Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004551

Physical Location & Seq

Genomic Coordinates Reverse (-)

56657097 .. 56661836

Gene Structure 4740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

ATGGCGGAGTCGACTGAGCATCAGCAACTGGCGGCCATTCTCGGTCCTGAGCCCGCCGCCACTTTCCAAACCGTAATCTCCCACTTAATCTCCTCCCCCTCCTCTTTGCAAACCCTAATCTCCGACCTCATCTCCTCCGAGAAGCGGTCCGAGGCCGAGCTCGTCTTCAACATCTGCAAGCAGGCCGATCAGGAGTCGCTTTCTCTCAAACTCGCTCAGCTTCTCCAGGTCTCTCCCGACGAGAAGACACGAACCATGTCCTCCATTCTCCTCCGGAAGCAACTACTCACCCGCGACCTGTGGCGAATACTCTCTCCTAACACCATATCCACCCTCAAACATACTCTATTATCTTGTATTCAACGCGAGGACACCCCAACATCGATTTCGAAGGCCATCTCCTACGCCGTGTCGGAGCTTGCCTCCGCAGTGTTGTTCGTCGACGGCTGGCTGGAGCTCTTGCCCTTTCTGTTCCAATCCACCTCTTACGATGCGCCGCCGAAGCTTCAGGAATGTTCCTTCTTGATTTTCGCTCAGCTCTCGTACTTCTTTACCCCGTTTAAGAAGGAATTACACACCGTCTTCTTGTACTGCTTGAGCTCCTCCACAAGGTCAGATGCAGTTAAGATAGCTGCGTTTAGTGCTGTGGTCAATTTCATTCGGTGTTTGCCCTACTCTGAAGATGAGGATAGGTTTCACGACGTCTTGATTGAAATGATGAGAACAGTGATGGGGAAATTGAACAAAGGGAAGGAGATCATGGCACAGGAAGCGATCAAGTTGTTCATTGAATTGGCCGGGACCCATCCGTCGTTGCTCAGCCGCAACGGGCAGATCATCCGGGCTATGCTGCAGATTGCTGAAGCCATAGATGTCTTGGAACAAGGGACGAGGCACTTGGCCATTGAGTTTCTGATTACTCTGGCCGAGGCCGGAGAGCGTGCACCATGGATAATGAGGAGGTGTCGGGAGTTTGTTGGTCTACTTTTTCCCATTTTAATGAGGATGGTTTCAAATGTCAAGGATGATCCCTCATGGCATACAGCTGAGACTGATGATGACATTGCCTTGGGTGTAAGTGGTGACTACTGTGTTGGGCAGGAGTGTTTGCATAGGCTTGCCATTGCCTTGGGTGGCGATAACATTGTTCCAATTGCGTTAGAACACTTTACTGCCCATTTTGCTGCACCCGAGTGGCCCAAGCATCATGCAGCATTGATTGCCCTTGCTCAAATCGCTGAGGGTTGCTCTGAGATAATGATAAAAGATTTGGAGCAGGTGGTGCCAATGGTTTTGAACTCCTTTAAACATCCACATATTCGGGTAAGGTGGTCAGCTATTAATGCAGTTGGCCAGTTGTCTACTTATTTGGCCCCAGACCTGCAAGTTCAATATCATCAACAGGTGTTTTTTGCACTGAATGCCACTATATATGGGTTGCAGAACCGTCGTCTACTGGCACATGCAGCTTCAGCACTGCGAAAATTCATTGAGAAATGTGCTAGGGATATCTTGACACCTTATTTGGATGAAGTGGTTTCCCAATTGGTTGTACTTTTGCAGAGTGAGATACAAATGGTGCAAGTAGAAGCATCGACTGCTTTGTCATCAGTTGTTGTTTCATTTCCGGAGCAATTCCAAAAATACTATGAAGATGTCATGATTCCCCTGAGAGTTATGTTGTTGGATGCCACTAATAACCCGGTTTGGTCCAAGTCCGTGGCGTGTATTAGCTTGGTTGGTATGGCTGTTGGAAAGGAGAAATTCAGGGATGATGCTAAGAAAGTCATGGAAGTGCTGATGTCTTTGCAAGGATCTCAAATGGAGCCAGATGACCTAACTACAAGTTGCATGCTACAGATATGCGCTGACCTCTGCAAGTGTCTAGGACAAGATTTCCTTCCGTACATGAGTGCTGTTATGCCTCCTTTGCTTCAGTTTGTTCAAATTAAGCCTGTTGAAACTGTTACCTCTGCAAATGACAATTGTGATATGGATGAATCTGATGATGAAAGTTTGGAAACAATTACTCATGGAGATAAAAGGATTAGAATCAAGACTAGTGTATTGGAGGAAAAAGTTACAGCTTGCAATTTGCTGTGTTGCTATGCTGATGAACTGAAGGAAGGATTCTTTCCATGGATCGATCAGGTTGCCCCAACGTTAGTTCCACTTATATTTTATATCCATGAAAATGTGAGGAAGTCTGCTGTTTCAGCAATGCTGAAGCTACTGCTTACTGCAAAGTTAGCTGTAGACAGAAGGCAAGCTGAAGGTTGTAATGAAAAGTATTTAAAGCGATTGACTGACTACATCATTGGAGCTCTGAAGTTACGTAAGGAAGATGACTCTGAAATCTGCATAAATATATTGGATGCTATAAATGAATTTATACAGGTCTGGACACACACGCGCGCACACACAGACACGCACTGGTCTGGATGCAGTCTGGATCAGAAGTGGATGTCTGCAAAGACGCAAAAGTGCGGACGCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

832

Amino Acids

93.36

Weight (kDa)

5.53

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO5	PF25780	128 - 275	1.6e-13	IPO5-like, TPR repeats
Importin_rep_4	PF18808	293 - 384	6.8e-15	Importin repeat
TOR1L1_N	PF24714	370 - 596	7.1e-06	TORTIFOLIA1 N-terminal
HEAT_EZ	PF13513	399 - 453	7.3e-07	HEAT-like repeat
TPR_IMB1	PF25574	488 - 653	7.7e-09	Importin subunit beta-1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004551)

Species	Orthologous Gene IDs
malus_domestica	MD11G1005500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0054081 RchiOBHm_Chr5g0054171 RchiOBHm_Chr5g0054201 RchiOBHm_Chr5g0054251
rosa_laevigata	RLG00000034915 RLG00000034916 RLG00000034918 RLG00000034920 RLG00000034921
rosa_multiflora	Rmu_sc0000094.1_g000006 Rmu_sc0000509.1_g000025 Rmu_sc0006889.1_g000007 Rmu_sc0010082.1_g000001 Rmu_sc0023670.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026650 Rroxscaffold_1G00026670
rosa_rugosa	Rorug05G0285300
rosa_samantha	Rh5AG354200 Rh5AG354300 Rh5AG354700 Rh5AG355200 Rh5BG366000 Rh5BG366100 Rh5BG367300 Rh5CG390800 Rh5DG055000 Rh5DG380900 Rh5DG381500
rosa_wichuraiana	Rw5G033390 Rw5G033410 Rw5G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1267
AasI	GACNNNNNNGTC	2 cut(s)	808, 1603
AatII	GACGTC	1 cut(s)	705
Acc36I	ACCTGC	2 cut(s)	1267, 1389
AccB1I	GGYRCC	1 cut(s)	1282
AccI	GTMKAC	6 cut(s)	11, 441, 982, 1361, 1453, 2256
AccII	CGCG	5 cut(s)	294, 366, 2413, 2415, 2493
AccIII	TCCGGA	2 cut(s)	273, 1627
AclI	AACGTT	1 cut(s)	2162
AclWI	GGATC	4 cut(s)	1022, 1822, 2150, 2460
AcoI	YGGCCR	5 cut(s)	33, 795, 900, 924, 1351
AcsI	RAATTY	3 cut(s)	1484, 1763, 2387
