Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010082.1

Orthogroup ID

OG0004551

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2432

Gene Structure 2432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010082.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

gcacatgctgcttcagcactgcaaaaattcattgagaaatgtgctagggatatcttgacaccttatttggatgaagtgttttcccaattggttgtacttttgcagagtgagatacaaatggtgcatgtagaagcattgactgctttggcatcagttgttgtttcatttccggaccaattccaaaaatactatgaagatgtcatgattcccctgagagttatgttgttggatgccactaataacccggtttggtccaagtccgtggagtgtattagcctggttggtatggctgttggaaaggagaaattcagggatgatgctaagaaagtcatggaagtgctgatgtcttttcaaggatctcaaatggagctagatgacccaactgcaagttgcatgctacagatatgcgctgacctgtgcaagtgtctaggacaagatttccttccttacatgggtgctgttatgcctcctttgcttcagtttgttcaaattaagcctgttgaaactgttacctccgcaaatgacaatagtgatatggatgaatctgatgatgaaagtatggaaacaattactcttggagataaaaggattagaatcaagactagtgtattggaggaaaaagttacagcttgcaatttgctgtgttgctatgctgatgaactgaaggaaggattctttccatggatcgatcgggttgctccaacgttagttccacttatatcttatatccatgaaaaagtgaggaagtctgctgtttcagcaatgccgaagctactgctttctgcaaagttagctatagagaaaagacaagcccaaggatgtaatgaaacctatataaagaaattgtctgaccacatccttccagctctggtggaagcatcacatcaggaaactgatagagaaatcactgcaataatattggatgctttaaatgaatgcatacagatatctggaccacttcgagatgaagccatgtcacaggcacttagtcgaggtgataaagcagggatcactccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

339

Amino Acids

37.64

Weight (kDa)

4.8

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004551)

