Rmu_sc0032049.1_g000001

UNC93-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032049.1
OG0004549
Physical Location & Seq
Forward (+)
251 .. 852
602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032049.1_g000001.1.cds

Sequence Viewer

Length: 405 bp
atggccccttcttctcgcgacgaagagacacctctcgtcgtcgccgacgactcgccggtcgaggagggaaggagtcataccagagatgttcatattatcagctccgcgtttctgttgatctttcttgcttacggtgccgcccagaatctggagagctctgtcaacactgaggaggatttgggaacgacgtcgcttgggattttgtacttgtcgttcacgtttttctctctggtggcgtctcctgtggttaggaaactgggaccaaagaatgctttgattcttgggactactgggtattggttgttcattgctgctaatttgaagccaacctggtatactatggttccagctgcattgtacctgggttttgctgcttccataatatgggttggccaggtaatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UNC-93

Protein Analysis

134

Amino Acids

14.52

Weight (kDa)

4.77

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 134
AccB7I CCANNNNNTGG 2 cut(s) 148, 384
AccI GTMKAC 1 cut(s) 335
AccII CGCG 2 cut(s) 18, 107
AciI CCGC 2 cut(s) 105, 138
AcoI YGGCCR 1 cut(s) 391
AcyI GRCGYC 2 cut(s) 188, 236
AfaI GTAC 2 cut(s) 206, 359
AfiI CCNNNNNNNGG 2 cut(s) 148, 384
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 3 cut(s) 329, 360, 393
AluBI AGCT 3 cut(s) 102, 156, 350
AluI AGCT 3 cut(s) 102, 156, 350
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 2 cut(s) 20, 243
AlwNI CAGNNNCTG 1 cut(s) 148
AoxI GGCC 2 cut(s) 3, 391
ApeKI GCWGC 3 cut(s) 311, 350, 371
AspS9I GGNCC 2 cut(s) 4, 260
AvaII GGWCC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 393
BanI GGYRCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 158
BarI GAAGNNNNNNTAC 2 cut(s) 61, 93
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 298, 337, 358
BciT130I CCWGG 3 cut(s) 331, 362, 395
BcoDI GTCTC 2 cut(s) 20, 243
BisI GCNGC 4 cut(s) 138, 312, 351, 372
BlsI GCNGC 4 cut(s) 139, 313, 352, 373
Bme1390I CCNGG 3 cut(s) 331, 362, 395
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 4, 260
BmiI GGNNCC 4 cut(s) 6, 136, 261, 345
BmrFI CCNGG 3 cut(s) 331, 362, 395
BmrI ACTGGG 2 cut(s) 266, 300
BmuI ACTGGG 2 cut(s) 266, 300
BpmI CTGGAG 1 cut(s) 170
BsaHI GRCGYC 2 cut(s) 188, 236
BsaJI CCNNGG 1 cut(s) 361
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 384
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 261, 295
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 3 cut(s) 331, 362, 395
BseDI CCNNGG 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 148, 384
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 261, 295
BseRI GAGGAG 2 cut(s) 77, 185
BseXI GCAGC 3 cut(s) 298, 337, 358
Bsh1236I CGCG 2 cut(s) 18, 107
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 5, 393
BshNI GGYRCC 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 2 cut(s) 273, 298
BslI CCNNNNNNNGG 2 cut(s) 148, 384
BsmAI GTCTC 2 cut(s) 20, 243
BsmBI CGTCTC 1 cut(s) 243
BsmFI GGGAC 2 cut(s) 273, 298
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 2 cut(s) 5, 393
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 117
Bsp68I TCGCGA 1 cut(s) 18
BspACI CCGC 2 cut(s) 105, 138
BspANI GGCC 2 cut(s) 5, 393
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 2 cut(s) 18, 107
BspLI GGNNCC 4 cut(s) 6, 136, 261, 345
BspT107I GGYRCC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 2 cut(s) 261, 295
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 1 cut(s) 117
BssNAI GTATAC 1 cut(s) 336
BssNI GRCGYC 2 cut(s) 188, 236
Bst1107I GTATAC 1 cut(s) 336
Bst2UI CCWGG 3 cut(s) 331, 362, 395
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 18
BstACI GRCGYC 2 cut(s) 188, 236
BstDEI CTNAG 1 cut(s) 168
BstFNI CGCG 2 cut(s) 18, 107
BstKTI GATC 1 cut(s) 120
BstMAI GTCTC 2 cut(s) 20, 243
BstMBI GATC 1 cut(s) 117
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 3 cut(s) 331, 362, 395
BstSCI CCNGG 3 cut(s) 329, 360, 393
BstUI CGCG 2 cut(s) 18, 107
BstV1I GCAGC 3 cut(s) 298, 337, 358