AcuI	CTGAAG	9 cut(s)	491, 699, 882, 1455, 1919, 2141, 2246, 2292, 2348
AcyI	GRCGYC	1 cut(s)	702
AfaI	GTAC	4 cut(s)	545, 590, 1554, 1907
AfiI	CCNNNNNNNGG	2 cut(s)	144, 609
AhlI	ACTAGT	1 cut(s)	2060
AjnI	CCWGG	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AleI	CACNNNNGTG	1 cut(s)	1192
Alw21I	GWGCWC	5 cut(s)	162, 459, 602, 946, 2326
Alw26I	GTCTC	2 cut(s)	235, 1043
Alw44I	GTGCAC	1 cut(s)	942
AlwI	GGATC	4 cut(s)	1022, 1822, 2150, 2460
AlwNI	CAGNNNCTG	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	1190
Aor13HI	TCCGGA	2 cut(s)	273, 1627
ApaLI	GTGCAC	1 cut(s)	942
ApeKI	GCWGC	5 cut(s)	632, 850, 1184, 1211, 1466
ApoI	RAATTY	3 cut(s)	1484, 1763, 2387
ArsI	GACNNNNNNTTYG	2 cut(s)	1507, 1539
AseI	ATTAAT	1 cut(s)	1341
AspLEI	GCGC	4 cut(s)	496, 1868, 2415, 2417
AspS9I	GGNCC	6 cut(s)	44, 147, 801, 1197, 1372, 1710
AsuC2I	CCSGG	3 cut(s)	799, 842, 1703
AsuHPI	GGTGA	2 cut(s)	280, 1094
AsuII	TTCGAA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	1190
AvaII	GGWCC	4 cut(s)	44, 147, 801, 1710
BaeGI	GKGCMC	1 cut(s)	946
BalI	TGGCCA	2 cut(s)	902, 1353
BanI	GGYRCC	1 cut(s)	1282
BanII	GRGCYC	5 cut(s)	54, 162, 459, 602, 2326
BbsI	GAAGAC	3 cut(s)	157, 251, 574
Bbv12I	GWGCWC	5 cut(s)	162, 459, 602, 946, 2326
BbvCI	CCTCAGC	1 cut(s)	1239
BbvI	GCAGC	5 cut(s)	619, 837, 1171, 1223, 1478
BccI	CCATC	4 cut(s)	404, 724, 813, 1000
BceAI	ACGGC	2 cut(s)	392, 460
BcgI	CGANNNNNNTGC	4 cut(s)	1430, 1464, 2135, 2169
BciT130I	CCWGG	1 cut(s)	227
BcnI	CCSGG	3 cut(s)	799, 842, 1703
BcoDI	GTCTC	2 cut(s)	235, 1043
BcuI	ACTAGT	1 cut(s)	2060
BfaI	CTAG	3 cut(s)	1503, 1886, 2061
BfmI	CTRYAG	3 cut(s)	851, 1856, 2253
BfuAI	ACCTGC	2 cut(s)	1267, 1389
BlpI	GCTNAGC	3 cut(s)	216, 534, 818
Bme1390I	CCNGG	4 cut(s)	227, 799, 842, 1703
Bme18I	GGWCC	4 cut(s)	44, 147, 801, 1710
BmeT110I	CYCGRG	1 cut(s)	1190
BmgT120I	GGNCC	6 cut(s)	44, 147, 801, 1197, 1372, 1710
BmiI	GGNNCC	5 cut(s)	802, 803, 1284, 1374, 1827
BmrFI	CCNGG	4 cut(s)	227, 799, 842, 1703
BmsI	GCATC	9 cut(s)	28, 481, 607, 1213, 1601, 1678, 1765, 2365, 2432
BpiI	GAAGAC	3 cut(s)	157, 251, 574
BplI	GAGNNNNNCTC	4 cut(s)	407, 439, 1232, 1264
BpmI	CTGGAG	2 cut(s)	209, 473
Bpu10I	CCTNAGC	2 cut(s)	48, 1239
Bpu1102I	GCTNAGC	3 cut(s)	216, 534, 818
