Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004551

Physical Location & Seq

Genomic Coordinates Forward (+)

57014628 .. 57016901

Gene Structure 2274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGACGCTTTGGGAATGATTAATGATTTGAATGCAGCATATATAAATTGGTCGGTTGAAGGTGCTTTGGTTGAGGAAGTGCTTTGGTTGTTCGTCGATGGCTGGCTGGAGCTCTTGCCCTTTCTGTTCCAATCCACCTCCTACGATGTGCCGCTGAAGGTTCAGGAATGTTCCTTCTTGATTTTCGCTCAGCTCTCGTACTTCTTCACCCCGTTTAAGGAGGAATTACACACCGTCTTCTTGTACTGCTTGAGCTCCTCCACAAGGTCAGATGAAGTTAAGATAGCTGCGTTTAGTGCCGTGGTCAATTTCATTCGGTGTTTGCCCTATTCTGAAGATCCGGAGATGTTTCACGACGTCTTGATAGAAATGATGAGAACAGGGATGGGGGAATTGAACAAAGGGAAGGAGATCATGGCACAGGAGGCGATCAAGTTGTTCATTGAATTGGCCGCGACCCATCCGACATTGCTCAGCCGCAGGGGACAGATCATCTGGGCTATGCTGCAGATTGCTGAAGCCATAGATGTCTTGGAACAAGGGACCAGGCACTTGGCCATTGAGTTTCTGATTACTCTGGCCGAGGCAGGAGAGCGTGCACCGTGGATAATGAGGAGGTGTCGGGAGTTTGTTGGTCTACTTTTTCCCATTTTAATGAGGATGGTTCCAAATGTCAAAGATGATCCCTCATGGCATACAGCTGAGACTGATGATGACATTGCCTTGGGTGTGAGTGGTGATTACTGTGTTAGGCAGGAGTGTTTGCATAGGCTTGCCATTGCCTTAGGTGGCAATAACATTGTTCCAATTGCGTTAAAACACTTTACTGCCCATTTTGCTGCACCTGAGTGGCCCAAGCATCATGCAGCATTGATTGCCCTTGCTCAAATCACTGAGAGTTGCTTTGAGGTAATGATAAAATATTTGGAGGAAGTGGTGGCAATGGTTTTGAACTCCTTTGAACATCCACATATTCGGGTGTTTTCTGCACTGAATGCCACTATATATGGTTTGCAGAACCGTCGTCTGCTGGATATCTTGACGCCTTATTTGGATGAAGTGGTTTCCCAATTGGTTGTACTTTTGCAGAGTGAGATACAAATGGTGCAAGTAGAAGCATTGACTGCTTTGGCATCAGTTGTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

383

Amino Acids

43.19

Weight (kDa)

4.87

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO5	PF25780	34 - 160	3.1e-10	IPO5-like, TPR repeats
Importin_rep_4	PF18808	178 - 269	7.8e-14	Importin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004551)

