Rh7DG238400

heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004549
Physical Location & Seq
Forward (+)
24137296 .. 24139664
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG238400.1

Sequence Viewer

Length: 303 bp
ATGGTCGCCGAAGCACCACGGTCGAAGCTCCAATCCCCGATCGATATCAACGGTCCTCTGCCGCTACTCCCCGCCGACTCCTCCAGCGTTGTGGAGAAGGAAGAAGACGAATTTCCTGATGGAATTGGGATTAGAAGTCAAAACTGTTATCACAAGGAAGGGCATCAGGTGTCATCAATCATGTCCTTTGCCAAAGTAATAGATTTGGTCAACAACCTTGGTACCATTGCAAGGTCTGGCACCAAGAAATTCATGGAAGCCTTGGCTACTAGATCTGATGTTAGCATGATTGGTTTTTGTTAG

Protein Analysis

100

Amino Acids

10.82

Weight (kDa)

5.25

Isoelectric Point (pI)

61.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 221
AccB1I GGYRCC 2 cut(s) 221, 239
AciI CCGC 2 cut(s) 62, 72
AcsI RAATTY 2 cut(s) 110, 248
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 231
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
ApoI RAATTY 2 cut(s) 110, 248
Asp718I GGTACC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 53
BaeI ACNNNNGTAYC 2 cut(s) 205, 238
BanI GGYRCC 2 cut(s) 221, 239
BbsI GAAGAC 1 cut(s) 111
BccI CCATC 1 cut(s) 113
BcgI CGANNNNNNTGC 1 cut(s) 37
BfaI CTAG 1 cut(s) 270
BglII AGATCT 1 cut(s) 272
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 2 cut(s) 223, 241
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 67
Bsa29I ATCGAT 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 17, 217, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 44
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 17, 217, 261
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 70
Bsh1285I CGRYCG 2 cut(s) 23, 42
BshNI GGYRCC 2 cut(s) 221, 239
BshVI ATCGAT 1 cut(s) 42
BsiEI CGRYCG 2 cut(s) 23, 42
BslI CCNNNNNNNGG 1 cut(s) 231
Bsp143I GATC 2 cut(s) 39, 272
BspACI CCGC 2 cut(s) 62, 72
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 223, 241
BspT107I GGYRCC 2 cut(s) 221, 239
BsrDI GCAATG 1 cut(s) 225
BssECI CCNNGG 3 cut(s) 17, 217, 261
BssMI GATC 2 cut(s) 39, 272
BssT1I CCWWGG 2 cut(s) 217, 261
Bst4CI ACNGT 3 cut(s) 21, 53, 146
BstDSI CCRYGG 1 cut(s) 17
BstKTI GATC 2 cut(s) 42, 275
BstMBI GATC 2 cut(s) 39, 272
BstMCI CGRYCG 2 cut(s) 23, 42
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 272
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 1 cut(s) 272
Bsu15I ATCGAT 1 cut(s) 42
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 53
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 222
CviAII CATG 3 cut(s) 181, 253, 286
CviJI RGCY 3 cut(s) 28, 260, 266
CviKI_1 RGCY 3 cut(s) 28, 260, 266
CviQI GTAC 1 cut(s) 222
DpnI GATC 2 cut(s) 41, 274
DpnII GATC 2 cut(s) 39, 272
Eco130I CCWWGG 2 cut(s) 217, 261
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 53
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 2 cut(s) 217, 261
ErhI CCWWGG 2 cut(s) 217, 261
FaeI CATG 3 cut(s) 184, 256, 289
FaiI YATR 3 cut(s) 182, 254, 287
FatI CATG 3 cut(s) 180, 252, 285
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 1 cut(s) 270
GluI GCNGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 67
Hin1II CATG 3 cut(s) 184, 256, 289
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 91, 152
HpyCH4III ACNGT 3 cut(s) 21, 53, 146
HpyCH4V TGCA 1 cut(s) 230
Hsp92II CATG 3 cut(s) 184, 256, 289
KpnI GGTACC 1 cut(s) 225
Kzo9I GATC 2 cut(s) 39, 272
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 4 cut(s) 97, 129, 152, 222
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 270
MalI GATC 2 cut(s) 41, 274
MboI GATC 2 cut(s) 39, 272
MboII GAAGA 2 cut(s) 113, 116
MflI RGATCY 1 cut(s) 272
MluCI AATT 3 cut(s) 110, 123, 248
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 2 cut(s) 66, 91
NdeII GATC 2 cut(s) 39, 272
NlaIII CATG 3 cut(s) 184, 256, 289
NlaIV GGNNCC 2 cut(s) 223, 241
PkrI GCNGC 1 cut(s) 63
Ple19I CGATCG 1 cut(s) 42
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 223, 241
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 272
PvuI CGATCG 1 cut(s) 42
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 2 cut(s) 39, 272
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 71
SetI ASST 4 cut(s) 30, 171, 219, 236
SfaNI GCATC 1 cut(s) 172
SinI GGWCC 1 cut(s) 53
Sse9I AATT 3 cut(s) 110, 123, 248
SsiI CCGC 2 cut(s) 62, 72
SspMI CTAG 1 cut(s) 270
StyI CCWWGG 2 cut(s) 217, 261
TaaI ACNGT 3 cut(s) 21, 53, 146
TaqI TCGA 2 cut(s) 23, 42
TasI AATT 3 cut(s) 110, 123, 248
TauI GCSGC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 2 cut(s) 110, 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.