantha	Rh5AG354200 Rh5AG354300 Rh5AG354700 Rh5AG355200 Rh5BG366000 Rh5BG366100 Rh5BG367300 Rh5CG390800 Rh5DG055000 Rh5DG380900 Rh5DG381500
rosa_wichuraiana	Rw5G033390 Rw5G033410 Rw5G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	66, 249
AcuI	CTGAAG	1 cut(s)	11
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	188
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	41
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	230
BseJI	GATNNNNATC	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	2 cut(s)	66, 249
BspTI	CTTAAG	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	1 cut(s)	238
BstAFI	CTTAAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	230
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	230
CviJI	RGCY	2 cut(s)	46, 179
CviKI_1	RGCY	2 cut(s)	46, 179
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	11
FaiI	YATR	3 cut(s)	96, 110, 201
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
HinfI	GANTC	3 cut(s)	144, 222, 252
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	1 cut(s)	60
Lsp1109I	GCAGC	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MluCI	AATT	3 cut(s)	117, 184, 209
MnlI	CCTC	3 cut(s)	27, 73, 157
MseI	TTAA	1 cut(s)	42
MspCI	CTTAAG	1 cut(s)	41
NdeII	GATC	1 cut(s)	238
PfeI	GAWTC	3 cut(s)	144, 222, 252
PkrI	GCNGC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	238
SetI	ASST	3 cut(s)	19, 65, 181
SgeI	CNNG	4 cut(s)	59, 137, 160, 243
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	117, 184, 209
SsiI	CCGC	2 cut(s)	66, 249
TasI	AATT	3 cut(s)	117, 184, 209
TfiI	GAWTC	3 cut(s)	144, 222, 252
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	66, 105, 222
TspGWI	ACGGA	1 cut(s)	219
Vha464I	CTTAAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.