Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004551

Physical Location & Seq

Genomic Coordinates Forward (+)

56942810 .. 56947555

Gene Structure 4746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034915

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2496 bp

ATGGCCGAGTCTGAGTCGCTCCAGCTTCAACTTGAGCAAGTCGCGTCGATTCTTGGCCCCGACCCCCTCGCCTCTTTCAAAACCCTAATCTCTTGCCTCCTCTGCCCGTCCTATTTTGAAAGCCTAATCTCCTCCTCCCTCTTCTCCTCCAATTCCGAGCAGCGATCCCGGGCCGAGCTCGTCTATAACCTCTGCAAAAAGTACGATCCCGACTCGCTCTCCCTCACACTCGCTCACCTCCTCCAATTCTCTCCGGCGCCGGACTCCCGATTTATCTCCGCCGTCCTCCTCCGCAATCAAATCCGCCTCTGGCCAAGCCTCTCGGAGAACACACAATCTACGATCAAATCGGCTCTATTGTTCTCCATTCAACGACAGGACAACACGAAATCGATTTCAGGCAACCTCTGTGATGCCGTTTCTGCACTCGCCGCCGGAATCTTGCCTGAAAACGGCTGGCCGGAGCTCTTGCCCTTTCTGTTCGCATCCGTTTCCGCGGATTCGTTGCCGCCGAAACTTCAGGAATCGGCGGCGTTCATGGTATTCGCGCAGCTGTCGCCGCACTTATTGCCGTATATAAACGAATTGCGCGCAGTCTTCTTGTCCTGCTTGAGCTCCTCGTCCAGGTCAAACGACGTTAAAGTAGCTGCGTTTAATGCGGTGGTCAATTTCATTCGGTGTTTGCCCAGCTCTGAAGATCCGGATATGTTTCACGACGTCTTGATAGAAATGATGAGAACCGTGATGGGGGAATTGAACAAAAAGAACGAGGCCGCGGCGCAGGAGGCGATCAAGTTGTTCATTGAATTGGCCGGGACCCATCCGACGTTGCTCAGCCGCAGGGGGCAGATCGTCCGGGCTATGCTGCAGATTGCTGAAGCCATAGAAGTGTTGGAACAAGGCACGAGGCACTTGGCCATAGAGTTTGTGATCACTTTGGCCGAGGCAGGTGAGCAGGCGCCGTGGATAATGAGGAATTCAGTGCAGTTTGTTGGTCTGTTGTTTTCCATTTTGATGAGGATGGTTTCGGATGTTGAGGATGATCCCTTATGGCATAAGGCTGAGACTGATGACGAGTATGCGAGTGTAAGTGCTGATTACCGTGTTGGGAATGAGTGTTTGCATAGGCTTGCCATTGCGTTGGGCGGCAATGACATTGTTCCTGTTGCATTGAAGGAGTTACCTGCCTATTTTGCTTCCAATGAGTGGAAGAAGCACAATGCTGCACTGGTTGCCCTTGCTCAAATTTCTGAGGGTTGTTCAAAGGTAATGATAAAAGATTTGGAGCAAGCGGTGGCAATGGTTTTGAACTCCTTTGAACATCCACATATTCGGGTAAGGTGGTCAGCGATCAATGCAGTTGGCCAGTTGTCTACTTATTTGGCCCCAGACCTGCAAGTTCAATATCATCAACAGGTGTTTTCTGCACTGAATGCCACTATATATGGTTTGCAGAATCGTCGTCTGCTAGCACATGCTGCTTCAGCACTGCGAAAATTCATTGAGAAATGTGCTAGGGATATCTTGACACCTTATTTGGATGAAGTGGTTTCCCAATTGGTTGTACTTTTGCAGAGTGAGATACAAATGGTGCAAGTAGAAGCATTGACTGCTTTGGCATCAGTTGTTGTTTCATTTCCGGAGCAATTCCAAAAATACTATGAAGTTGTCATGATTCCCCTGAGAGCTATGTTGTTGGATGCCACTAATAACCTGGTTTGGTCCAAGTCTGTGGAATGTATTAGCTTGGTTGGTATGGCTGTTGGAAAGGAGAAATTCAGGGATGATGCTAAGAAAGTCATGGAAGTGCTGATCTCTTCGCAAGGATCTCAAATGGAGGCAGATGATCCAACTACAAGTTGCATGCTACAGACATGTGTTGACCTCTGCAAGTGTTTAGGACAAGATTTTCTCCCTTACATGAGTATTGTAATGCCTCCTTTGCTTCAGTTGGCTCAACTTAAGCCAGATGAAACTATTACATTCACAAATGACAGTAGTGATATTGATGAATCTGATGATGAAAGTATGGAAACAATTACTCTTGGAGATAATAGAATTAGAATCAAGACTAGTCTAGTGGAGGAAAAAGTTGCAGCTTGTAACTTGCTGTGTTACTGTGCTGATGAGTTGAAAGAAGAATTCTTTCCATGGATTGATCAGGTTGCTGCAACTTTAGTTCCACTTATATCTTATATCCATGAAAAAGTGAGGAAGTCAGCTGTTTCAGCTCTGGCGGAAGCATCACATCAGGTTGCTTATTGTTTGTCATGGTCATGGTCATGGTGCGATGCTCTGAATCTTCTCATGATATGTTGTTTGTCTTTTGTGCCACTGAAGTATGAGAATGCAATTACTGTGCAGGAACCTGATACAGAAATCACTGCAATAATATTGGATGCTATAAATGAATGCAGACAGATATCTGGACCATTTCGAGATGAAGCCATGTCACATGCACTTAGTCGAGGAGATAAAGCAGGGATCACTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

832

Amino Acids

92.13

Weight (kDa)

4.86

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO5	PF25780	133 - 280	5.2e-16	IPO5-like, TPR repeats
Importin_rep_4	PF18808	298 - 388	2e-14	Importin repeat
TPR_IMB1	PF25574	491 - 658	7.1e-09	Importin subunit beta-1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004551)

Species	Orthologous Gene IDs
malus_domestica	MD11G1005500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0054081 RchiOBHm_Chr5g0054171 RchiOBHm_Chr5g0054201 RchiOBHm_Chr5g0054251
rosa_laevigata	RLG00000034915 RLG00000034916 RLG00000034918 RLG00000034920 RLG00000034921
rosa_multiflora	Rmu_sc0000094.1_g000006 Rmu_sc0000509.1_g000025 Rmu_sc0006889.1_g000007 Rmu_sc0010082.1_g000001 Rmu_sc0023670.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026650 Rroxscaffold_1G00026670
rosa_rugosa	Rorug05G0285300
rosa_samantha	Rh5AG354200 Rh5AG354300 Rh5AG354700 Rh5AG355200 Rh5BG366000 Rh5BG366100 Rh5BG367300 Rh5CG390800 Rh5DG055000 Rh5DG380900 Rh5DG381500
rosa_wichuraiana	Rw5G033390 Rw5G033410 Rw5G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	938
AatII	GACGTC	1 cut(s)	720
Acc36I	ACCTGC	3 cut(s)	938, 1192, 1401
AccB1I	GGYRCC	2 cut(s)	256, 958
AccB7I	CCANNNNNTGG	1 cut(s)	1206
AccI	GTMKAC	1 cut(s)	1373
AccII	CGCG	5 cut(s)	44, 497, 548, 591, 776
AccIII	TCCGGA	2 cut(s)	700, 1639
AclWI	GGATC	7 cut(s)	159, 200, 692, 1037, 1834, 1841, 2492
AcoI	YGGCCR	7 cut(s)	3, 311, 458, 810, 915, 939, 1363
AcsI	RAATTY	5 cut(s)	976, 1245, 1496, 1775, 2141
