Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003630.1

Orthogroup ID

OG0004549

Physical Location & Seq

Genomic Coordinates Reverse (-)

194928 .. 198788

Gene Structure 3861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003630.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgggatgttgtcacggtgcgctcagtaagtttcggggagagaaggcacttcaagtttctgtcactgcgtggaatattgtctcagatctcttgcccctcctagagaaagccagccatggtcgccgaagcaccacggtcgaagctccaatccccgatcgatatcaacggtcctctgccgctactccccgccgactcctccggcgttatttggtcaacaaccttggtaccattgcaaggtctggcaccaagaaattcatggaagccttggctactagatctgatgttagcatgattggtcagtttggtgttggattctactttgcatatcatgttgttgagaaggaagaggaagttgatgaagagaaggaagtggtcatgtttctggccttgatttttttgacatttatgtttaggcagggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

140

Amino Acids

15.79

Weight (kDa)

9.26

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004549)

Species	Orthologous Gene IDs
malus_domestica	MD12G1139100.v1.1
rosa_chinensis	RchiOBHm_Chr0c22g0500581 RchiOBHm_Chr1g0352491 RchiOBHm_Chr4g0400001 RchiOBHm_Chr6g0250761 RchiOBHm_Chr7g0206671 RchiOBHm_Chr7g0207021 RchiOBHm_Chr7g0207511
rosa_laevigata	RLG00000009219
rosa_multiflora	Rmu_sc0002040.1_g000047 Rmu_sc0003630.1_g000058 Rmu_sc0006740.1_g000001 Rmu_sc0032049.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344960
rosa_rugosa	Rorug05G0349600 Rorug05G0349600 Rorug05G0349700 Rorug05G0349800 Rorug05G0349900 Rorug07G0006700
rosa_samantha	Rh1AG243100 Rh2AG212000 Rh2AG491800 Rh4AG165600 Rh5DG127900 Rh5DG128800 Rh6AG317800 Rh7DG237200 Rh7DG237600 Rh7DG238400 Rh7DG401800
rosa_wichuraiana	Rw4G008140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	2 cut(s)	224, 242
AciI	CCGC	2 cut(s)	177, 187
AcsI	RAATTY	1 cut(s)	251
AdeI	CACNNNGTG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	53
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	384
ApoI	RAATTY	1 cut(s)	251
Asp718I	GGTACC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	168
BaeI	ACNNNNGTAYC	2 cut(s)	208, 241
BanI	GGYRCC	2 cut(s)	224, 242
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	2 cut(s)	101, 273
BglII	AGATCT	2 cut(s)	85, 275
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	226, 244
Bsa29I	ATCGAT	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	115, 132, 220, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	159
BseCI	ATCGAT	1 cut(s)	157
BseDI	CCNNGG	4 cut(s)	115, 132, 220, 264
BseGI	GGATG	1 cut(s)	11
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	37, 96
BseRI	GAGGAG	1 cut(s)	185
Bsh1285I	CGRYCG	2 cut(s)	138, 157
BshFI	GGCC	1 cut(s)	386
BshNI	GGYRCC	2 cut(s)	224, 242
BshVI	ATCGAT	1 cut(s)	157
BsiEI	CGRYCG	2 cut(s)	138, 157
BsiSI	CCGG	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	85, 154, 275
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	2 cut(s)	177, 187
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	2 cut(s)	36, 95
BspDI	ATCGAT	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	226, 244
BspT107I	GGYRCC	2 cut(s)	224, 242
BsrDI	GCAATG	1 cut(s)	228
BssECI	CCNNGG	4 cut(s)	115, 132, 220, 264
BssMI	GATC	3 cut(s)	85, 154, 275
BssT1I	CCWWGG	3 cut(s)	115, 220, 264
Bst4CI	ACNGT	3 cut(s)	17, 136, 168
Bst6I	CTCTTC	2 cut(s)	339, 354
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	23, 82
BstDSI	CCRYGG	2 cut(s)	115, 132
BstF5I	GGATG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	3 cut(s)	88, 157, 278
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	3 cut(s)	85, 154, 275
