RchiOBHm_Chr6g0250761

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
6121594 .. 6123502
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22477

Sequence Viewer

Length: 171 bp
ATGAAAGCCTTGGCTGCCGGAGTTGATGTTAGCTTGATGGTCAGTTTGGTGTTGAGTTCGACTCTTGCATATCTTATTGCTAAGAAGGAAGAGGATGTTTATCAAGAGAAGGAAGTGGACAAGTACAATATGTTTTTGGCCTTGATGTTCTTGGCCTTTATGTTTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.38

Weight (kDa)

5.1

Isoelectric Point (pI)

17.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 125
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
AoxI GGCC 2 cut(s) 138, 153
ApeKI GCWGC 1 cut(s) 14
BccI CCATC 1 cut(s) 31
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 9
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bse8I GATNNNNATC 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 99
BshFI GGCC 2 cut(s) 140, 155
BsiSI CCGG 1 cut(s) 18
BsnI GGCC 2 cut(s) 140, 155
BspANI GGCC 2 cut(s) 140, 155
BssECI CCNNGG 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 14
BsuRI GGCC 2 cut(s) 140, 155
BtsCI GGATG 1 cut(s) 100
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 5 cut(s) 8, 14, 33, 140, 155
CviKI_1 RGCY 5 cut(s) 8, 14, 33, 140, 155
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaiI YATR 3 cut(s) 70, 131, 161
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 140, 155
HapII CCGG 1 cut(s) 18
HinfI GANTC 1 cut(s) 61
HpaII CCGG 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 79, 103
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 81
LpnPI CCDG 1 cut(s) 31
MboII GAAGA 1 cut(s) 101
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 1 cut(s) 85
MspI CCGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 1 cut(s) 15
SchI GAGTC 1 cut(s) 55
SetI ASST 2 cut(s) 35, 170
SgeI CNNG 8 cut(s) 22, 30, 46, 77, 116, 133, 154, 163
StyI CCWWGG 1 cut(s) 9
TaqI TCGA 1 cut(s) 59
TatI WGTACW 1 cut(s) 123
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.