Species	Orthologous Gene IDs
malus_domestica	MD11G1005500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0054081 RchiOBHm_Chr5g0054171 RchiOBHm_Chr5g0054201 RchiOBHm_Chr5g0054251
rosa_laevigata	RLG00000034915 RLG00000034916 RLG00000034918 RLG00000034920 RLG00000034921
rosa_multiflora	Rmu_sc0000094.1_g000006 Rmu_sc0000509.1_g000025 Rmu_sc0006889.1_g000007 Rmu_sc0010082.1_g000001 Rmu_sc0023670.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026650 Rroxscaffold_1G00026670
rosa_rugosa	Rorug05G0285300
rosa_samantha	Rh5AG354200 Rh5AG354300 Rh5AG354700 Rh5AG355200 Rh5BG366000 Rh5BG366100 Rh5BG367300 Rh5CG390800 Rh5DG055000 Rh5DG380900 Rh5DG381500
rosa_wichuraiana	Rw5G033390 Rw5G033410 Rw5G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	637
AccII	CGCG	1 cut(s)	455
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	3 cut(s)	152, 453, 478
AclWI	GGATC	2 cut(s)	332, 677
AcoI	YGGCCR	3 cut(s)	450, 555, 579
AcuI	CTGAAG	3 cut(s)	176, 354, 537
AcyI	GRCGYC	2 cut(s)	357, 1043
AfaI	GTAC	3 cut(s)	200, 245, 1080
AfiI	CCNNNNNNNGG	2 cut(s)	217, 264
AgsI	TTSAA	6 cut(s)	31, 59, 397, 446, 952, 962
AjnI	CCWGG	1 cut(s)	545
AleI	CACNNNNGTG	1 cut(s)	847
AluBI	AGCT	5 cut(s)	112, 193, 255, 287, 701
AluI	AGCT	5 cut(s)	112, 193, 255, 287, 701
Alw21I	GWGCWC	3 cut(s)	114, 257, 601
Alw26I	GTCTC	1 cut(s)	698
Alw44I	GTGCAC	1 cut(s)	597
AlwI	GGATC	2 cut(s)	332, 677
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	4 cut(s)	450, 555, 579, 851
ApaLI	GTGCAC	1 cut(s)	597
ApeKI	GCWGC	5 cut(s)	35, 287, 505, 839, 866
ArsI	GACNNNNNNTTYG	2 cut(s)	1033, 1065
AseI	ATTAAT	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	543, 852
AsuHPI	GGTGA	2 cut(s)	199, 749
AvaII	GGWCC	1 cut(s)	543
AxyI	CCTNAGG	1 cut(s)	784
BaeGI	GKGCMC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	557
BanII	GRGCYC	2 cut(s)	114, 257
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	3 cut(s)	114, 257, 601
BbvI	GCAGC	5 cut(s)	47, 274, 492, 826, 878
BccI	CCATC	4 cut(s)	92, 379, 468, 655
BceAI	ACGGC	1 cut(s)	284
BcgI	CGANNNNNNTGC	2 cut(s)	1004, 1038
BciT130I	CCWGG	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	698
BfmI	CTRYAG	1 cut(s)	506
BisI	GCNGC	8 cut(s)	36, 152, 288, 453, 478, 506, 840, 867
BlpI	GCTNAGC	2 cut(s)	189, 473
BlsI	GCNGC	8 cut(s)	37, 153, 289, 454, 479, 507, 841, 868
Bme1390I	CCNGG	1 cut(s)	547
Bme18I	GGWCC	1 cut(s)	543
BmgT120I	GGNCC	2 cut(s)	543, 852
BmiI	GGNNCC	2 cut(s)	544, 666
BmrFI	CCNGG	1 cut(s)	547
BmsI	GCATC	2 cut(s)	868, 1142
BpiI	GAAGAC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	128
Bpu1102I	GCTNAGC	2 cut(s)	189, 473
BpuEI	CTTGAG	1 cut(s)	271
BsaHI	GRCGYC	2 cut(s)	357, 1043
BsaJI	CCNNGG	4 cut(s)	300, 582, 602, 723
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 264
Bse21I	CCTNAGG	1 cut(s)	784
Bse3DI	GCAATG	4 cut(s)	467, 717, 777, 948
BseAI	TCCGGA	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	4 cut(s)	300, 582, 602, 723
BseGI	GGATG	5 cut(s)	390, 460, 666, 964, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	217, 264
BseMI	GCAATG	4 cut(s)	467, 717, 777, 948
BseMII	CTCAG	5 cut(s)	203, 487, 693, 837, 885
BseRI	GAGGAG	2 cut(s)	247, 628
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	5 cut(s)	47, 274, 492, 826, 878
BsgI	GTGCAG	2 cut(s)	825, 972
Bsh1236I	CGCG	1 cut(s)	455
BshFI	GGCC	4 cut(s)	452, 557, 581, 853
BsiHKAI	GWGCWC	3 cut(s)	114, 257, 601
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	2 cut(s)	498, 556