AcuI	CTGAAG	6 cut(s)	503, 714, 897, 1467, 1931, 2357
AcyI	GRCGYC	3 cut(s)	257, 717, 959
AfaI	GTAC	2 cut(s)	203, 1566
AfiI	CCNNNNNNNGG	4 cut(s)	452, 624, 747, 1206
AflII	CTTAAG	1 cut(s)	1961
AflIII	ACRYGT	1 cut(s)	1874
AhlI	ACTAGT	1 cut(s)	2072
AjnI	CCWGG	2 cut(s)	623, 1713
Alw21I	GWGCWC	3 cut(s)	180, 468, 617
Alw26I	GTCTC	1 cut(s)	1058
AlwI	GGATC	7 cut(s)	159, 200, 692, 1037, 1834, 1841, 2492
Ama87I	CYCGRG	1 cut(s)	168
Aor13HI	TCCGGA	2 cut(s)	700, 1639
ApeKI	GCWGC	8 cut(s)	160, 550, 647, 865, 1223, 1478, 2096, 2168
ApoI	RAATTY	5 cut(s)	976, 1245, 1496, 1775, 2141
ArsI	GACNNNNNNTTYG	2 cut(s)	1519, 1551
Asp700I	GAANNNNTTC	1 cut(s)	2145
AspLEI	GCGC	6 cut(s)	259, 550, 591, 593, 781, 961
AspS9I	GGNCC	6 cut(s)	56, 171, 816, 1384, 1722, 2429
AsuC2I	CCSGG	4 cut(s)	169, 170, 814, 857
AsuHPI	GGTGA	2 cut(s)	227, 962
AsuNHI	GCTAGC	1 cut(s)	1468
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	3 cut(s)	816, 1722, 2429
BalI	TGGCCA	3 cut(s)	313, 917, 1365
BanI	GGYRCC	2 cut(s)	256, 958
BanII	GRGCYC	3 cut(s)	180, 468, 617
BauI	CACGAG	1 cut(s)	904
BbsI	GAAGAC	1 cut(s)	589
Bbv12I	GWGCWC	3 cut(s)	180, 468, 617
BbvI	GCAGC	8 cut(s)	172, 562, 634, 852, 1210, 1465, 2108, 2155
BccI	CCATC	3 cut(s)	739, 828, 1015
BceAI	ACGGC	5 cut(s)	266, 401, 469, 556, 946
BcgI	CGANNNNNNTGC	2 cut(s)	1442, 1476
BciT130I	CCWGG	2 cut(s)	625, 1715
BclI	TGATCA	2 cut(s)	930, 2158
BcnI	CCSGG	4 cut(s)	169, 170, 814, 857
BcoDI	GTCTC	1 cut(s)	1058
BcuI	ACTAGT	1 cut(s)	2072
BfaI	CTAG	5 cut(s)	1469, 1515, 2073, 2078, 2494
BfmI	CTRYAG	2 cut(s)	866, 1868
BfoI	RGCGCY	2 cut(s)	260, 962
BfrI	CTTAAG	1 cut(s)	1961
BfuAI	ACCTGC	3 cut(s)	938, 1192, 1401
BlpI	GCTNAGC	1 cut(s)	833
Bme1390I	CCNGG	6 cut(s)	169, 170, 625, 814, 857, 1715
Bme18I	GGWCC	3 cut(s)	816, 1722, 2429
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	6 cut(s)	56, 171, 816, 1384, 1722, 2429
BmiI	GGNNCC	7 cut(s)	58, 258, 817, 818, 960, 1386, 2367
BmrFI	CCNGG	6 cut(s)	169, 170, 625, 814, 857, 1715
BmsI	GCATC	8 cut(s)	403, 494, 1628, 1690, 1777, 2252, 2281, 2389
BmtI	GCTAGC	1 cut(s)	1472
BpiI	GAAGAC	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	5
Bpu1102I	GCTNAGC	1 cut(s)	833
