Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004551

Physical Location & Seq

Genomic Coordinates Reverse (-)

57424061 .. 57430916

Gene Structure 6856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG366100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATCAAACCTTATCAAGAGGCACATGCTGCTTCAGCACTGCAAAAATTCATTGAGAAATGTGCTAGGGATATGTTGACACCTTATTTGGATGAAGTGGTTTCCCAATTGGTTGTACTTTTGCAGGACCAATTCCAAAAATACTATGAAGATGTCATGATTCCCCTGAGAGTTATGTTGTTGGATGCCACTAATAACCCGGTTTGGTCCAAGTCCGTGGAGTGTATTAACCTGGTTGGTATGGCTGTTGGAAAGGAGAAATTCAGGGATGATGCTAAGAAAGTCATGGAAGTGCTGATGTCTTTTCAAGGATCTCAAATGGAGCTAGATGACCCAACTGCAAGTTGCATGCTACAGATATGCGCTGACCTCTGCAAGTGTCTAGGACAAGATTTCCTTCCGTACATGGGTGCTGTTATGCCTCTTTTGCTTCAGTTTGTTCAAATTAAGCCTGTTGAAACCGTTACCTCCGCAAATGACAATAGTGATATGGATGAATCTGATGATGAAAGGATTCAATTTCTGCAAGAACCTGATAGAGAAATCACTGCAATAATATTGGATGCTTTAAATGAATGCATACAGATATCTGGACCATTTCGAGATGAAGCCATGTCACATGTACCTAGTCGAGGTGATAAAGCAGGGATCAGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

219

Amino Acids

24.61

Weight (kDa)

4.41

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IMB1	PF25574	33 - 152	1.7e-06	Importin subunit beta-1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004551)