BstMCI	CGRYCG	2 cut(s)	138, 157
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstX2I	RGATCY	2 cut(s)	85, 275
BstYI	RGATCY	2 cut(s)	85, 275
Bsu15I	ATCGAT	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	386
BsuTUI	ATCGAT	1 cut(s)	157
BtgI	CCRYGG	2 cut(s)	115, 132
BtsCI	GGATG	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	168
ClaI	ATCGAT	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	5 cut(s)	116, 256, 289, 329, 376
CviJI	RGCY	6 cut(s)	110, 114, 143, 263, 269, 386
CviKI_1	RGCY	6 cut(s)	110, 114, 143, 263, 269, 386
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	2 cut(s)	23, 82
DpnI	GATC	3 cut(s)	87, 156, 277
DpnII	GATC	3 cut(s)	85, 154, 275
DraIII	CACNNNGTG	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	339, 354
EarI	CTCTTC	2 cut(s)	339, 354
Eco130I	CCWWGG	3 cut(s)	115, 220, 264
Eco32I	GATATC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	168
EcoRV	GATATC	1 cut(s)	161
EcoT14I	CCWWGG	3 cut(s)	115, 220, 264
ErhI	CCWWGG	3 cut(s)	115, 220, 264
FaeI	CATG	5 cut(s)	119, 259, 292, 332, 379
FaiI	YATR	7 cut(s)	117, 257, 290, 325, 330, 377, 407
FatI	CATG	5 cut(s)	115, 255, 288, 328, 375
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	101, 273
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	199
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	5 cut(s)	119, 259, 292, 332, 379
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	192, 312
HpaII	CCGG	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	85, 280
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	3 cut(s)	37, 334, 358
HpyCH4III	ACNGT	3 cut(s)	17, 136, 168
HpyCH4V	TGCA	2 cut(s)	233, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	2 cut(s)	23, 82
Hsp92II	CATG	5 cut(s)	119, 259, 292, 332, 379
HspAI	GCGC	1 cut(s)	20
KpnI	GGTACC	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	85, 154, 275
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	5 cut(s)	124, 212, 225, 368, 401
MaeI	CTAG	2 cut(s)	101, 273
MaeIII	GTNAC	2 cut(s)	11, 61
MalI	GATC	3 cut(s)	87, 156, 277
MboI	GATC	3 cut(s)	85, 154, 275
MboII	GAAGA	2 cut(s)	356, 371
MflI	RGATCY	2 cut(s)	85, 275
MluCI	AATT	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	4 cut(s)	107, 181, 206, 340
MspI	CCGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	3 cut(s)	85, 154, 275
NlaIII	CATG	5 cut(s)	119, 259, 292, 332, 379
NlaIV	GGNNCC	2 cut(s)	226, 244
NmuCI	GTSAC	2 cut(s)	11, 61
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	178
Ple19I	CGATCG	1 cut(s)	157
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	226, 244
PspPI	GGNCC	1 cut(s)	168
PsuI	RGATCY	2 cut(s)	85, 275
PvuI	CGATCG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	85, 154, 275
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	1 cut(s)	186
SetI	ASST	3 cut(s)	145, 222, 239
SinI	GGWCC	1 cut(s)	168
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	2 cut(s)	177, 187
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	2 cut(s)	101, 273
StyI	CCWWGG	3 cut(s)	115, 220, 264
TaaI	ACNGT	3 cut(s)	17, 136, 168
TaqI	TCGA	2 cut(s)	138, 157
TasI	AATT	1 cut(s)	251
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	312
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	2 cut(s)	11, 61
Tsp45I	GTSAC	2 cut(s)	11, 61
TspDTI	ATGAA	2 cut(s)	244, 372
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XspI	CTAG	2 cut(s)	101, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.