Bpu14I	TTCGAA	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	616
BpuMI	CCSGG	3 cut(s)	799, 842, 1703
Bsa29I	ATCGAT	2 cut(s)	383, 2145
BsaAI	YACGTR	1 cut(s)	2336
BsaBI	GATNNNNATC	1 cut(s)	2051
BsaHI	GRCGYC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	7 cut(s)	150, 927, 947, 1068, 1128, 1719, 2138
BsaWI	WCCGGW	2 cut(s)	273, 1627
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 116, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 609
Bse1I	ACTGG	4 cut(s)	33, 1354, 1461, 2438
Bse3DI	GCAATG	3 cut(s)	1062, 1122, 2226
Bse8I	GATNNNNATC	1 cut(s)	2051
BseAI	TCCGGA	2 cut(s)	273, 1627
BseBI	CCWGG	1 cut(s)	227
BseCI	ATCGAT	2 cut(s)	383, 2145
BseDI	CCNNGG	7 cut(s)	150, 927, 947, 1068, 1128, 1719, 2138
BseJI	GATNNNNATC	1 cut(s)	2051
BseLI	CCNNNNNNNGG	2 cut(s)	144, 609
BseMI	GCAATG	3 cut(s)	1062, 1122, 2226
BseMII	CTCAG	9 cut(s)	6, 39, 230, 548, 832, 1038, 1230, 1242, 1661
BseNI	ACTGG	4 cut(s)	33, 1354, 1461, 2438
BsePI	GCGCGC	1 cut(s)	2413
BseRI	GAGGAG	6 cut(s)	82, 91, 124, 260, 592, 973
BseSI	GKGCMC	1 cut(s)	946
BseXI	GCAGC	5 cut(s)	619, 837, 1171, 1223, 1478
BsgI	GTGCAG	1 cut(s)	1170
Bsh1236I	CGCG	5 cut(s)	294, 366, 2413, 2415, 2493
BshNI	GGYRCC	1 cut(s)	1282
BshVI	ATCGAT	2 cut(s)	383, 2145
BsiHKAI	GWGCWC	5 cut(s)	162, 459, 602, 946, 2326
BsiHKCI	CYCGRG	1 cut(s)	1190
BsiSI	CCGG	6 cut(s)	274, 798, 841, 933, 1628, 1703
BslFI	GGGAC	2 cut(s)	814, 901
BslI	CCNNNNNNNGG	2 cut(s)	144, 609
BsmAI	GTCTC	2 cut(s)	235, 1043
BsmFI	GGGAC	2 cut(s)	814, 901
BsmI	GAATGC	1 cut(s)	1426
Bso31I	GGTCTC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	1190
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	6 cut(s)	54, 162, 459, 602, 946, 2326
Bsp13I	TCCGGA	2 cut(s)	273, 1627
Bsp143I	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2452
Bsp1720I	GCTNAGC	3 cut(s)	216, 534, 818
Bsp19I	CCATGG	2 cut(s)	947, 2138
BspCNI	CTCAG	9 cut(s)	7, 40, 229, 547, 831, 1039, 1231, 1243, 1662
BspDI	ATCGAT	2 cut(s)	383, 2145
BspEI	TCCGGA	2 cut(s)	273, 1627
BspFNI	CGCG	5 cut(s)	294, 366, 2413, 2415, 2493
BspHI	TCATGA	1 cut(s)	1659
BspLI	GGNNCC	5 cut(s)	802, 803, 1284, 1374, 1827
BspMAI	CTGCAG	1 cut(s)	855
BspMI	ACCTGC	2 cut(s)	1267, 1389
BspPI	GGATC	4 cut(s)	1022, 1822, 2150, 2460