BpuEI	CTTGAG	2 cut(s)	53, 631
BpuMI	CCSGG	4 cut(s)	169, 170, 814, 857
Bsa29I	ATCGAT	1 cut(s)	392
BsaHI	GRCGYC	3 cut(s)	257, 717, 959
BsaJI	CCNNGG	6 cut(s)	168, 495, 774, 942, 962, 2150
BsaWI	WCCGGW	2 cut(s)	700, 1639
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	4 cut(s)	452, 624, 747, 1206
Bse1I	ACTGG	2 cut(s)	1233, 1366
Bse3DI	GCAATG	3 cut(s)	1134, 1156, 1305
BseAI	TCCGGA	2 cut(s)	700, 1639
BseBI	CCWGG	2 cut(s)	625, 1715
BseCI	ATCGAT	1 cut(s)	392
BseDI	CCNNGG	6 cut(s)	168, 495, 774, 942, 962, 2150
BseLI	CCNNNNNNNGG	4 cut(s)	452, 624, 747, 1206
BseMI	GCAATG	3 cut(s)	1134, 1156, 1305
BseMII	CTCAG	4 cut(s)	847, 1053, 1242, 1673
BseNI	ACTGG	2 cut(s)	1233, 1366
BsePI	GCGCGC	1 cut(s)	589
BseRI	GAGGAG	8 cut(s)	89, 121, 124, 136, 230, 278, 607, 2484
BseXI	GCAGC	8 cut(s)	172, 562, 634, 852, 1210, 1465, 2108, 2155
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	5 cut(s)	408, 1004, 1209, 1410, 2381
Bsh1236I	CGCG	5 cut(s)	44, 497, 548, 591, 776
BshNI	GGYRCC	2 cut(s)	256, 958
BshVI	ATCGAT	1 cut(s)	392
BsiHKAI	GWGCWC	3 cut(s)	180, 468, 617
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	9 cut(s)	169, 254, 260, 435, 461, 701, 813, 856, 1640
BslFI	GGGAC	1 cut(s)	829
BslI	CCNNNNNNNGG	4 cut(s)	452, 624, 747, 1206
BsmAI	GTCTC	1 cut(s)	1058
BsmFI	GGGAC	1 cut(s)	829
BsmI	GAATGC	3 cut(s)	1438, 2353, 2417
BsoBI	CYCGRG	1 cut(s)	168
Bsp1286I	GDGCHC	3 cut(s)	180, 468, 617
Bsp13I	TCCGGA	2 cut(s)	700, 1639
Bsp1720I	GCTNAGC	1 cut(s)	833
Bsp19I	CCATGG	1 cut(s)	2150
BspCNI	CTCAG	5 cut(s)	4, 846, 1054, 1243, 1674
BspDI	ATCGAT	1 cut(s)	392
BspEI	TCCGGA	2 cut(s)	700, 1639
BspFNI	CGCG	5 cut(s)	44, 497, 548, 591, 776
BspHI	TCATGA	2 cut(s)	1671, 2307
BspLI	GGNNCC	7 cut(s)	58, 258, 817, 818, 960, 1386, 2367
BspMAI	CTGCAG	1 cut(s)	870
BspMI	ACCTGC	3 cut(s)	938, 1192, 1401
BspOI	GCTAGC	1 cut(s)	1472
BspPI	GGATC	7 cut(s)	159, 200, 692, 1037, 1834, 1841, 2492
BspT107I	GGYRCC	2 cut(s)	256, 958
BspTI	CTTAAG	1 cut(s)	1961
BsrDI	GCAATG	3 cut(s)	1134, 1156, 1305
BsrI	ACTGG	2 cut(s)	1233, 1366
BssECI	CCNNGG	6 cut(s)	168, 495, 774, 942, 962, 2150
BssHII	GCGCGC	1 cut(s)	589
BssNI	GRCGYC	3 cut(s)	257, 717, 959
BssSI	CACGAG	1 cut(s)	904
BssT1I	CCWWGG	1 cut(s)	2150