BstZ17I GTATAC 1 cut(s) 336
BsuRI GGCC 2 cut(s) 5, 393
BtsIMutI CAGTG 1 cut(s) 165
BtuMI TCGCGA 1 cut(s) 18
CaiI CAGNNNCTG 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 4, 260
CseI GACGC 1 cut(s) 225
CsiI ACCWGGT 1 cut(s) 329
Csp6I GTAC 2 cut(s) 205, 358
CviJI RGCY 6 cut(s) 5, 102, 156, 325, 350, 393
CviKI_1 RGCY 6 cut(s) 5, 102, 156, 325, 350, 393
CviQI GTAC 2 cut(s) 205, 358
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 156
EcoRII CCWGG 3 cut(s) 329, 360, 393
EcoT38I GRGCYC 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 243
FaiI YATR 7 cut(s) 78, 93, 336, 341, 380, 385, 403
FaqI GGGAC 2 cut(s) 273, 298
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 4 cut(s) 138, 312, 351, 372
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 4 cut(s) 138, 312, 351, 372
GluI GCNGC 4 cut(s) 138, 312, 351, 372
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 2 cut(s) 5, 393
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 225
Hin1I GRCGYC 2 cut(s) 188, 236
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 4 cut(s) 50, 73, 145, 277
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 3 cut(s) 163, 216, 336
Hpy188III TCNNGA 2 cut(s) 17, 149
Hpy8I GTNNAC 3 cut(s) 163, 216, 336
Hpy99I CGWCG 6 cut(s) 23, 41, 44, 50, 190, 193
HpyAV CCTTC 2 cut(s) 18, 63
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 2 cut(s) 188, 218
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 2 cut(s) 188, 218
Hsp92I GRCGYC 2 cut(s) 188, 236
Kzo9I GATC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 3 cut(s) 298, 337, 358
MabI ACCWGGT 1 cut(s) 329
MaeII ACGT 2 cut(s) 188, 218
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 2 cut(s) 3, 35
MhlI GDGCHC 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 1 cut(s) 316
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 2 cut(s) 44, 82
MnlI CCTC 5 cut(s) 42, 55, 58, 163, 166
Mox20I TGGCCA 1 cut(s) 393
MscI TGGCCA 1 cut(s) 393
Msp20I TGGCCA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 3 cut(s) 331, 362, 395
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 3 cut(s) 331, 362, 395
MvnI CGCG 2 cut(s) 18, 107
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 1 cut(s) 117
NlaIV GGNNCC 4 cut(s) 6, 136, 261, 345
NruI TCGCGA 1 cut(s) 18
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 45
PctI GAATGC 1 cut(s) 274
PfeI GAWTC 2 cut(s) 145, 277
PflMI CCANNNNNTGG 2 cut(s) 148, 384
PkrI GCNGC 4 cut(s) 139, 313, 352, 373
PleI GAGTC 2 cut(s) 44, 81
PpsI GAGTC 2 cut(s) 44, 81
Psp124BI GAGCTC 1 cut(s) 158
Psp6I CCWGG 3 cut(s) 329, 360, 393
PspGI CCWGG 3 cut(s) 329, 360, 393
PspN4I GGNNCC 4 cut(s) 6, 136, 261, 345
PspPI GGNCC 2 cut(s) 4, 260
PsrI GAACNNNNNNTAC 4 cut(s) 197, 229, 287, 319
PstNI CAGNNNCTG 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 350
RruI TCGCGA 1 cut(s) 18
RsaI GTAC 2 cut(s) 206, 359
RsaNI GTAC 2 cut(s) 205, 358
SacI GAGCTC 1 cut(s) 158
SatI GCNGC 4 cut(s) 138, 312, 351, 372
Sau3AI GATC 1 cut(s) 117
Sau96I GGNCC 2 cut(s) 4, 260
SchI GAGTC 2 cut(s) 44, 82
ScrFI CCNGG 3 cut(s) 331, 362, 395
SduI GDGCHC 1 cut(s) 158
SetI ASST 9 cut(s) 34, 104, 158, 191, 221, 332, 352, 363, 399
SexAI ACCWGGT 1 cut(s) 329
SinI GGWCC 1 cut(s) 260
Sse9I AATT 1 cut(s) 316
SsiI CCGC 2 cut(s) 105, 138
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 3 cut(s) 329, 360, 393
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 2 cut(s) 191, 221
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 316
TatI WGTACW 1 cut(s) 204
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 2 cut(s) 145, 277
TscAI CASTG 1 cut(s) 172
TseI GCWGC 3 cut(s) 311, 350, 371
TspDTI ATGAA 2 cut(s) 80, 295
TspRI CASTG 1 cut(s) 172
Van91I CCANNNNNTGG 2 cut(s) 148, 384
VpaK11BI GGWCC 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 335
ZraI GACGTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.