BspT104I	TTCGAA	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	1282
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	3 cut(s)	1062, 1122, 2226
BsrI	ACTGG	4 cut(s)	33, 1354, 1461, 2438
BssECI	CCNNGG	7 cut(s)	150, 927, 947, 1068, 1128, 1719, 2138
BssHII	GCGCGC	1 cut(s)	2413
BssMI	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2452
BssNI	GRCGYC	1 cut(s)	702
BssT1I	CCWWGG	4 cut(s)	947, 1068, 1128, 2138
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	6 cut(s)	73, 580, 727, 1091, 1448, 1966
BstACI	GRCGYC	1 cut(s)	702
BstAPI	GCANNNNNTGC	4 cut(s)	1220, 1282, 1421, 1598
BstBAI	YACGTR	1 cut(s)	2336
BstBI	TTCGAA	1 cut(s)	389
BstDSI	CCRYGG	3 cut(s)	947, 1719, 2138
BstENI	CCTNNNNNAGG	1 cut(s)	607
BstFNI	CGCG	5 cut(s)	294, 366, 2413, 2415, 2493
BstHHI	GCGC	4 cut(s)	496, 1868, 2415, 2417
BstKTI	GATC	9 cut(s)	190, 759, 777, 837, 1030, 1817, 2145, 2149, 2455
BstMAI	GTCTC	2 cut(s)	235, 1043
BstMBI	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2452
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	2 cut(s)	1466, 1855
BstSCI	CCNGG	4 cut(s)	225, 797, 840, 1701
BstSFI	CTRYAG	3 cut(s)	851, 1856, 2253
BstSLI	GKGCMC	1 cut(s)	946
BstSNI	TACGTA	1 cut(s)	2336
BstUI	CGCG	5 cut(s)	294, 366, 2413, 2415, 2493
BstV1I	GCAGC	5 cut(s)	619, 837, 1171, 1223, 1478
BstV2I	GAAGAC	3 cut(s)	157, 251, 574
BstX2I	RGATCY	1 cut(s)	1814
BstXI	CCANNNNNNTGG	2 cut(s)	1129, 1720
BstYI	RGATCY	1 cut(s)	1814
Bsu15I	ATCGAT	2 cut(s)	383, 2145
BsuTUI	ATCGAT	2 cut(s)	383, 2145
BtgI	CCRYGG	3 cut(s)	947, 1719, 2138
BtsI	GCAGTG	2 cut(s)	435, 1475
BtsIMutI	CAGTG	5 cut(s)	435, 732, 1415, 1475, 2431
BveI	ACCTGC	2 cut(s)	1267, 1389
CaiI	CAGNNNCTG	1 cut(s)	28
CciI	TCATGA	1 cut(s)	1659
CfoI	GCGC	4 cut(s)	496, 1868, 2415, 2417
Cfr13I	GGNCC	6 cut(s)	44, 147, 801, 1197, 1372, 1710
ClaI	ATCGAT	2 cut(s)	383, 2145
CpoI	CGGWCCG	1 cut(s)	147
CseI	GACGC	1 cut(s)	2485
Csp6I	GTAC	4 cut(s)	544, 589, 1553, 1906
CspI	CGGWCCG	1 cut(s)	147
CviQI	GTAC	4 cut(s)	544, 589, 1553, 1906
DpnI	GATC	9 cut(s)	189, 758, 776, 836, 1029, 1816, 2144, 2148, 2454
DpnII	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2452
DraI	TTTAAA	2 cut(s)	1306, 2295
DrdI	GACNNNNNNGTC	2 cut(s)	808, 1603
DseDI	GACNNNNNNGTC	2 cut(s)	808, 1603