Bst2BI	CACGAG	1 cut(s)	904
Bst2UI	CCWGG	2 cut(s)	625, 1715
Bst4CI	ACNGT	5 cut(s)	742, 1103, 1997, 2120, 2359
Bst6I	CTCTTC	2 cut(s)	146, 1822
BstACI	GRCGYC	3 cut(s)	257, 717, 959
BstAFI	CTTAAG	1 cut(s)	1961
BstAPI	GCANNNNNTGC	5 cut(s)	568, 1232, 1433, 1478, 1610
BstC8I	GCNNGC	7 cut(s)	458, 591, 957, 1131, 1290, 1470, 1865
BstDEI	CTNAG	7 cut(s)	12, 833, 1062, 1251, 1682, 1791, 2462
BstDSI	CCRYGG	4 cut(s)	495, 774, 962, 2150
BstENI	CCTNNNNNAGG	1 cut(s)	622
BstFNI	CGCG	5 cut(s)	44, 497, 548, 591, 776
BstH2I	RGCGCY	2 cut(s)	260, 962
BstHHI	GCGC	6 cut(s)	259, 550, 591, 593, 781, 961
BstMAI	GTCTC	1 cut(s)	1058
BstNI	CCWGG	2 cut(s)	625, 1715
BstNSI	RCATGY	4 cut(s)	1478, 1867, 1878, 2459
BstSCI	CCNGG	6 cut(s)	167, 168, 623, 812, 855, 1713
BstSFI	CTRYAG	2 cut(s)	866, 1868
BstUI	CGCG	5 cut(s)	44, 497, 548, 591, 776
BstV1I	GCAGC	8 cut(s)	172, 562, 634, 852, 1210, 1465, 2108, 2155
BstV2I	GAAGAC	1 cut(s)	589
BstX2I	RGATCY	2 cut(s)	697, 1826
BstXI	CCANNNNNNTGG	2 cut(s)	1141, 1732
BstYI	RGATCY	2 cut(s)	697, 1826
Bsu15I	ATCGAT	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	392
BtgI	CCRYGG	4 cut(s)	495, 774, 962, 2150
BtgZI	GCGATG	1 cut(s)	2304
BtsI	GCAGTG	2 cut(s)	1487, 2382
BtsIMutI	CAGTG	6 cut(s)	987, 1226, 1427, 1487, 2333, 2382
BveI	ACCTGC	3 cut(s)	938, 1192, 1401
Cac8I	GCNNGC	7 cut(s)	458, 591, 957, 1131, 1290, 1470, 1865
CciI	TCATGA	2 cut(s)	1671, 2307
CfoI	GCGC	6 cut(s)	259, 550, 591, 593, 781, 961
Cfr13I	GGNCC	6 cut(s)	56, 171, 816, 1384, 1722, 2429
Cfr42I	CCGCGG	2 cut(s)	498, 777
Cfr9I	CCCGGG	1 cut(s)	168
ClaI	ATCGAT	1 cut(s)	392
CseI	GACGC	1 cut(s)	33
CsiI	ACCWGGT	1 cut(s)	1713
Csp6I	GTAC	2 cut(s)	202, 1565
CviQI	GTAC	2 cut(s)	202, 1565
DdeI	CTNAG	7 cut(s)	12, 833, 1062, 1251, 1682, 1791, 2462
DinI	GGCGCC	2 cut(s)	258, 960
EaeI	YGGCCR	7 cut(s)	3, 311, 458, 810, 915, 939, 1363
Eam1104I	CTCTTC	2 cut(s)	146, 1822
EarI	CTCTTC	2 cut(s)	146, 1822
EciI	GGCGGA	3 cut(s)	268, 293, 2252
Ecl136II	GAGCTC	3 cut(s)	178, 466, 615
Eco130I	CCWWGG	1 cut(s)	2150
Eco24I	GRGCYC	3 cut(s)	180, 468, 617
Eco32I	GATATC	2 cut(s)	1522, 2424
Eco47I	GGWCC	3 cut(s)	816, 1722, 2429
Eco53kI	GAGCTC	3 cut(s)	178, 466, 615
