Rw4G008140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0004549
Physical Location & Seq
Forward (+)
17639933 .. 17640460
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008140.1

Sequence Viewer

Length: 312 bp
ATGACTTATGGGCTTTATCTGATGAGAGGATTCTTCCATCGGTATTGCCAGTTTCTCTCTCGCAATCTCACAGTCGGCGGGCATCCTTGCTTTGTGGGCGAGTGTTACACCCGGGACAGTGTTGATTGTATTGGCCTGAAGCAACTTTTATCTGGATTGCTTATTGTTACTGGTCAGCTTCACTTTCATTTTCTCTTACAAAAAGATGACCTGGTCTGGGGGCTTGACTCTTTGCCGCAAGATCTCATTTGTAGAATGTACAAGCTTGTCGGAGACAGGTGGTTAGGAAACTGGGATCAAAGAATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

12.05

Weight (kDa)

7.67

Isoelectric Point (pI)

21.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 78, 236
AclWI GGATC 1 cut(s) 303
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 217
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 178, 265
AluI AGCT 2 cut(s) 178, 265
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 1 cut(s) 303
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 1 cut(s) 133
AsuC2I CCSGG 2 cut(s) 112, 113
AvaI CYCGRG 1 cut(s) 111
BccI CCATC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 212
BcnI CCSGG 2 cut(s) 112, 113
BcoDI GTCTC 1 cut(s) 267
BglII AGATCT 1 cut(s) 241
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 3 cut(s) 112, 113, 212
BmeT110I CYCGRG 1 cut(s) 111
BmrFI CCNGG 3 cut(s) 112, 113, 212
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 301
BpuMI CCSGG 2 cut(s) 112, 113
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse1I ACTGG 3 cut(s) 49, 175, 296
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 217
BseNI ACTGG 3 cut(s) 49, 175, 296
BshFI GGCC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 309
BsnI GGCC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 111
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 2 cut(s) 241, 295
BspACI CCGC 2 cut(s) 78, 236
BspANI GGCC 1 cut(s) 135
BspPI GGATC 1 cut(s) 303
BsrGI TGTACA 1 cut(s) 258
BsrI ACTGG 3 cut(s) 49, 175, 296
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 241, 295
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 2 cut(s) 73, 119
BstAUI TGTACA 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 80
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 2 cut(s) 244, 298
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 2 cut(s) 241, 295
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 3 cut(s) 110, 111, 210
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 135
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 80
Cfr9I CCCGGG 1 cut(s) 111
CsiI ACCWGGT 1 cut(s) 210
Csp6I GTAC 1 cut(s) 259
CviJI RGCY 5 cut(s) 13, 135, 178, 223, 265
CviKI_1 RGCY 5 cut(s) 13, 135, 178, 223, 265
CviQI GTAC 1 cut(s) 259
DpnI GATC 2 cut(s) 243, 297
DpnII GATC 2 cut(s) 241, 295
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 210
FaiI YATR 1 cut(s) 9
FaqI GGGAC 1 cut(s) 128
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 236
GluI GCNGC 1 cut(s) 236
HaeIII GGCC 1 cut(s) 135
HapII CCGG 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 2 cut(s) 30, 227
HpaII CCGG 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 21, 272
Hpy188III TCNNGA 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 73, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
Kzo9I GATC 2 cut(s) 241, 295
LweI GCATC 1 cut(s) 91
MabI ACCWGGT 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 104, 166
MalI GATC 2 cut(s) 243, 297
MboI GATC 2 cut(s) 241, 295
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 241
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 1 cut(s) 20
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 3 cut(s) 112, 113, 212
Mva1269I GAATGC 1 cut(s) 309
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 96
NciI CCSGG 2 cut(s) 112, 113
NdeII GATC 2 cut(s) 241, 295
PctI GAATGC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 30
PflFI GACNNNGTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PsuI RGATCY 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 212
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 2 cut(s) 241, 295
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 3 cut(s) 112, 113, 212
SetI ASST 4 cut(s) 180, 213, 267, 281
SexAI ACCWGGT 1 cut(s) 210
SfaNI GCATC 1 cut(s) 91
SmaI CCCGGG 1 cut(s) 113
SsiI CCGC 2 cut(s) 78, 236
StyD4I CCNGG 3 cut(s) 110, 111, 210
TaaI ACNGT 2 cut(s) 73, 119
TatI WGTACW 1 cut(s) 258
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 1 cut(s) 30
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 176
TspMI CCCGGG 1 cut(s) 111
TspRI CASTG 1 cut(s) 124
Tth111I GACNNNGTC 1 cut(s) 212
XmaI CCCGGG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.