Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004549

Physical Location & Seq

Genomic Coordinates Reverse (-)

51707890 .. 51710125

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG317800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTCGCCGAAGCACCACGGTCGAAGCTCCAATCCCCGATCGATATCAACGGTCCTCTGCCGCTACTCCCCGCCGACTCCTCCGGCGTTGTGGAGAAGGAAGAAGACGAATTTCCTGATGGAATATCTGTTATGGGGGATTCTGATAATGCTGCAGCTGCCGTAAATATAAATTTGGTCAACAACCTTGGTACCATTGCAAGGTCTGGCACCAAGAAATTCATGGAAGCCTTGGCTACTAGATCTGATGTTAGCATGATTGGTCAGTTTGGTGTTGGATTCTACTTTGCATATCATGTTGTTGAGAAGGAAGAGGAAGTTGATGAAGAGAAGGAAGTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

114

Amino Acids

12.2

Weight (kDa)

4.27

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004549)

Species	Orthologous Gene IDs
malus_domestica	MD12G1139100.v1.1
rosa_chinensis	RchiOBHm_Chr0c22g0500581 RchiOBHm_Chr1g0352491 RchiOBHm_Chr4g0400001 RchiOBHm_Chr6g0250761 RchiOBHm_Chr7g0206671 RchiOBHm_Chr7g0207021 RchiOBHm_Chr7g0207511
rosa_laevigata	RLG00000009219
rosa_multiflora	Rmu_sc0002040.1_g000047 Rmu_sc0003630.1_g000058 Rmu_sc0006740.1_g000001 Rmu_sc0032049.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344960
rosa_rugosa	Rorug05G0349600 Rorug05G0349600 Rorug05G0349700 Rorug05G0349800 Rorug05G0349900 Rorug07G0006700
rosa_samantha	Rh1AG243100 Rh2AG212000 Rh2AG491800 Rh4AG165600 Rh5DG127900 Rh5DG128800 Rh6AG317800 Rh7DG237200 Rh7DG237600 Rh7DG238400 Rh7DG401800
rosa_wichuraiana	Rw4G008140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	2 cut(s)	191, 209
AciI	CCGC	2 cut(s)	62, 72
AcsI	RAATTY	3 cut(s)	110, 172, 218
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	28, 158
AluI	AGCT	2 cut(s)	28, 158
ApeKI	GCWGC	3 cut(s)	152, 155, 158
ApoI	RAATTY	3 cut(s)	110, 172, 218
Asp718I	GGTACC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	53
BaeI	ACNNNNGTAYC	2 cut(s)	175, 208
BanI	GGYRCC	2 cut(s)	191, 209
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	139, 145, 167
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	146
BcgI	CGANNNNNNTGC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	153
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	4 cut(s)	62, 153, 156, 159
BlsI	GCNGC	4 cut(s)	63, 154, 157, 160
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	193, 211
BpiI	GAAGAC	1 cut(s)	111
Bsa29I	ATCGAT	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	3 cut(s)	17, 187, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	3 cut(s)	17, 187, 231
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	3 cut(s)	139, 145, 167
Bsh1285I	CGRYCG	2 cut(s)	23, 42
BshNI	GGYRCC	2 cut(s)	191, 209
BshVI	ATCGAT	1 cut(s)	42
BsiEI	CGRYCG	2 cut(s)	23, 42
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	39, 242
BspACI	CCGC	2 cut(s)	62, 72
BspDI	ATCGAT	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	193, 211
BspMAI	CTGCAG	1 cut(s)	157
BspT107I	GGYRCC	2 cut(s)	191, 209
BsrDI	GCAATG	1 cut(s)	195
BssECI	CCNNGG	3 cut(s)	17, 187, 231
BssMI	GATC	2 cut(s)	39, 242
BssT1I	CCWWGG	2 cut(s)	187, 231
Bst4CI	ACNGT	2 cut(s)	21, 53
Bst6I	CTCTTC	2 cut(s)	306, 321
BstDSI	CCRYGG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	42, 245
BstMBI	GATC	2 cut(s)	39, 242
BstMCI	CGRYCG	2 cut(s)	23, 42
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	139, 145, 167
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	42
BsuTUI	ATCGAT	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	3 cut(s)	223, 256, 296
CviJI	RGCY	4 cut(s)	28, 158, 230, 236
CviKI_1	RGCY	4 cut(s)	28, 158, 230, 236
CviQI	GTAC	1 cut(s)	192
DpnI	GATC	2 cut(s)	41, 244
DpnII	GATC	2 cut(s)	39, 242
Eam1104I	CTCTTC	2 cut(s)	306, 321
EarI	CTCTTC	2 cut(s)	306, 321
Eco130I	CCWWGG	2 cut(s)	187, 231
Eco32I	GATATC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	53
EcoRV	GATATC	1 cut(s)	46
EcoT14I	CCWWGG	2 cut(s)	187, 231
ErhI	CCWWGG	2 cut(s)	187, 231
FaeI	CATG	3 cut(s)	226, 259, 299
FaiI	YATR	6 cut(s)	134, 170, 224, 257, 292, 297
FatI	CATG	3 cut(s)	222, 255, 295
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	4 cut(s)	62, 153, 156, 159
Fsp4HI	GCNGC	4 cut(s)	62, 153, 156, 159
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	4 cut(s)	62, 153, 156, 159
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	3 cut(s)	226, 259, 299
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	3 cut(s)	77, 140, 279
HpaII	CCGG	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	145, 247
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	91, 301, 325
HpyCH4III	ACNGT	2 cut(s)	21, 53
HpyCH4V	TGCA	3 cut(s)	155, 200, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	226, 259, 299
KpnI	GGTACC	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	39, 242
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	3 cut(s)	97, 129, 192
Lsp1109I	GCAGC	3 cut(s)	139, 145, 167
MaeI	CTAG	1 cut(s)	240
MalI	GATC	2 cut(s)	41, 244
MboI	GATC	2 cut(s)	39, 242
MboII	GAAGA	4 cut(s)	113, 116, 323, 338
MflI	RGATCY	1 cut(s)	242
MluCI	AATT	3 cut(s)	110, 172, 218
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	66, 91, 307
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	2 cut(s)	39, 242
NlaIII	CATG	3 cut(s)	226, 259, 299
NlaIV	GGNNCC	2 cut(s)	193, 211
PfeI	GAWTC	2 cut(s)	140, 279
PkrI	GCNGC	4 cut(s)	63, 154, 157, 160
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspN4I	GGNNCC	2 cut(s)	193, 211
PspPI	GGNCC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	242
PvuI	CGATCG	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SatI	GCNGC	4 cut(s)	62, 153, 156, 159
Sau3AI	GATC	2 cut(s)	39, 242
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	71
SetI	ASST	4 cut(s)	30, 160, 189, 206
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	53
Sse9I	AATT	3 cut(s)	110, 172, 218
SsiI	CCGC	2 cut(s)	62, 72
SspMI	CTAG	1 cut(s)	240
StyI	CCWWGG	2 cut(s)	187, 231
TaaI	ACNGT	2 cut(s)	21, 53
TaqI	TCGA	2 cut(s)	23, 42
TasI	AATT	3 cut(s)	110, 172, 218
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	2 cut(s)	140, 279
TseI	GCWGC	3 cut(s)	152, 155, 158
TspDTI	ATGAA	2 cut(s)	211, 339
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	3 cut(s)	110, 172, 218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.