Eco57I	CTGAAG	6 cut(s)	503, 714, 897, 1467, 1931, 2357
Eco88I	CYCGRG	1 cut(s)	168
EcoICRI	GAGCTC	3 cut(s)	178, 466, 615
EcoNI	CCTNNNNNAGG	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	816
EcoRI	GAATTC	2 cut(s)	976, 2141
EcoRII	CCWGG	2 cut(s)	623, 1713
EcoRV	GATATC	2 cut(s)	1522, 2424
EcoT14I	CCWWGG	1 cut(s)	2150
EcoT38I	GRGCYC	3 cut(s)	180, 468, 617
EgeI	GGCGCC	2 cut(s)	258, 960
EheI	GGCGCC	2 cut(s)	258, 960
ErhI	CCWWGG	1 cut(s)	2150
FaqI	GGGAC	1 cut(s)	829
FbaI	TGATCA	2 cut(s)	930, 2158
FblI	GTMKAC	1 cut(s)	1373
FriOI	GRGCYC	3 cut(s)	180, 468, 617
FspBI	CTAG	5 cut(s)	1469, 1515, 2073, 2078, 2494
GlaI	GCGC	6 cut(s)	258, 549, 590, 592, 780, 960
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	1 cut(s)	5
HaeII	RGCGCY	2 cut(s)	260, 962
HapII	CCGG	9 cut(s)	169, 254, 260, 435, 461, 701, 813, 856, 1640
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	6 cut(s)	259, 550, 591, 593, 781, 961
Hin1I	GRCGYC	3 cut(s)	257, 717, 959
Hin6I	GCGC	6 cut(s)	257, 548, 589, 591, 779, 959
HinP1I	GCGC	6 cut(s)	257, 548, 589, 591, 779, 959
HincII	GTYRAC	1 cut(s)	1882
HindII	GTYRAC	1 cut(s)	1882
HpaII	CCGG	9 cut(s)	169, 254, 260, 435, 461, 701, 813, 856, 1640
HphI	GGTGA	2 cut(s)	227, 962
Hpy166II	GTNNAC	2 cut(s)	1374, 1882
Hpy188I	TCNGA	9 cut(s)	13, 157, 325, 694, 825, 1030, 1252, 2017, 2298
Hpy8I	GTNNAC	2 cut(s)	1374, 1882
Hpy99I	CGWCG	5 cut(s)	49, 638, 719, 829, 1464
HpyAV	CCTTC	1 cut(s)	1168
HpyCH4III	ACNGT	5 cut(s)	742, 1103, 1997, 2120, 2359
HpyCH4IV	ACGT	3 cut(s)	636, 717, 827
HpyF3I	CTNAG	7 cut(s)	12, 833, 1062, 1251, 1682, 1791, 2462
HpySE526I	ACGT	3 cut(s)	636, 717, 827
Hsp92I	GRCGYC	3 cut(s)	257, 717, 959
HspAI	GCGC	6 cut(s)	257, 548, 589, 591, 779, 959
KasI	GGCGCC	2 cut(s)	256, 958
KflI	GGGWCCC	1 cut(s)	816
Kpn2I	TCCGGA	2 cut(s)	700, 1639
Ksp22I	TGATCA	2 cut(s)	930, 2158
KspI	CCGCGG	2 cut(s)	498, 777
LmnI	GCTCC	5 cut(s)	24, 463, 620, 1285, 1642
Lsp1109I	GCAGC	8 cut(s)	172, 562, 634, 852, 1210, 1465, 2108, 2155
LweI	GCATC	8 cut(s)	403, 494, 1628, 1690, 1777, 2252, 2281, 2389
MabI	ACCWGGT	1 cut(s)	1713
MaeI	CTAG	5 cut(s)	1469, 1515, 2073, 2078, 2494
MaeII	ACGT	3 cut(s)	636, 717, 827
MaeIII	GTNAC	4 cut(s)	1179, 2102, 2114, 2451