EaeI	YGGCCR	5 cut(s)	33, 795, 900, 924, 1351
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	4 cut(s)	160, 457, 600, 2324
Eco105I	TACGTA	1 cut(s)	2336
Eco130I	CCWWGG	4 cut(s)	947, 1068, 1128, 2138
Eco24I	GRGCYC	5 cut(s)	54, 162, 459, 602, 2326
Eco31I	GGTCTC	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	1510
Eco47I	GGWCC	4 cut(s)	44, 147, 801, 1710
Eco53kI	GAGCTC	4 cut(s)	160, 457, 600, 2324
Eco57I	CTGAAG	9 cut(s)	491, 699, 882, 1455, 1919, 2141, 2246, 2292, 2348
Eco88I	CYCGRG	1 cut(s)	1190
EcoICRI	GAGCTC	4 cut(s)	160, 457, 600, 2324
EcoNI	CCTNNNNNAGG	1 cut(s)	607
EcoO109I	RGGNCCY	1 cut(s)	801
EcoRII	CCWGG	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	1510
EcoT14I	CCWWGG	4 cut(s)	947, 1068, 1128, 2138
EcoT38I	GRGCYC	5 cut(s)	54, 162, 459, 602, 2326
ErhI	CCWWGG	4 cut(s)	947, 1068, 1128, 2138
FalI	AAGNNNNNCTT	2 cut(s)	1884, 1916
FaqI	GGGAC	2 cut(s)	814, 901
FauI	CCCGC	2 cut(s)	61, 299
FblI	GTMKAC	6 cut(s)	11, 441, 982, 1361, 1453, 2256
FriOI	GRGCYC	5 cut(s)	54, 162, 459, 602, 2326
FspBI	CTAG	3 cut(s)	1503, 1886, 2061
GlaI	GCGC	4 cut(s)	495, 1867, 2414, 2416
GsuI	CTGGAG	2 cut(s)	209, 473
HapII	CCGG	6 cut(s)	274, 798, 841, 933, 1628, 1703
HgaI	GACGC	1 cut(s)	2485
HhaI	GCGC	4 cut(s)	496, 1868, 2415, 2417
Hin1I	GRCGYC	1 cut(s)	702
Hin6I	GCGC	4 cut(s)	494, 1866, 2413, 2415
HinP1I	GCGC	4 cut(s)	494, 1866, 2413, 2415
HincII	GTYRAC	2 cut(s)	12, 442
HindII	GTYRAC	2 cut(s)	12, 442
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	7 cut(s)	8, 194, 1663, 2000, 2052, 2130, 2348
HpaII	CCGG	6 cut(s)	274, 798, 841, 933, 1628, 1703
HphI	GGTGA	2 cut(s)	280, 1094
Hpy166II	GTNNAC	7 cut(s)	12, 442, 944, 983, 1362, 1454, 2257
Hpy8I	GTNNAC	7 cut(s)	12, 442, 944, 983, 1362, 1454, 2257
Hpy99I	CGWCG	6 cut(s)	242, 443, 446, 704, 814, 1452
HpyAV	CCTTC	9 cut(s)	385, 529, 559, 745, 1910, 2116, 2120, 2256, 2267
HpyCH4III	ACNGT	6 cut(s)	73, 580, 727, 1091, 1448, 1966
HpyCH4IV	ACGT	3 cut(s)	702, 2162, 2335
HpySE526I	ACGT	3 cut(s)	702, 2162, 2335
Hsp92I	GRCGYC	1 cut(s)	702
HspAI	GCGC	4 cut(s)	494, 1866, 2413, 2415
KflI	GGGWCCC	1 cut(s)	801
Kpn2I	TCCGGA	2 cut(s)	273, 1627
Kzo9I	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2452
LmnI	GCTCC	7 cut(s)	415, 454, 605, 1273, 1630, 1825, 2321
