Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004549

Physical Location & Seq

Genomic Coordinates Forward (+)

21692028 .. 21693233

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1139100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATCTGGAATCTTCTCATGATCTGGAGAAGCCACTGCTTGTCGATAATTCTCGGGTTCGAATCCGATAGAACCATGCCAGAGATGTCCATATTCTCAGCTCTGCCTTCTTGCTCATCTTTCTTGCTTTTGGAGAAGAATTTGGTGGTTCGACGTTTGGGTTCAAAGAACACTTTGATTCTTGGGACTAGTGGCTATTGGTTGTTCATAGCACATTTGAAACCAACTTGGTACATAATGGTTCCTGTTTCTTTGTACCTTGGGTTTGCCTCTTCAATAATATGGGTCGAGCGGGGAACATATCTAACTGCAGCAGTGCATAGTCATGCCCGAGACGATGGCTTACATGAAGGAACAGTTATTGGCAACTTCAATGGAGAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003009 GO:0003012 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006936 GO:0006937 GO:0006941 GO:0008150 GO:0010959 GO:0015459 GO:0016020 GO:0016021 GO:0016247 GO:0031224 GO:0031226 GO:0032501 GO:0032879 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043269 GO:0043292 GO:0044057 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0050789 GO:0050879 GO:0050881 GO:0051049 GO:0051239 GO:0055120 GO:0065007 GO:0065009 GO:0071944 GO:0090257 GO:0098772 GO:0099080 GO:0099081 GO:0099106 GO:0099512

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 UNC-93

Protein Analysis

129

Amino Acids

14.48

Weight (kDa)

6.96

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004549)

Species	Orthologous Gene IDs
malus_domestica	MD12G1139100.v1.1
rosa_chinensis	RchiOBHm_Chr0c22g0500581 RchiOBHm_Chr1g0352491 RchiOBHm_Chr4g0400001 RchiOBHm_Chr6g0250761 RchiOBHm_Chr7g0206671 RchiOBHm_Chr7g0207021 RchiOBHm_Chr7g0207511
rosa_laevigata	RLG00000009219
rosa_multiflora	Rmu_sc0002040.1_g000047 Rmu_sc0003630.1_g000058 Rmu_sc0006740.1_g000001 Rmu_sc0032049.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344960
rosa_rugosa	Rorug05G0349600 Rorug05G0349600 Rorug05G0349700 Rorug05G0349800 Rorug05G0349900 Rorug07G0006700
rosa_samantha	Rh1AG243100 Rh2AG212000 Rh2AG491800 Rh4AG165600 Rh5DG127900 Rh5DG128800 Rh6AG317800 Rh7DG237200 Rh7DG237600 Rh7DG238400 Rh7DG401800
rosa_wichuraiana	Rw4G008140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	292
AciI	CCGC	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	139, 380
AfaI	GTAC	2 cut(s)	233, 257
AgsI	TTSAA	4 cut(s)	165, 220, 276, 373
AhlI	ACTAGT	1 cut(s)	188
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	327
Ama87I	CYCGRG	2 cut(s)	53, 330
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	2 cut(s)	139, 380
AsuII	TTCGAA	1 cut(s)	60
AvaI	CYCGRG	2 cut(s)	53, 330
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	327
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
BmeT110I	CYCGRG	2 cut(s)	53, 330
BmiI	GGNNCC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	46
Bpu14I	TTCGAA	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	323
BsiHKCI	CYCGRG	2 cut(s)	53, 330
BslFI	GGGAC	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	327
BsmBI	CGTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	199
BsoBI	CYCGRG	2 cut(s)	53, 330
Bsp119I	TTCGAA	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	3, 21
BspACI	CCGC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	313
BspT104I	TTCGAA	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	2 cut(s)	3, 21
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	6, 24
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	2 cut(s)	3, 21
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	323
BtsI	GCAGTG	2 cut(s)	34, 321
BtsIMutI	CAGTG	2 cut(s)	34, 321
CciI	TCATGA	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	232, 256
CviAII	CATG	4 cut(s)	19, 76, 326, 347
CviJI	RGCY	4 cut(s)	33, 101, 195, 342
CviKI_1	RGCY	4 cut(s)	33, 101, 195, 342
CviQI	GTAC	2 cut(s)	232, 256
DdeI	CTNAG	1 cut(s)	97
DpnI	GATC	2 cut(s)	5, 23
DpnII	GATC	2 cut(s)	3, 21
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	259
Eco88I	CYCGRG	2 cut(s)	53, 330
EcoT14I	CCWWGG	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	327
FaeI	CATG	4 cut(s)	22, 79, 329, 350
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	4 cut(s)	18, 75, 325, 346
FauI	CCCGC	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	312
GsuI	CTGGAG	1 cut(s)	46
Hin1II	CATG	4 cut(s)	22, 79, 329, 350
HinfI	GANTC	3 cut(s)	10, 62, 178
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	7, 19, 25
Hpy99I	CGWCG	1 cut(s)	156
HpyAV	CCTTC	2 cut(s)	117, 344
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	311, 319
HpyF3I	CTNAG	1 cut(s)	97
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	4 cut(s)	22, 79, 329, 350
Kzo9I	GATC	2 cut(s)	3, 21
LpnPI	CCDG	3 cut(s)	10, 93, 258
Lsp1109I	GCAGC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	154
MalI	GATC	2 cut(s)	5, 23
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	2 cut(s)	3, 21
MboII	GAAGA	3 cut(s)	5, 148, 264
MluCI	AATT	3 cut(s)	48, 139, 380
MnlI	CCTC	1 cut(s)	280
MslI	CAYNNNNRTG	1 cut(s)	324
NdeII	GATC	2 cut(s)	3, 21
NlaIII	CATG	4 cut(s)	22, 79, 329, 350
NlaIV	GGNNCC	1 cut(s)	243
NspV	TTCGAA	1 cut(s)	60
PagI	TCATGA	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	10, 62, 178
PkrI	GCNGC	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	313
RsaI	GTAC	2 cut(s)	233, 257
RsaNI	GTAC	2 cut(s)	232, 256
RseI	CAYNNNNRTG	1 cut(s)	324
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	3, 21
SetI	ASST	3 cut(s)	103, 157, 261
SfcI	CTRYAG	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	324
SpeI	ACTAGT	1 cut(s)	188
Sse9I	AATT	3 cut(s)	48, 139, 380
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	4 cut(s)	44, 60, 151, 288
TasI	AATT	3 cut(s)	48, 139, 380
TfiI	GAWTC	3 cut(s)	10, 62, 178
TscAI	CASTG	2 cut(s)	41, 321
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	196, 363
TspRI	CASTG	2 cut(s)	41, 321
XapI	RAATTY	2 cut(s)	139, 380
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.