MboII	GAAGA	7 cut(s)	133, 589, 707, 1222, 1809, 2150, 2294
MfeI	CAATTG	1 cut(s)	1556
MflI	RGATCY	2 cut(s)	697, 1826
MhlI	GDGCHC	3 cut(s)	180, 468, 617
MlsI	TGGCCA	3 cut(s)	313, 917, 1365
MluNI	TGGCCA	3 cut(s)	313, 917, 1365
Mly113I	GGCGCC	2 cut(s)	257, 959
MlyI	GAGTC	4 cut(s)	17, 23, 206, 257
MmeI	TCCRAC	5 cut(s)	848, 873, 1677, 1744, 1874
Mox20I	TGGCCA	3 cut(s)	313, 917, 1365
MroI	TCCGGA	2 cut(s)	700, 1639
MroXI	GAANNNNTTC	1 cut(s)	2145
MscI	TGGCCA	3 cut(s)	313, 917, 1365
MseI	TTAA	3 cut(s)	639, 654, 1962
MslI	CAYNNNNRTG	5 cut(s)	887, 1013, 1805, 2275, 2281
Msp20I	TGGCCA	3 cut(s)	313, 917, 1365
MspA1I	CMGCKG	4 cut(s)	497, 553, 776, 2222
MspCI	CTTAAG	1 cut(s)	1961
MspI	CCGG	9 cut(s)	169, 254, 260, 435, 461, 701, 813, 856, 1640
MspR9I	CCNGG	6 cut(s)	169, 170, 625, 814, 857, 1715
MunI	CAATTG	1 cut(s)	1556
Mva1269I	GAATGC	3 cut(s)	1438, 2353, 2417
MvaI	CCWGG	2 cut(s)	625, 1715
MvnI	CGCG	5 cut(s)	44, 497, 548, 591, 776
NarI	GGCGCC	2 cut(s)	257, 959
NciI	CCSGG	4 cut(s)	169, 170, 814, 857
NcoI	CCATGG	1 cut(s)	2150
NheI	GCTAGC	1 cut(s)	1468
NlaIV	GGNNCC	7 cut(s)	58, 258, 817, 818, 960, 1386, 2367
NmeAIII	GCCGAG	3 cut(s)	31, 199, 967
NmuCI	GTSAC	1 cut(s)	2451
NspI	RCATGY	4 cut(s)	1478, 1867, 1878, 2459
PaeI	GCATGC	1 cut(s)	1867
PagI	TCATGA	2 cut(s)	1671, 2307
PaqCI	CACCTGC	1 cut(s)	938
PauI	GCGCGC	1 cut(s)	589
PciI	ACATGT	1 cut(s)	1874
PcsI	WCGNNNNNNNCGW	1 cut(s)	509
PctI	GAATGC	3 cut(s)	1438, 2353, 2417
PdmI	GAANNNNTTC	1 cut(s)	2145
PfeI	GAWTC	9 cut(s)	49, 438, 500, 524, 1456, 1675, 2012, 2064, 2299
PflMI	CCANNNNNTGG	1 cut(s)	1206
PleI	GAGTC	4 cut(s)	16, 22, 206, 257
PluTI	GGCGCC	2 cut(s)	260, 962
PpsI	GAGTC	4 cut(s)	16, 22, 206, 257
PpuMI	RGGWCCY	1 cut(s)	816
PscI	ACATGT	1 cut(s)	1874
Psp124BI	GAGCTC	3 cut(s)	180, 468, 617
Psp5II	RGGWCCY	1 cut(s)	816
Psp6I	CCWGG	2 cut(s)	623, 1713
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	2 cut(s)	623, 1713
PspN4I	GGNNCC	7 cut(s)	58, 258, 817, 818, 960, 1386, 2367
PspPI	GGNCC	6 cut(s)	56, 171, 816, 1384, 1722, 2429
PspPPI	RGGWCCY	1 cut(s)	816
PstI	CTGCAG	1 cut(s)	870
PsuI	RGATCY	2 cut(s)	697, 1826
PteI	GCGCGC	1 cut(s)	589
PvuII	CAGCTG	2 cut(s)	553, 2222
RsaI	GTAC	2 cut(s)	203, 1566