Species	Orthologous Gene IDs
malus_domestica	MD11G1005500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0054081 RchiOBHm_Chr5g0054171 RchiOBHm_Chr5g0054201 RchiOBHm_Chr5g0054251
rosa_laevigata	RLG00000034915 RLG00000034916 RLG00000034918 RLG00000034920 RLG00000034921
rosa_multiflora	Rmu_sc0000094.1_g000006 Rmu_sc0000509.1_g000025 Rmu_sc0006889.1_g000007 Rmu_sc0010082.1_g000001 Rmu_sc0023670.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026650 Rroxscaffold_1G00026670
rosa_rugosa	Rorug05G0285300
rosa_samantha	Rh5AG354200 Rh5AG354300 Rh5AG354700 Rh5AG355200 Rh5BG366000 Rh5BG366100 Rh5BG367300 Rh5CG390800 Rh5DG055000 Rh5DG380900 Rh5DG381500
rosa_wichuraiana	Rw5G033390 Rw5G033410 Rw5G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	471
AclWI	GGATC	2 cut(s)	319, 656
AcsI	RAATTY	2 cut(s)	47, 260
AcuI	CTGAAG	2 cut(s)	18, 416
AfaI	GTAC	3 cut(s)	117, 404, 624
AfiI	CCNNNNNNNGG	2 cut(s)	407, 632
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	4 cut(s)	308, 443, 458, 518
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
AlwI	GGATC	2 cut(s)	319, 656
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	47, 260
ArsI	GACNNNNNNTTYG	2 cut(s)	70, 102
Asp700I	GAANNNNTTC	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	3 cut(s)	127, 207, 593
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	647
AvaII	GGWCC	3 cut(s)	127, 207, 593
BbvI	GCAGC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	4 cut(s)	66, 326, 383, 627
BfmI	CTRYAG	1 cut(s)	353
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	200, 233
Bme18I	GGWCC	3 cut(s)	127, 207, 593
BmgT120I	GGNCC	3 cut(s)	127, 207, 593
BmrFI	CCNGG	2 cut(s)	200, 233
BmsI	GCATC	3 cut(s)	175, 262, 553
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 632
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	5 cut(s)	97, 190, 274, 499, 568
BseLI	CCNNNNNNNGG	2 cut(s)	407, 632
BseMII	CTCAG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	2 cut(s)	407, 632
BsmFI	GGGAC	1 cut(s)	639
BsmI	GAATGC	1 cut(s)	581
Bsp143I	GATC	3 cut(s)	3, 311, 648
BspACI	CCGC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	156
BspPI	GGATC	2 cut(s)	319, 656
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	3, 311, 648
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	463
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	167, 276
BstDSI	CCRYGG	1 cut(s)	216
BstENI	CCTNNNNNAGG	1 cut(s)	630
BstF5I	GGATG	5 cut(s)	97, 190, 274, 499, 568
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	3 cut(s)	6, 314, 651
BstMBI	GATC	3 cut(s)	3, 311, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 35, 427
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	3 cut(s)	29, 352, 623
BstSCI	CCNGG	2 cut(s)	198, 231
BstSFI	CTRYAG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	5 cut(s)	97, 190, 274, 499, 568
BtsI	GCAGTG	2 cut(s)	38, 546
BtsIMutI	CAGTG	2 cut(s)	38, 546
Cac8I	GCNNGC	1 cut(s)	350
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	127, 207, 593
CsiI	ACCWGGT	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	116, 403, 623
CviAII	CATG	7 cut(s)	26, 157, 286, 349, 406, 613, 620
CviJI	RGCY	4 cut(s)	245, 325, 451, 611
CviKI_1	RGCY	4 cut(s)	245, 325, 451, 611
CviQI	GTAC	3 cut(s)	116, 403, 623
DdeI	CTNAG	2 cut(s)	167, 276
DpnI	GATC	3 cut(s)	5, 313, 650
DpnII	GATC	3 cut(s)	3, 311, 648
DraI	TTTAAA	1 cut(s)	570
Eco32I	GATATC	1 cut(s)	588
Eco47I	GGWCC	3 cut(s)	127, 207, 593
Eco57I	CTGAAG	2 cut(s)	18, 416
EcoNI	CCTNNNNNAGG	1 cut(s)	630
EcoRII	CCWGG	1 cut(s)	231
EcoRV	GATATC	1 cut(s)	588
EcoT22I	ATGCAT	1 cut(s)	581
FaeI	CATG	7 cut(s)	29, 160, 289, 352, 409, 616, 623
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	7 cut(s)	25, 156, 285, 348, 405, 612, 619
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	5 cut(s)	104, 197, 281, 506, 575
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	4 cut(s)	66, 326, 383, 627
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	1 cut(s)	30
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	1 cut(s)	365
Hin1II	CATG	7 cut(s)	29, 160, 289, 352, 409, 616, 623
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	3 cut(s)	160, 497, 514
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	4 cut(s)	17, 157, 591, 602
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4V	TGCA	8 cut(s)	43, 124, 341, 348, 375, 526, 551, 579
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 35, 427
HpyF3I	CTNAG	2 cut(s)	167, 276
Hsp92II	CATG	7 cut(s)	29, 160, 289, 352, 409, 616, 623
HspAI	GCGC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 311, 648
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	3 cut(s)	175, 262, 553
MabI	ACCWGGT	1 cut(s)	231
MaeI	CTAG	4 cut(s)	66, 326, 383, 627
MaeIII	GTNAC	2 cut(s)	463, 615
MalI	GATC	3 cut(s)	5, 313, 650
MboI	GATC	3 cut(s)	3, 311, 648
MboII	GAAGA	1 cut(s)	161
MfeI	CAATTG	1 cut(s)	107
MflI	RGATCY	1 cut(s)	311
MluCI	AATT	6 cut(s)	47, 107, 131, 260, 444, 518
MmeI	TCCRAC	2 cut(s)	162, 229
MnlI	CCTC	5 cut(s)	13, 380, 432, 478, 626
Mph1103I	ATGCAT	1 cut(s)	581
MroXI	GAANNNNTTC	1 cut(s)	513
MseI	TTAA	3 cut(s)	228, 447, 569
MslI	CAYNNNNRTG	1 cut(s)	290
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	200, 233
MunI	CAATTG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	29, 35, 427
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	3 cut(s)	3, 311, 648
NlaIII	CATG	7 cut(s)	29, 160, 289, 352, 409, 616, 623
NmuCI	GTSAC	1 cut(s)	615
NsiI	ATGCAT	1 cut(s)	581
NspI	RCATGY	3 cut(s)	29, 352, 623
PaeI	GCATGC	1 cut(s)	352
PagI	TCATGA	1 cut(s)	156
PciI	ACATGT	1 cut(s)	619
PctI	GAATGC	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	3 cut(s)	160, 497, 514
PkrI	GCNGC	1 cut(s)	31
PscI	ACATGT	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspPI	GGNCC	3 cut(s)	127, 207, 593
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	3 cut(s)	117, 404, 624
RsaNI	GTAC	3 cut(s)	116, 403, 623
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	3 cut(s)	228, 447, 569
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	3 cut(s)	3, 311, 648
Sau96I	GGNCC	3 cut(s)	127, 207, 593
ScrFI	CCNGG	2 cut(s)	200, 233
SetI	ASST	9 cut(s)	13, 85, 234, 327, 372, 470, 535, 628, 637
SexAI	ACCWGGT	1 cut(s)	231
SfaNI	GCATC	3 cut(s)	175, 262, 553
SfcI	CTRYAG	1 cut(s)	353
SinI	GGWCC	3 cut(s)	127, 207, 593
SmiMI	CAYNNNNRTG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	352
Sse9I	AATT	6 cut(s)	47, 107, 131, 260, 444, 518
SsiI	CCGC	1 cut(s)	471
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	4 cut(s)	66, 326, 383, 627
StyD4I	CCNGG	2 cut(s)	198, 231
TaaI	ACNGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	601, 631
TasI	AATT	6 cut(s)	47, 107, 131, 260, 444, 518
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	3 cut(s)	160, 497, 514
Tru1I	TTAA	3 cut(s)	228, 447, 569
Tru9I	TTAA	3 cut(s)	228, 447, 569
TscAI	CASTG	2 cut(s)	45, 553
TseFI	GTSAC	1 cut(s)	615
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	615
TspDTI	ATGAA	7 cut(s)	40, 108, 162, 510, 522, 588, 621
TspGWI	ACGGA	2 cut(s)	205, 390
TspRI	CASTG	2 cut(s)	45, 553
VpaK11BI	GGWCC	3 cut(s)	127, 207, 593
XagI	CCTNNNNNAGG	1 cut(s)	630
XapI	RAATTY	2 cut(s)	47, 260
XceI	RCATGY	3 cut(s)	29, 352, 623
XmnI	GAANNNNTTC	1 cut(s)	513
XspI	CTAG	4 cut(s)	66, 326, 383, 627
Zsp2I	ATGCAT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.