Species	Orthologous Gene IDs
malus_domestica	MD11G1005500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0054081 RchiOBHm_Chr5g0054171 RchiOBHm_Chr5g0054201 RchiOBHm_Chr5g0054251
rosa_laevigata	RLG00000034915 RLG00000034916 RLG00000034918 RLG00000034920 RLG00000034921
rosa_multiflora	Rmu_sc0000094.1_g000006 Rmu_sc0000509.1_g000025 Rmu_sc0006889.1_g000007 Rmu_sc0010082.1_g000001 Rmu_sc0023670.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026650 Rroxscaffold_1G00026670
rosa_rugosa	Rorug05G0285300
rosa_samantha	Rh5AG354200 Rh5AG354300 Rh5AG354700 Rh5AG355200 Rh5BG366000 Rh5BG366100 Rh5BG367300 Rh5CG390800 Rh5DG055000 Rh5DG380900 Rh5DG381500
rosa_wichuraiana	Rw5G033390 Rw5G033410 Rw5G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	1 cut(s)	516
AclI	AACGTT	1 cut(s)	704
AclWI	GGATC	3 cut(s)	364, 692, 1016
AcsI	RAATTY	2 cut(s)	26, 305
AcuI	CTGAAG	2 cut(s)	461, 683
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	452
AgsI	TTSAA	3 cut(s)	353, 488, 503
AhlI	ACTAGT	1 cut(s)	602
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	5 cut(s)	370, 629, 772, 794, 866
AluI	AGCT	5 cut(s)	370, 629, 772, 794, 866
AlwI	GGATC	3 cut(s)	364, 692, 1016
Aor13HI	TCCGGA	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	2 cut(s)	26, 305
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	3 cut(s)	172, 252, 953
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	1007
AvaII	GGWCC	3 cut(s)	172, 252, 953
BcgI	CGANNNNNNTGC	4 cut(s)	677, 711, 757, 791
BciT130I	CCWGG	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	245
BcuI	ACTAGT	1 cut(s)	602
BfaI	CTAG	4 cut(s)	45, 371, 428, 603
BfmI	CTRYAG	2 cut(s)	398, 795
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	245, 278
Bme18I	GGWCC	3 cut(s)	172, 252, 953
BmgT120I	GGNCC	3 cut(s)	172, 252, 953
BmrFI	CCNGG	2 cut(s)	245, 278
BmsI	GCATC	5 cut(s)	158, 220, 307, 887, 913
BpuMI	CCSGG	1 cut(s)	245
Bsa29I	ATCGAT	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	261, 680, 814
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse3DI	GCAATG	1 cut(s)	768
Bse8I	GATNNNNATC	1 cut(s)	593
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	278
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	3 cut(s)	261, 680, 814
BseGI	GGATG	7 cut(s)	76, 235, 319, 544, 824, 855, 928
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	691
BshVI	ATCGAT	1 cut(s)	687
BsiEI	CGRYCG	1 cut(s)	691
BsiSI	CCGG	2 cut(s)	170, 245
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	941
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	356, 684, 688, 1008
Bsp19I	CCATGG	1 cut(s)	680
BspACI	CCGC	1 cut(s)	516
BspCNI	CTCAG	1 cut(s)	204
BspDI	ATCGAT	1 cut(s)	687
BspEI	TCCGGA	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	201
BspPI	GGATC	3 cut(s)	364, 692, 1016
BsrDI	GCAATG	1 cut(s)	768
BssECI	CCNNGG	3 cut(s)	261, 680, 814
BssMI	GATC	4 cut(s)	356, 684, 688, 1008
BssT1I	CCWWGG	2 cut(s)	680, 814
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	508
BstAPI	GCANNNNNTGC	2 cut(s)	8, 140
BstC8I	GCNNGC	2 cut(s)	395, 631
BstDEI	CTNAG	3 cut(s)	212, 321, 986
BstDSI	CCRYGG	2 cut(s)	261, 680
BstF5I	GGATG	7 cut(s)	76, 235, 319, 544, 824, 855, 928
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	4 cut(s)	359, 687, 691, 1011
BstMBI	GATC	4 cut(s)	356, 684, 688, 1008
BstMCI	CGRYCG	1 cut(s)	691
BstMWI	GCNNNNNNNGC	6 cut(s)	8, 14, 140, 472, 758, 791
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	3 cut(s)	8, 128, 397
BstSCI	CCNGG	2 cut(s)	243, 276
BstSFI	CTRYAG	2 cut(s)	398, 795
BstX2I	RGATCY	1 cut(s)	356
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	687
BsuTUI	ATCGAT	1 cut(s)	687
BtgI	CCRYGG	2 cut(s)	261, 680
BtsCI	GGATG	7 cut(s)	76, 235, 319, 544, 824, 855, 928
BtsI	GCAGTG	2 cut(s)	17, 906
BtsIMutI	CAGTG	2 cut(s)	17, 906
Cac8I	GCNNGC	2 cut(s)	395, 631
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	410
Cfr13I	GGNCC	3 cut(s)	172, 252, 953
ClaI	ATCGAT	1 cut(s)	687
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	9 cut(s)	5, 125, 202, 331, 394, 451, 681, 731, 973
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	3 cut(s)	212, 321, 986
DpnI	GATC	4 cut(s)	358, 686, 690, 1010
DpnII	GATC	4 cut(s)	356, 684, 688, 1008