RsaNI	GTAC	2 cut(s)	202, 1565
RseI	CAYNNNNRTG	5 cut(s)	887, 1013, 1805, 2275, 2281
SacI	GAGCTC	3 cut(s)	180, 468, 617
SacII	CCGCGG	2 cut(s)	498, 777
SaqAI	TTAA	3 cut(s)	639, 654, 1962
Sau96I	GGNCC	6 cut(s)	56, 171, 816, 1384, 1722, 2429
SchI	GAGTC	4 cut(s)	17, 23, 206, 257
ScrFI	CCNGG	6 cut(s)	169, 170, 625, 814, 857, 1715
SduI	GDGCHC	3 cut(s)	180, 468, 617
SexAI	ACCWGGT	1 cut(s)	1713
SfaNI	GCATC	8 cut(s)	403, 494, 1628, 1690, 1777, 2252, 2281, 2389
SfcI	CTRYAG	2 cut(s)	866, 1868
SfoI	GGCGCC	2 cut(s)	258, 960
Sfr303I	CCGCGG	2 cut(s)	498, 777
SgrBI	CCGCGG	2 cut(s)	498, 777
SinI	GGWCC	3 cut(s)	816, 1722, 2429
SmaI	CCCGGG	1 cut(s)	170
SmiMI	CAYNNNNRTG	5 cut(s)	887, 1013, 1805, 2275, 2281
SmlI	CTYRAG	3 cut(s)	32, 610, 1961
SmoI	CTYRAG	3 cut(s)	32, 610, 1961
SpeI	ACTAGT	1 cut(s)	2072
SphI	GCATGC	1 cut(s)	1867
SspDI	GGCGCC	2 cut(s)	256, 958
SspI	AATATT	1 cut(s)	2394
SspMI	CTAG	5 cut(s)	1469, 1515, 2073, 2078, 2494
SstI	GAGCTC	3 cut(s)	180, 468, 617
StyD4I	CCNGG	6 cut(s)	167, 168, 623, 812, 855, 1713
StyI	CCWWGG	1 cut(s)	2150
TaaI	ACNGT	5 cut(s)	742, 1103, 1997, 2120, 2359
TaiI	ACGT	3 cut(s)	639, 720, 830
TaqI	TCGA	4 cut(s)	47, 392, 2437, 2467
TatI	WGTACW	1 cut(s)	1564
TauI	GCSGC	8 cut(s)	434, 511, 533, 562, 776, 779, 840, 1149
TfiI	GAWTC	9 cut(s)	49, 438, 500, 524, 1456, 1675, 2012, 2064, 2299
Tru1I	TTAA	3 cut(s)	639, 654, 1962
Tru9I	TTAA	3 cut(s)	639, 654, 1962
TscAI	CASTG	6 cut(s)	987, 1233, 1434, 1494, 2340, 2389
TseFI	GTSAC	1 cut(s)	2451
TseI	GCWGC	8 cut(s)	160, 550, 647, 865, 1223, 1478, 2096, 2168
Tsp45I	GTSAC	1 cut(s)	2451
TspGWI	ACGGA	1 cut(s)	478
TspMI	CCCGGG	1 cut(s)	168
TspRI	CASTG	6 cut(s)	987, 1233, 1434, 1494, 2340, 2389
Van91I	CCANNNNNTGG	1 cut(s)	1206
Vha464I	CTTAAG	1 cut(s)	1961
VpaK11BI	GGWCC	3 cut(s)	816, 1722, 2429
XagI	CCTNNNNNAGG	1 cut(s)	622
XapI	RAATTY	5 cut(s)	976, 1245, 1496, 1775, 2141
XceI	RCATGY	4 cut(s)	1478, 1867, 1878, 2459
XcmI	CCANNNNNNNNNTGG	2 cut(s)	889, 1711
XmaI	CCCGGG	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	1373
XmnI	GAANNNNTTC	1 cut(s)	2145
XspI	CTAG	5 cut(s)	1469, 1515, 2073, 2078, 2494
ZraI	GACGTC	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.