Rmu_sc0002040.1_g000047

UNC93-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002040.1
OG0004549
Physical Location & Seq
Reverse (-)
200329 .. 201000
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002040.1_g000047.1.cds

Sequence Viewer

Length: 339 bp
atgcagaagatgaaggtgtcggagatggcggaggcgaacttgttgtactgcactgacgagggggagctgtgctgggccagtgataagaagtactacagaggaggatttgggaacaatatcatgtctgtgtttctgttgatcttttttgcttacgatgctgctcaaaatctggagagcactatcaacactgaggaggatttgggaacaacgtcgcttgagattttgtacttgtctccaatggttaggaaactaggaccaaagaatgctttgattcttaggactactggatattggttgttcattgctactaatttgaagccaacttggtacttttactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UNC-93

Protein Analysis

112

Amino Acids

12.91

Weight (kDa)

5.05

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AfaI GTAC 4 cut(s) 47, 92, 227, 329
AgsI TTSAA 1 cut(s) 316
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 237
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 75, 254
AvaII GGWCC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 94
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmcAI AGTACT 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 75, 254
BmsI GCATC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 236
Bse1I ACTGG 2 cut(s) 78, 289
Bse3DI GCAATG 1 cut(s) 300
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 78, 289
BseRI GAGGAG 2 cut(s) 114, 206
BseXI GCAGC 1 cut(s) 145
BseYI CCCAGC 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 34
BshFI GGCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 1 cut(s) 29
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 300
BsrI ACTGG 2 cut(s) 78, 289
BssMI GATC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 189, 275
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 77
BtsIMutI CAGTG 3 cut(s) 51, 85, 186
Cfr13I GGNCC 2 cut(s) 75, 254
Csp6I GTAC 4 cut(s) 46, 91, 226, 328
CviAII CATG 1 cut(s) 121
CviJI RGCY 3 cut(s) 67, 77, 319
CviKI_1 RGCY 3 cut(s) 67, 77, 319
CviQI GTAC 4 cut(s) 46, 91, 226, 328
DdeI CTNAG 2 cut(s) 189, 275
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 254
FaeI CATG 1 cut(s) 124
FaiI YATR 1 cut(s) 122
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 251
GluI GCNGC 1 cut(s) 159
GsaI CCCAGC 1 cut(s) 76
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 1 cut(s) 124
HinfI GANTC 1 cut(s) 271
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 170
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 4, 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 189, 275
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 58, 91, 155, 270
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 209
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 1 cut(s) 310
MnlI CCTC 6 cut(s) 25, 52, 92, 95, 184, 187
MslI CAYNNNNRTG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 268
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 124
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 72
PspPI GGNCC 2 cut(s) 75, 254
PsrI GAACNNNNNNTAC 2 cut(s) 29, 61
RsaI GTAC 4 cut(s) 47, 92, 227, 329
RsaNI GTAC 4 cut(s) 46, 91, 226, 328
RseI CAYNNNNRTG 1 cut(s) 125
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 2 cut(s) 75, 254
ScaI AGTACT 1 cut(s) 92
SduI GDGCHC 1 cut(s) 179
SetI ASST 3 cut(s) 18, 69, 212
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 94
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 310
SsiI CCGC 1 cut(s) 29
SspMI CTAG 1 cut(s) 251
TaiI ACGT 1 cut(s) 212
TasI AATT 1 cut(s) 310
TatI WGTACW 3 cut(s) 45, 90, 225
TfiI GAWTC 1 cut(s) 271
TscAI CASTG 3 cut(s) 58, 85, 193
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 26, 289
TspRI CASTG 3 cut(s) 58, 85, 193
VpaK11BI GGWCC 1 cut(s) 254
XspI CTAG 1 cut(s) 251
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.