DraI	TTTAAA	1 cut(s)	930
Eco130I	CCWWGG	2 cut(s)	680, 814
Eco32I	GATATC	2 cut(s)	52, 948
Eco47I	GGWCC	3 cut(s)	172, 252, 953
Eco57I	CTGAAG	2 cut(s)	461, 683
EcoRII	CCWGG	1 cut(s)	276
EcoRV	GATATC	2 cut(s)	52, 948
EcoT14I	CCWWGG	2 cut(s)	680, 814
EcoT22I	ATGCAT	1 cut(s)	941
ErhI	CCWWGG	2 cut(s)	680, 814
FaeI	CATG	9 cut(s)	8, 128, 205, 334, 397, 454, 684, 734, 976
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	9 cut(s)	4, 124, 201, 330, 393, 450, 680, 730, 972
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	7 cut(s)	83, 242, 326, 551, 831, 842, 935
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	4 cut(s)	45, 371, 428, 603
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	1 cut(s)	9
HapII	CCGG	2 cut(s)	170, 245
HhaI	GCGC	1 cut(s)	410
Hin1II	CATG	9 cut(s)	8, 128, 205, 334, 397, 454, 684, 734, 976
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HinfI	GANTC	4 cut(s)	205, 542, 594, 672
HpaII	CCGG	2 cut(s)	170, 245
HphI	GGTGA	1 cut(s)	1007
Hpy188I	TCNGA	2 cut(s)	547, 850
Hpy188III	TCNNGA	7 cut(s)	55, 170, 202, 598, 887, 951, 962
HpyAV	CCTTC	4 cut(s)	452, 658, 662, 869
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	1 cut(s)	704
HpyF10VI	GCNNNNNNNGC	6 cut(s)	8, 14, 140, 472, 758, 791
HpyF3I	CTNAG	3 cut(s)	212, 321, 986
HpySE526I	ACGT	1 cut(s)	704
Hsp92II	CATG	9 cut(s)	8, 128, 205, 334, 397, 454, 684, 734, 976
HspAI	GCGC	1 cut(s)	408
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	356, 684, 688, 1008
LmnI	GCTCC	2 cut(s)	367, 703
LweI	GCATC	5 cut(s)	158, 220, 307, 887, 913
MaeI	CTAG	4 cut(s)	45, 371, 428, 603
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	3 cut(s)	508, 622, 975
MalI	GATC	4 cut(s)	358, 686, 690, 1010
MboI	GATC	4 cut(s)	356, 684, 688, 1008
MboII	GAAGA	1 cut(s)	206
MfeI	CAATTG	1 cut(s)	86
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	8 cut(s)	26, 86, 176, 305, 489, 567, 634, 842
MmeI	TCCRAC	3 cut(s)	207, 274, 725
MnlI	CCTC	5 cut(s)	477, 523, 607, 735, 986
Mph1103I	ATGCAT	1 cut(s)	941
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	2 cut(s)	492, 929
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	2 cut(s)	170, 245
MspR9I	CCNGG	2 cut(s)	245, 278
MunI	CAATTG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	941
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	6 cut(s)	8, 14, 140, 472, 758, 791
NciI	CCSGG	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	680
NdeII	GATC	4 cut(s)	356, 684, 688, 1008
NlaIII	CATG	9 cut(s)	8, 128, 205, 334, 397, 454, 684, 734, 976
NmuCI	GTSAC	1 cut(s)	975
NsiI	ATGCAT	1 cut(s)	941
NspI	RCATGY	3 cut(s)	8, 128, 397
PaeI	GCATGC	1 cut(s)	397
PagI	TCATGA	1 cut(s)	201
PctI	GAATGC	1 cut(s)	941
PfeI	GAWTC	4 cut(s)	205, 542, 594, 672
PkrI	GCNGC	1 cut(s)	10
Ple19I	CGATCG	1 cut(s)	691
Psp1406I	AACGTT	1 cut(s)	704
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	3 cut(s)	172, 252, 953
PsuI	RGATCY	1 cut(s)	356
PvuI	CGATCG	1 cut(s)	691
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	492, 929
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	4 cut(s)	356, 684, 688, 1008
Sau96I	GGNCC	3 cut(s)	172, 252, 953
ScrFI	CCNGG	2 cut(s)	245, 278
SfaNI	GCATC	5 cut(s)	158, 220, 307, 887, 913
SfcI	CTRYAG	2 cut(s)	398, 795
SinI	GGWCC	3 cut(s)	172, 252, 953
SmiMI	CAYNNNNRTG	1 cut(s)	335
SpeI	ACTAGT	1 cut(s)	602
SphI	GCATGC	1 cut(s)	397
Sse9I	AATT	8 cut(s)	26, 86, 176, 305, 489, 567, 634, 842
SsiI	CCGC	1 cut(s)	516
SspI	AATATT	1 cut(s)	918
SspMI	CTAG	4 cut(s)	45, 371, 428, 603
StyD4I	CCNGG	2 cut(s)	243, 276
StyI	CCWWGG	2 cut(s)	680, 814
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	3 cut(s)	687, 961, 991
TasI	AATT	8 cut(s)	26, 86, 176, 305, 489, 567, 634, 842
TatI	WGTACW	1 cut(s)	94
TfiI	GAWTC	4 cut(s)	205, 542, 594, 672
Tru1I	TTAA	2 cut(s)	492, 929
Tru9I	TTAA	2 cut(s)	492, 929
TscAI	CASTG	2 cut(s)	24, 913
TseFI	GTSAC	1 cut(s)	975
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	975
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	2 cut(s)	24, 913
VpaK11BI	GGWCC	3 cut(s)	172, 252, 953
XapI	RAATTY	2 cut(s)	26, 305
XceI	RCATGY	3 cut(s)	8, 128, 397
XspI	CTAG	4 cut(s)	45, 371, 428, 603
Zsp2I	ATGCAT	1 cut(s)	941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.