Rorug05G0349900

UNC93-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004549
Physical Location & Seq
Forward (+)
43451467 .. 43451872
406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0349900.1

Sequence Viewer

Length: 333 bp
ATGTCTTTGATGATGGTTGAATTGTTATTTTATATGAATTTGGGGTTGTCTGTTTTGGTAAGGATAGAAGTTGCCGAAGGCTTTGAGCTTGACGAAGTTGCTGGAGGCAACAAGCATCTTCAAGTTGAGGACGGCGATTTCGGCGGCCATGACGATGATTCGAAGCTTGTGGTGGTGAGAGCTTGGGAGGTGAGAGAGAGAGATGGTGGCCGGTGGGCCAAGGATCCAGAAGGCAGCGAGTATTTCAAATTGGGAATCATGGGGACAAATGAGAAATTCGCTCAACTGTCTAACGTCGAGTCGGTGGCGGAGGATGAGGAGAAGCTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UNC-93

Protein Analysis

110

Amino Acids

12.35

Weight (kDa)

4.38

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 144, 308
AclWI GGATC 2 cut(s) 218, 231
AcoI YGGCCR 2 cut(s) 145, 208
AcsI RAATTY 2 cut(s) 37, 275
AgsI TTSAA 3 cut(s) 20, 122, 247
AluBI AGCT 4 cut(s) 88, 166, 182, 325
AluI AGCT 4 cut(s) 88, 166, 182, 325
AlwI GGATC 2 cut(s) 218, 231
AoxI GGCC 3 cut(s) 145, 208, 216
ApeKI GCWGC 1 cut(s) 234
ApoI RAATTY 2 cut(s) 37, 275
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 187, 202
AsuII TTCGAA 1 cut(s) 161
BamHI GGATCC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 246
BccI CCATC 2 cut(s) 7, 197
BceAI ACGGC 1 cut(s) 148
BisI GCNGC 2 cut(s) 145, 235
BlsI GCNGC 2 cut(s) 146, 236
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 319
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 246
BshFI GGCC 3 cut(s) 147, 210, 218
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 3 cut(s) 147, 210, 218
Bsp119I TTCGAA 1 cut(s) 161
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 2 cut(s) 144, 308
BspANI GGCC 3 cut(s) 147, 210, 218
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 2 cut(s) 218, 231
BspT104I TTCGAA 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 161
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 3 cut(s) 147, 210, 218
BtsCI GGATG 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 216
CviAII CATG 2 cut(s) 149, 259
CviJI RGCY 8 cut(s) 81, 88, 147, 166, 182, 210, 218, 325
CviKI_1 RGCY 8 cut(s) 81, 88, 147, 166, 182, 210, 218, 325
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
EaeI YGGCCR 2 cut(s) 145, 208
EciI GGCGGA 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 152, 262
FaiI YATR 4 cut(s) 33, 35, 150, 260
FaqI GGGAC 1 cut(s) 277
FatI CATG 2 cut(s) 148, 258
Fnu4HI GCNGC 2 cut(s) 145, 235
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 2 cut(s) 145, 235
GluI GCNGC 2 cut(s) 145, 235
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 3 cut(s) 147, 210, 218
HapII CCGG 1 cut(s) 211
Hin1II CATG 2 cut(s) 152, 262
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 3 cut(s) 158, 255, 299
HpaII CCGG 1 cut(s) 211
HphI GGTGA 2 cut(s) 187, 202
Hpy188III TCNNGA 1 cut(s) 227
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 2 cut(s) 71, 224
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 2 cut(s) 152, 262
Kzo9I GATC 1 cut(s) 223
LpnPI CCDG 3 cut(s) 87, 224, 240
Lsp1109I GCAGC 1 cut(s) 246
LweI GCATC 1 cut(s) 124
MaeII ACGT 1 cut(s) 294
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 223
MluCI AATT 4 cut(s) 20, 37, 248, 275
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 5 cut(s) 98, 121, 181, 304, 310
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeII GATC 1 cut(s) 223
NlaIII CATG 2 cut(s) 152, 262
NlaIV GGNNCC 1 cut(s) 225
NspV TTCGAA 1 cut(s) 161
PfeI GAWTC 2 cut(s) 158, 255
PkrI GCNGC 2 cut(s) 146, 236
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 216
PsuI RGATCY 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 153
SatI GCNGC 2 cut(s) 145, 235
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 308
SetI ASST 6 cut(s) 90, 168, 184, 192, 297, 327
SfaNI GCATC 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 4 cut(s) 20, 37, 248, 275
SsiI CCGC 2 cut(s) 144, 308
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 297
TaqI TCGA 2 cut(s) 161, 297
TasI AATT 4 cut(s) 20, 37, 248, 275
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 2 cut(s) 158, 255
TseI GCWGC 1 cut(s) 234
TspDTI ATGAA 1 cut(s) 50
XapI RAATTY 2 cut(s) 37, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.