BslI	CCNNNNNNNGG	2 cut(s)	217, 264
BsmAI	GTCTC	1 cut(s)	698
BsmFI	GGGAC	2 cut(s)	498, 556
BsmI	GAATGC	2 cut(s)	37, 1000
BsnI	GGCC	4 cut(s)	452, 557, 581, 853
Bsp1286I	GDGCHC	3 cut(s)	114, 257, 601
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	5 cut(s)	337, 411, 429, 489, 682
Bsp1720I	GCTNAGC	2 cut(s)	189, 473
BspACI	CCGC	3 cut(s)	152, 453, 478
BspANI	GGCC	4 cut(s)	452, 557, 581, 853
BspCNI	CTCAG	5 cut(s)	202, 486, 694, 838, 886
BspEI	TCCGGA	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	455
BspLI	GGNNCC	2 cut(s)	544, 666
BspMAI	CTGCAG	1 cut(s)	510
BspPI	GGATC	2 cut(s)	332, 677
BsrDI	GCAATG	4 cut(s)	467, 717, 777, 948
BssECI	CCNNGG	4 cut(s)	300, 582, 602, 723
BssMI	GATC	5 cut(s)	337, 411, 429, 489, 682
BssNI	GRCGYC	2 cut(s)	357, 1043
BssT1I	CCWWGG	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	4 cut(s)	235, 603, 746, 1022
BstACI	GRCGYC	2 cut(s)	357, 1043
BstAPI	GCANNNNNTGC	3 cut(s)	875, 995, 1124
BstC8I	GCNNGC	3 cut(s)	104, 597, 774
BstDEI	CTNAG	6 cut(s)	189, 473, 702, 784, 846, 894
BstDSI	CCRYGG	2 cut(s)	300, 602
BstENI	CCTNNNNNAGG	1 cut(s)	262
BstF5I	GGATG	5 cut(s)	390, 460, 666, 964, 1060
BstFNI	CGCG	1 cut(s)	455
BstKTI	GATC	5 cut(s)	340, 414, 432, 492, 685
BstMAI	GTCTC	1 cut(s)	698
BstMBI	GATC	5 cut(s)	337, 411, 429, 489, 682
BstMWI	GCNNNNNNNGC	6 cut(s)	296, 425, 836, 875, 995, 1124
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	545
BstSFI	CTRYAG	1 cut(s)	506
BstSLI	GKGCMC	1 cut(s)	601
BstUI	CGCG	1 cut(s)	455
BstV1I	GCAGC	5 cut(s)	47, 274, 492, 826, 878
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	337
Bsu36I	CCTNAGG	1 cut(s)	784
BsuRI	GGCC	4 cut(s)	452, 557, 581, 853
BtgI	CCRYGG	2 cut(s)	300, 602
BtsCI	GGATG	5 cut(s)	390, 460, 666, 964, 1060
BtsIMutI	CAGTG	2 cut(s)	891, 989
Cac8I	GCNNGC	3 cut(s)	104, 597, 774
Cfr13I	GGNCC	2 cut(s)	543, 852
CseI	GACGC	2 cut(s)	14, 1051
Csp6I	GTAC	3 cut(s)	199, 244, 1079
CviAII	CATG	3 cut(s)	415, 690, 863
CviQI	GTAC	3 cut(s)	199, 244, 1079
DdeI	CTNAG	6 cut(s)	189, 473, 702, 784, 846, 894
DpnI	GATC	5 cut(s)	339, 413, 431, 491, 684
DpnII	GATC	5 cut(s)	337, 411, 429, 489, 682
EaeI	YGGCCR	3 cut(s)	450, 555, 579
Ecl136II	GAGCTC	2 cut(s)	112, 255
Eco130I	CCWWGG	1 cut(s)	723
Eco24I	GRGCYC	2 cut(s)	114, 257
Eco32I	GATATC	1 cut(s)	1036
Eco47I	GGWCC	1 cut(s)	543
Eco53kI	GAGCTC	2 cut(s)	112, 255
Eco57I	CTGAAG	3 cut(s)	176, 354, 537
Eco81I	CCTNAGG	1 cut(s)	784
EcoICRI	GAGCTC	2 cut(s)	112, 255
EcoNI	CCTNNNNNAGG	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	545
EcoRV	GATATC	1 cut(s)	1036
EcoT14I	CCWWGG	1 cut(s)	723
EcoT38I	GRGCYC	2 cut(s)	114, 257
ErhI	CCWWGG	1 cut(s)	723
FaeI	CATG	3 cut(s)	418, 693, 866
FaqI	GGGAC	2 cut(s)	498, 556
FatI	CATG	3 cut(s)	414, 689, 862
FblI	GTMKAC	1 cut(s)	637
Fnu4HI	GCNGC	8 cut(s)	36, 152, 288, 453, 478, 506, 840, 867
FokI	GGATG	5 cut(s)	397, 447, 673, 951, 1067
FriOI	GRGCYC	2 cut(s)	114, 257
Fsp4HI	GCNGC	8 cut(s)	36, 152, 288, 453, 478, 506, 840, 867
GluI	GCNGC	8 cut(s)	36, 152, 288, 453, 478, 506, 840, 867
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	4 cut(s)	452, 557, 581, 853
HapII	CCGG	1 cut(s)	341
HgaI	GACGC	2 cut(s)	14, 1051
Hin1I	GRCGYC	2 cut(s)	357, 1043
Hin1II	CATG	3 cut(s)	418, 693, 866
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	2 cut(s)	199, 749
Hpy166II	GTNNAC	2 cut(s)	599, 638
Hpy188I	TCNGA	4 cut(s)	271, 334, 465, 570
Hpy188III	TCNNGA	7 cut(s)	164, 178, 341, 353, 361, 623, 1039