Lsp1109I	GCAGC	5 cut(s)	619, 837, 1171, 1223, 1478
LweI	GCATC	9 cut(s)	28, 481, 607, 1213, 1601, 1678, 1765, 2365, 2432
MaeI	CTAG	3 cut(s)	1503, 1886, 2061
MaeII	ACGT	3 cut(s)	702, 2162, 2335
MaeIII	GTNAC	4 cut(s)	1082, 1966, 2080, 2331
MalI	GATC	9 cut(s)	189, 758, 776, 836, 1029, 1816, 2144, 2148, 2454
MboI	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2452
MboII	GAAGA	6 cut(s)	157, 256, 574, 692, 1664, 2354
MfeI	CAATTG	3 cut(s)	1152, 1544, 1984
MflI	RGATCY	1 cut(s)	1814
MhlI	GDGCHC	6 cut(s)	54, 162, 459, 602, 946, 2326
MlsI	TGGCCA	2 cut(s)	902, 1353
MluNI	TGGCCA	2 cut(s)	902, 1353
MlyI	GAGTC	3 cut(s)	17, 203, 2342
MmeI	TCCRAC	4 cut(s)	147, 393, 1665, 1732
Mox20I	TGGCCA	2 cut(s)	902, 1353
MroI	TCCGGA	2 cut(s)	273, 1627
MscI	TGGCCA	2 cut(s)	902, 1353
MseI	TTAA	8 cut(s)	86, 561, 624, 998, 1305, 1341, 1950, 2294
MslI	CAYNNNNRTG	4 cut(s)	998, 1192, 1793, 2193
Msp20I	TGGCCA	2 cut(s)	902, 1353
MspA1I	CMGCKG	1 cut(s)	1046
MspI	CCGG	6 cut(s)	274, 798, 841, 933, 1628, 1703
MspR9I	CCNGG	4 cut(s)	227, 799, 842, 1703
MunI	CAATTG	3 cut(s)	1152, 1544, 1984
Mva1269I	GAATGC	1 cut(s)	1426
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	5 cut(s)	294, 366, 2413, 2415, 2493
NciI	CCSGG	3 cut(s)	799, 842, 1703
NcoI	CCATGG	2 cut(s)	947, 2138
NdeII	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2452
NlaIV	GGNNCC	5 cut(s)	802, 803, 1284, 1374, 1827
NmeAIII	GCCGAG	2 cut(s)	181, 952
NmuCI	GTSAC	1 cut(s)	1082
NspI	RCATGY	2 cut(s)	1466, 1855
NspV	TTCGAA	1 cut(s)	389
OliI	CACNNNNGTG	1 cut(s)	1192
PaeI	GCATGC	1 cut(s)	1855
PagI	TCATGA	1 cut(s)	1659
PaqCI	CACCTGC	1 cut(s)	1267
PauI	GCGCGC	1 cut(s)	2413
PctI	GAATGC	1 cut(s)	1426
PfeI	GAWTC	4 cut(s)	1663, 2000, 2052, 2130
PleI	GAGTC	3 cut(s)	16, 202, 2342
PpsI	GAGTC	3 cut(s)	16, 202, 2342
Ppu21I	YACGTR	1 cut(s)	2336
PpuMI	RGGWCCY	1 cut(s)	801
PshBI	ATTAAT	1 cut(s)	1341
Psp124BI	GAGCTC	4 cut(s)	162, 459, 602, 2326
Psp1406I	AACGTT	1 cut(s)	2162
Psp5II	RGGWCCY	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	5 cut(s)	802, 803, 1284, 1374, 1827
PspPI	GGNCC	6 cut(s)	44, 147, 801, 1197, 1372, 1710
PspPPI	RGGWCCY	1 cut(s)	801
PstI	CTGCAG	1 cut(s)	855
PstNI	CAGNNNCTG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	1814
