Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004549

Physical Location & Seq

Genomic Coordinates Forward (+)

45543273 .. 45545763

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG243100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCCTAAAGGATTTAGGTCGCCACTGCAGAATTACAAGAAAGAGAGTGAGGGGAGCGACGACGACGGTAAGGCCGCCACTGCTGCTGAGGAAGCTGAGGTTCAGAAGTCGTGGAATTTGAAGCAGAGCAATCAACTGACGCCGAAGTCGATGAGGCTGAGAGGTTTGGCTGAAGATTTGGTCAACAACCTTGGTACCATTGCAAGGTCTGGCATCAAGGACTTCATGAAAGCCTTGGCTGCCGGAGTTGATGTTAGCTTGATGGTCAGTTTGGTGTTGGGTTCGACTCTTACATATCTTGTTGCTAAGAAGGAAGAGGATGTTTATCAAGAGAAGGAAGTGGACAAGTACAATATGTTTTTGGCCTTGATGTTCTTGGCCTTTATGTTTAGGCAGGGTTTGTATGTTGACGTTGGGATGATGATCTATAGAATGAATTGGTTTTGGATGTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

152

Amino Acids

17.3

Weight (kDa)

6.33

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004549)

Species	Orthologous Gene IDs
malus_domestica	MD12G1139100.v1.1
rosa_chinensis	RchiOBHm_Chr0c22g0500581 RchiOBHm_Chr1g0352491 RchiOBHm_Chr4g0400001 RchiOBHm_Chr6g0250761 RchiOBHm_Chr7g0206671 RchiOBHm_Chr7g0207021 RchiOBHm_Chr7g0207511
rosa_laevigata	RLG00000009219
rosa_multiflora	Rmu_sc0002040.1_g000047 Rmu_sc0003630.1_g000058 Rmu_sc0006740.1_g000001 Rmu_sc0032049.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344960
rosa_rugosa	Rorug05G0349600 Rorug05G0349600 Rorug05G0349700 Rorug05G0349800 Rorug05G0349900 Rorug07G0006700
rosa_samantha	Rh1AG243100 Rh2AG212000 Rh2AG491800 Rh4AG165600 Rh5DG127900 Rh5DG128800 Rh6AG317800 Rh7DG237200 Rh7DG237600 Rh7DG238400 Rh7DG401800
rosa_wichuraiana	Rw4G008140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	145
Acc65I	GGTACC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	194
AciI	CCGC	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	196, 350
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	121
AluBI	AGCT	2 cut(s)	95, 258
AluI	AGCT	2 cut(s)	95, 258
AoxI	GGCC	3 cut(s)	72, 363, 378
ApeKI	GCWGC	2 cut(s)	83, 239
ApoI	RAATTY	1 cut(s)	115
Asp718I	GGTACC	1 cut(s)	194
BaeI	ACNNNNGTAYC	2 cut(s)	178, 211
BanI	GGYRCC	1 cut(s)	194
BbvCI	CCTCAGC	2 cut(s)	87, 96
BbvI	GCAGC	2 cut(s)	70, 226
BccI	CCATC	1 cut(s)	256
BfmI	CTRYAG	2 cut(s)	26, 427
BisI	GCNGC	3 cut(s)	75, 84, 240
BlsI	GCNGC	3 cut(s)	76, 85, 241
BmiI	GGNNCC	1 cut(s)	196
BmsI	GCATC	1 cut(s)	222
Bpu10I	CCTNAGC	2 cut(s)	87, 96
BsaBI	GATNNNNATC	2 cut(s)	324, 422
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	190, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	2 cut(s)	324, 422
BseDI	CCNNGG	2 cut(s)	190, 234
BseGI	GGATG	3 cut(s)	325, 423, 453
BseJI	GATNNNNATC	2 cut(s)	324, 422
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	3 cut(s)	78, 87, 149
BseXI	GCAGC	2 cut(s)	70, 226
BshFI	GGCC	3 cut(s)	74, 365, 380
BshNI	GGYRCC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	204
BsnI	GGCC	3 cut(s)	74, 365, 380
Bsp143I	GATC	1 cut(s)	423
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	3 cut(s)	74, 365, 380
BspCNI	CTCAG	3 cut(s)	79, 88, 150
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	196
BspMAI	CTGCAG	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	190, 234
BssMI	GATC	1 cut(s)	423
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	2 cut(s)	190, 234
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	309
BstACI	GRCGYC	1 cut(s)	140
BstDEI	CTNAG	4 cut(s)	87, 96, 158, 306
BstF5I	GGATG	3 cut(s)	325, 423, 453
BstKTI	GATC	1 cut(s)	426
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 83, 92, 239
BstSFI	CTRYAG	2 cut(s)	26, 427
BstV1I	GCAGC	2 cut(s)	70, 226
BsuRI	GGCC	3 cut(s)	74, 365, 380
BtsCI	GGATG	3 cut(s)	325, 423, 453
BtsI	GCAGTG	2 cut(s)	23, 78
BtsIMutI	CAGTG	2 cut(s)	23, 78
CciI	TCATGA	1 cut(s)	225
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	195, 349
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	9 cut(s)	74, 95, 157, 170, 233, 239, 258, 365, 380
CviKI_1	RGCY	9 cut(s)	74, 95, 157, 170, 233, 239, 258, 365, 380
CviQI	GTAC	2 cut(s)	195, 349
DdeI	CTNAG	4 cut(s)	87, 96, 158, 306
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
DrdI	GACNNNNNNGTC	1 cut(s)	145
DseDI	GACNNNNNNGTC	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco130I	CCWWGG	2 cut(s)	190, 234
Eco57I	CTGAAG	1 cut(s)	192
EcoT14I	CCWWGG	2 cut(s)	190, 234
ErhI	CCWWGG	2 cut(s)	190, 234
FaeI	CATG	1 cut(s)	229
FaiI	YATR	6 cut(s)	227, 295, 356, 386, 405, 429
FatI	CATG	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	75, 84, 240
FokI	GGATG	2 cut(s)	332, 430
Fsp4HI	GCNGC	3 cut(s)	75, 84, 240
GluI	GCNGC	3 cut(s)	75, 84, 240
HaeIII	GGCC	3 cut(s)	74, 365, 380
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	229
HincII	GTYRAC	2 cut(s)	184, 409
HindII	GTYRAC	2 cut(s)	184, 409
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	243
Hpy166II	GTNNAC	3 cut(s)	184, 343, 409
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	2 cut(s)	226, 329
Hpy8I	GTNNAC	3 cut(s)	184, 343, 409
Hpy99I	CGWCG	3 cut(s)	62, 65, 68
HpyAV	CCTTC	2 cut(s)	304, 328
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	2 cut(s)	28, 203
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 83, 92, 239
HpyF3I	CTNAG	4 cut(s)	87, 96, 158, 306
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	229
KpnI	GGTACC	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	3 cut(s)	195, 256, 380
Lsp1109I	GCAGC	2 cut(s)	70, 226
LweI	GCATC	1 cut(s)	222
MaeII	ACGT	1 cut(s)	411
MalI	GATC	1 cut(s)	425
MboI	GATC	1 cut(s)	423
MboII	GAAGA	2 cut(s)	185, 326
MluCI	AATT	4 cut(s)	31, 115, 436, 454
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	6 cut(s)	43, 82, 91, 147, 155, 310
MseI	TTAA	2 cut(s)	453, 457
MspI	CCGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	4 cut(s)	80, 83, 92, 239
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	1 cut(s)	196
PacI	TTAATTAA	1 cut(s)	457
PagI	TCATGA	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	76, 85, 241
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	30
RsaI	GTAC	2 cut(s)	196, 350
RsaNI	GTAC	2 cut(s)	195, 349
SaqAI	TTAA	2 cut(s)	453, 457
SatI	GCNGC	3 cut(s)	75, 84, 240
Sau3AI	GATC	1 cut(s)	423
SchI	GAGTC	1 cut(s)	280
SetI	ASST	8 cut(s)	20, 97, 102, 166, 192, 209, 260, 414
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	2 cut(s)	26, 427
Sse9I	AATT	4 cut(s)	31, 115, 436, 454
SsiI	CCGC	1 cut(s)	75
StyI	CCWWGG	2 cut(s)	190, 234
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	2 cut(s)	149, 284
TasI	AATT	4 cut(s)	31, 115, 436, 454
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	453, 457
Tru9I	TTAA	2 cut(s)	453, 457
TscAI	CASTG	2 cut(s)	30, 85
TseI	GCWGC	2 cut(s)	83, 239
TspDTI	ATGAA	3 cut(s)	214, 242, 449
TspRI	CASTG	2 cut(s)	30, 85
XapI	RAATTY	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.