Rroxscaffold_5G00344960

Hsp90 protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
15155268 .. 15158509
3242 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00344960.1

Sequence Viewer

Length: 162 bp
ATGGAAGCCTTGGATGCTGGAGCTGATCTTAGCATGATTGGTCAGTTTGATGTTGGGTACTACTCTGCATATCTTGTTGCTGGGAAGGAAGAGGAAGGAATTCTAAAGATACTAATGTTGCTACGCTTAGATGGCCTCTACATTTTTGGCCTTTATGTATAG

Protein Analysis

53

Amino Acids

5.85

Weight (kDa)

4.07

Isoelectric Point (pI)

23.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 99
AfaI GTAC 1 cut(s) 59
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AoxI GGCC 2 cut(s) 133, 148
ApoI RAATTY 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 99
BaeI ACNNNNGTAYC 2 cut(s) 101, 134
BccI CCATC 1 cut(s) 125
BmsI GCATC 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 19
BseYI CCCAGC 1 cut(s) 80
BshFI GGCC 2 cut(s) 135, 150
BsnI GGCC 2 cut(s) 135, 150
Bsp143I GATC 1 cut(s) 25
BspANI GGCC 2 cut(s) 135, 150
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 29, 127
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 14, 132
BsuRI GGCC 2 cut(s) 135, 150
BtsCI GGATG 1 cut(s) 19
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 34
CviJI RGCY 4 cut(s) 8, 23, 135, 150
CviKI_1 RGCY 4 cut(s) 8, 23, 135, 150
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 2 cut(s) 29, 127
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 1 cut(s) 37
FaiI YATR 4 cut(s) 35, 70, 156, 160
FatI CATG 1 cut(s) 33
FokI GGATG 1 cut(s) 26
GsaI CCCAGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 135, 150
Hin1II CATG 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 79, 89
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 132
HpyF3I CTNAG 2 cut(s) 29, 127
Hsp92II CATG 1 cut(s) 37
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 2 cut(s) 3, 66
LweI GCATC 1 cut(s) 4
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 1 cut(s) 101
MluCI AATT 1 cut(s) 99
MnlI CCTC 2 cut(s) 85, 146
MroXI GAANNNNTTC 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 14, 132
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 80
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 25
SetI ASST 1 cut(s) 25
SfaNI GCATC 1 cut(s) 4
SgeI CNNG 5 cut(s) 22, 30, 46, 86, 93
Sse9I AATT 1 cut(s) 99
StyI CCWWGG 1 cut(s) 9
TasI AATT 1 cut(s) 99
XapI RAATTY 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.