PteI	GCGCGC	1 cut(s)	2413
PvuII	CAGCTG	1 cut(s)	1046
RsaI	GTAC	4 cut(s)	545, 590, 1554, 1907
RsaNI	GTAC	4 cut(s)	544, 589, 1553, 1906
RseI	CAYNNNNRTG	4 cut(s)	998, 1192, 1793, 2193
Rsr2I	CGGWCCG	1 cut(s)	147
RsrII	CGGWCCG	1 cut(s)	147
SacI	GAGCTC	4 cut(s)	162, 459, 602, 2326
SalI	GTCGAC	2 cut(s)	10, 440
SaqAI	TTAA	8 cut(s)	86, 561, 624, 998, 1305, 1341, 1950, 2294
Sau3AI	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2452
Sau96I	GGNCC	6 cut(s)	44, 147, 801, 1197, 1372, 1710
SchI	GAGTC	3 cut(s)	17, 203, 2342
ScrFI	CCNGG	4 cut(s)	227, 799, 842, 1703
SduI	GDGCHC	6 cut(s)	54, 162, 459, 602, 946, 2326
SfaNI	GCATC	9 cut(s)	28, 481, 607, 1213, 1601, 1678, 1765, 2365, 2432
SfcI	CTRYAG	3 cut(s)	851, 1856, 2253
SfuI	TTCGAA	1 cut(s)	389
SgrDI	CGTCGACG	1 cut(s)	440
SinI	GGWCC	4 cut(s)	44, 147, 801, 1710
SmiMI	CAYNNNNRTG	4 cut(s)	998, 1192, 1793, 2193
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
SnaBI	TACGTA	1 cut(s)	2336
SpeI	ACTAGT	1 cut(s)	2060
SphI	GCATGC	1 cut(s)	1855
SspMI	CTAG	3 cut(s)	1503, 1886, 2061
SstI	GAGCTC	4 cut(s)	162, 459, 602, 2326
StyD4I	CCNGG	4 cut(s)	225, 797, 840, 1701
StyI	CCWWGG	4 cut(s)	947, 1068, 1128, 2138
TaaI	ACNGT	6 cut(s)	73, 580, 727, 1091, 1448, 1966
TaiI	ACGT	3 cut(s)	705, 2165, 2338
TaqI	TCGA	6 cut(s)	11, 383, 389, 441, 1595, 2145
TaqII	GACCGA	1 cut(s)	32
TatI	WGTACW	2 cut(s)	588, 1552
TauI	GCSGC	5 cut(s)	35, 59, 499, 825, 2496
TfiI	GAWTC	4 cut(s)	1663, 2000, 2052, 2130
Tru1I	TTAA	8 cut(s)	86, 561, 624, 998, 1305, 1341, 1950, 2294
Tru9I	TTAA	8 cut(s)	86, 561, 624, 998, 1305, 1341, 1950, 2294
TscAI	CASTG	5 cut(s)	435, 732, 1422, 1482, 2438
TseFI	GTSAC	1 cut(s)	1082
TseI	GCWGC	5 cut(s)	632, 850, 1184, 1211, 1466
Tsp45I	GTSAC	1 cut(s)	1082
TspGWI	ACGGA	3 cut(s)	798, 1708, 1893
TspRI	CASTG	5 cut(s)	435, 732, 1422, 1482, 2438
VneI	GTGCAC	1 cut(s)	942
VpaK11BI	GGWCC	4 cut(s)	44, 147, 801, 1710
VspI	ATTAAT	1 cut(s)	1341
XagI	CCTNNNNNAGG	1 cut(s)	607
XapI	RAATTY	3 cut(s)	1484, 1763, 2387
XceI	RCATGY	2 cut(s)	1466, 1855
XcmI	CCANNNNNNNNNTGG	1 cut(s)	874
XmiI	GTMKAC	6 cut(s)	11, 441, 982, 1361, 1453, 2256
XspI	CTAG	3 cut(s)	1503, 1886, 2061
ZraI	GACGTC	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.