heat shock protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD12G1139100.v1.1 |
| rosa_chinensis | RchiOBHm_Chr0c22g0500581 RchiOBHm_Chr1g0352491 RchiOBHm_Chr4g0400001 RchiOBHm_Chr6g0250761 RchiOBHm_Chr7g0206671 RchiOBHm_Chr7g0207021 RchiOBHm_Chr7g0207511 |
| rosa_laevigata | RLG00000009219 |
| rosa_multiflora | Rmu_sc0002040.1_g000047 Rmu_sc0003630.1_g000058 Rmu_sc0006740.1_g000001 Rmu_sc0032049.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00344960 |
| rosa_rugosa | Rorug05G0349600 Rorug05G0349600 Rorug05G0349700 Rorug05G0349800 Rorug05G0349900 Rorug07G0006700 |
| rosa_samantha | Rh1AG243100 Rh2AG212000 Rh2AG491800 Rh4AG165600 Rh5DG127900 Rh5DG128800 Rh6AG317800 Rh7DG237200 Rh7DG237600 Rh7DG238400 Rh7DG401800 |
| rosa_wichuraiana | Rw4G008140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 26 |
| AccB1I | GGYRCC | 1 cut(s) | 26 |
| AfaI | GTAC | 2 cut(s) | 28, 182 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 36 |
| AluBI | AGCT | 1 cut(s) | 90 |
| AluI | AGCT | 1 cut(s) | 90 |
| AoxI | GGCC | 1 cut(s) | 195 |
| ApeKI | GCWGC | 1 cut(s) | 71 |
| Asp718I | GGTACC | 1 cut(s) | 26 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 10, 43 |
| BanI | GGYRCC | 1 cut(s) | 26 |
| BbvI | GCAGC | 1 cut(s) | 58 |
| BccI | CCATC | 1 cut(s) | 88 |
| BfaI | CTAG | 1 cut(s) | 75 |
| BisI | GCNGC | 1 cut(s) | 72 |
| BlsI | GCNGC | 1 cut(s) | 73 |
| BmiI | GGNNCC | 1 cut(s) | 28 |
| BmsI | GCATC | 1 cut(s) | 54 |
| BsaJI | CCNNGG | 2 cut(s) | 22, 66 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 36 |
| Bse3DI | GCAATG | 1 cut(s) | 30 |
| BseDI | CCNNGG | 2 cut(s) | 22, 66 |
| BseGI | GGATG | 3 cut(s) | 10, 157, 240 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 36 |
| BseMI | GCAATG | 1 cut(s) | 30 |
| BseXI | GCAGC | 1 cut(s) | 58 |
| BshFI | GGCC | 1 cut(s) | 197 |
| BshNI | GGYRCC | 1 cut(s) | 26 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 36 |
| BsnI | GGCC | 1 cut(s) | 197 |
| BspANI | GGCC | 1 cut(s) | 197 |
| BspHI | TCATGA | 1 cut(s) | 57 |
| BspLI | GGNNCC | 1 cut(s) | 28 |
| BspT107I | GGYRCC | 1 cut(s) | 26 |
| BsrDI | GCAATG | 1 cut(s) | 30 |
| BssECI | CCNNGG | 2 cut(s) | 22, 66 |
| BssT1I | CCWWGG | 2 cut(s) | 22, 66 |
| Bst6I | CTCTTC | 2 cut(s) | 141, 156 |
| BstDEI | CTNAG | 1 cut(s) | 138 |
| BstF5I | GGATG | 3 cut(s) | 10, 157, 240 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 71 |