Hpy8I	GTNNAC	2 cut(s)	599, 638
Hpy99I	CGWCG	3 cut(s)	98, 359, 1026
HpyAV	CCTTC	4 cut(s)	53, 151, 184, 400
HpyCH4III	ACNGT	4 cut(s)	235, 603, 746, 1022
HpyCH4IV	ACGT	1 cut(s)	357
HpyF10VI	GCNNNNNNNGC	6 cut(s)	296, 425, 836, 875, 995, 1124
HpyF3I	CTNAG	6 cut(s)	189, 473, 702, 784, 846, 894
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	2 cut(s)	357, 1043
Hsp92II	CATG	3 cut(s)	418, 693, 866
Kpn2I	TCCGGA	1 cut(s)	340
Kzo9I	GATC	5 cut(s)	337, 411, 429, 489, 682
LmnI	GCTCC	2 cut(s)	109, 260
Lsp1109I	GCAGC	5 cut(s)	47, 274, 492, 826, 878
LweI	GCATC	2 cut(s)	868, 1142
MaeII	ACGT	1 cut(s)	357
MalI	GATC	5 cut(s)	339, 413, 431, 491, 684
MboI	GATC	5 cut(s)	337, 411, 429, 489, 682
MboII	GAAGA	3 cut(s)	196, 229, 347
MfeI	CAATTG	2 cut(s)	807, 1070
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	3 cut(s)	114, 257, 601
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	7 cut(s)	46, 224, 307, 392, 446, 807, 1070
MluNI	TGGCCA	1 cut(s)	557
MmeI	TCCRAC	1 cut(s)	488
Mox20I	TGGCCA	1 cut(s)	557
MroI	TCCGGA	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	557
MseI	TTAA	6 cut(s)	21, 216, 279, 653, 815, 1147
MslI	CAYNNNNRTG	2 cut(s)	653, 847
Msp20I	TGGCCA	1 cut(s)	557
MspA1I	CMGCKG	2 cut(s)	154, 701
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	547
MunI	CAATTG	2 cut(s)	807, 1070
Mva1269I	GAATGC	2 cut(s)	37, 1000
MvaI	CCWGG	1 cut(s)	547
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	6 cut(s)	296, 425, 836, 875, 995, 1124
NdeII	GATC	5 cut(s)	337, 411, 429, 489, 682
NlaIII	CATG	3 cut(s)	418, 693, 866
NlaIV	GGNNCC	2 cut(s)	544, 666
NmeAIII	GCCGAG	1 cut(s)	607
OliI	CACNNNNGTG	1 cut(s)	847
PctI	GAATGC	2 cut(s)	37, 1000
PkrI	GCNGC	8 cut(s)	37, 153, 289, 454, 479, 507, 841, 868
PshBI	ATTAAT	1 cut(s)	21
Psp124BI	GAGCTC	2 cut(s)	114, 257
Psp6I	CCWGG	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	2 cut(s)	544, 666
PspPI	GGNCC	2 cut(s)	543, 852
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	3 cut(s)	200, 245, 1080
RsaNI	GTAC	3 cut(s)	199, 244, 1079
RseI	CAYNNNNRTG	2 cut(s)	653, 847
SacI	GAGCTC	2 cut(s)	114, 257
SaqAI	TTAA	6 cut(s)	21, 216, 279, 653, 815, 1147
SatI	GCNGC	8 cut(s)	36, 152, 288, 453, 478, 506, 840, 867
Sau3AI	GATC	5 cut(s)	337, 411, 429, 489, 682
Sau96I	GGNCC	2 cut(s)	543, 852
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	3 cut(s)	114, 257, 601
SfaNI	GCATC	2 cut(s)	868, 1142
SfcI	CTRYAG	1 cut(s)	506
SinI	GGWCC	1 cut(s)	543
SmiMI	CAYNNNNRTG	2 cut(s)	653, 847
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	7 cut(s)	46, 224, 307, 392, 446, 807, 1070
SsiI	CCGC	3 cut(s)	152, 453, 478
SspI	AATATT	1 cut(s)	923
SstI	GAGCTC	2 cut(s)	114, 257
StyD4I	CCNGG	1 cut(s)	545
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	4 cut(s)	235, 603, 746, 1022
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	96
TasI	AATT	7 cut(s)	46, 224, 307, 392, 446, 807, 1070
TatI	WGTACW	2 cut(s)	243, 1078
TauI	GCSGC	3 cut(s)	154, 455, 480
Tru1I	TTAA	6 cut(s)	21, 216, 279, 653, 815, 1147
Tru9I	TTAA	6 cut(s)	21, 216, 279, 653, 815, 1147
TscAI	CASTG	2 cut(s)	898, 996
TseI	GCWGC	5 cut(s)	35, 287, 505, 839, 866
TspDTI	ATGAA	4 cut(s)	288, 301, 430, 1071
TspRI	CASTG	2 cut(s)	898, 996
VneI	GTGCAC	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	543
VspI	ATTAAT	1 cut(s)	21
XagI	CCTNNNNNAGG	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XmiI	GTMKAC	1 cut(s)	637
ZraI	GACGTC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.