| BstV1I | GCAGC | 1 cut(s) | 58 |
| BsuRI | GGCC | 1 cut(s) | 197 |
| BtsCI | GGATG | 3 cut(s) | 10, 157, 240 |
| CciI | TCATGA | 1 cut(s) | 57 |
| Csp6I | GTAC | 2 cut(s) | 27, 181 |
| CviAII | CATG | 1 cut(s) | 58 |
| CviJI | RGCY | 4 cut(s) | 65, 71, 90, 197 |
| CviKI_1 | RGCY | 4 cut(s) | 65, 71, 90, 197 |
| CviQI | GTAC | 2 cut(s) | 27, 181 |
| DdeI | CTNAG | 1 cut(s) | 138 |
| Eam1104I | CTCTTC | 2 cut(s) | 141, 156 |
| EarI | CTCTTC | 2 cut(s) | 141, 156 |
| Eco130I | CCWWGG | 2 cut(s) | 22, 66 |
| EcoT14I | CCWWGG | 2 cut(s) | 22, 66 |
| ErhI | CCWWGG | 2 cut(s) | 22, 66 |
| FaeI | CATG | 1 cut(s) | 61 |
| FaiI | YATR | 6 cut(s) | 59, 127, 159, 188, 203, 222 |
| FatI | CATG | 1 cut(s) | 57 |
| Fnu4HI | GCNGC | 1 cut(s) | 72 |
| FokI | GGATG | 2 cut(s) | 17, 164 |
| Fsp4HI | GCNGC | 1 cut(s) | 72 |
| FspBI | CTAG | 1 cut(s) | 75 |
| GluI | GCNGC | 1 cut(s) | 72 |
| HaeIII | GGCC | 1 cut(s) | 197 |
| Hin1II | CATG | 1 cut(s) | 61 |
| HincII | GTYRAC | 2 cut(s) | 16, 226 |
| HindII | GTYRAC | 2 cut(s) | 16, 226 |
| Hpy166II | GTNNAC | 2 cut(s) | 16, 226 |
| Hpy188III | TCNNGA | 1 cut(s) | 58 |
| Hpy8I | GTNNAC | 2 cut(s) | 16, 226 |
| HpyAV | CCTTC | 2 cut(s) | 136, 160 |
| HpyCH4IV | ACGT | 1 cut(s) | 228 |
| HpyCH4V | TGCA | 2 cut(s) | 35, 125 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 71 |
| HpyF3I | CTNAG | 1 cut(s) | 138 |
| HpySE526I | ACGT | 1 cut(s) | 228 |
| Hsp92II | CATG | 1 cut(s) | 61 |
| KpnI | GGTACC | 1 cut(s) | 30 |
| LpnPI | CCDG | 2 cut(s) | 27, 197 |
| Lsp1109I | GCAGC | 1 cut(s) | 58 |
| LweI | GCATC | 1 cut(s) | 54 |
| MaeI | CTAG | 1 cut(s) | 75 |
| MaeII | ACGT | 1 cut(s) | 228 |
| MboII | GAAGA | 2 cut(s) | 158, 173 |
| MnlI | CCTC | 1 cut(s) | 142 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 71 |
| NlaIII | CATG | 1 cut(s) | 61 |
| NlaIV | GGNNCC | 1 cut(s) | 28 |
| PagI | TCATGA | 1 cut(s) | 57 |
| PkrI | GCNGC | 1 cut(s) | 73 |
| PspN4I | GGNNCC | 1 cut(s) | 28 |
| RsaI | GTAC | 2 cut(s) | 28, 182 |
| RsaNI | GTAC | 2 cut(s) | 27, 181 |
| SatI | GCNGC | 1 cut(s) | 72 |
| SetI | ASST | 4 cut(s) | 24, 41, 92, 231 |
| SfaNI | GCATC | 1 cut(s) | 54 |
| SspMI | CTAG | 1 cut(s) | 75 |
| StyI | CCWWGG | 2 cut(s) | 22, 66 |
| TaiI | ACGT | 1 cut(s) | 231 |
| TaqI | TCGA | 1 cut(s) | 116 |
| TatI | WGTACW | 1 cut(s) | 180 |
| TseI | GCWGC | 1 cut(s) | 71 |
| TspDTI | ATGAA | 3 cut(s) | 46, 74, 174 |
| XspI | CTAG | 1 cut(s) | 75 |