Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004549

Physical Location & Seq

Genomic Coordinates Reverse (-)

49061077 .. 49063640

Gene Structure 2564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009219

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGAGGATTCTTCCATCGCTATTGCCAGTTTCTCTCTCTCTCTCTCTCTCGCAATCTCACCGTCGGCCGGCATCCTTGCTTTGTGGGCGAGTGTTACACCCGGGACAGTGTTGATTGTATTGGCCTGAAGGTGGTTAGGAAACTGGGATCAAAGAATGCTTTGATTCTTGGGACTACTAGATATTGGTATATTATGGTTCCAGCTTCATTGTACTTGGGTTTTGCTGCTTCCATAATATGGGTTGGGCAGGTATATATCATTGGTTATGGCCCTGCAAAAAACCATTCGCTTGGTACCATTGCAAGGTCGGGCACCAAGGAATTCATGGAAGCCTTGGATGCTGGAGCTAATCTTAGCATGATTGGTCAGTTTGACGTTGGGTACTACTCTGCATATCTTGTTGCTGAGAAGGAAGAGGAAGGAATTCTAAAGATACTAATGTTGCTACGTTTAGATAGCCTTTACATTTTTGGCCTTTATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

163

Amino Acids

18.15

Weight (kDa)

8.87

Isoelectric Point (pI)

17.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004549)

Species	Orthologous Gene IDs
malus_domestica	MD12G1139100.v1.1
rosa_chinensis	RchiOBHm_Chr0c22g0500581 RchiOBHm_Chr1g0352491 RchiOBHm_Chr4g0400001 RchiOBHm_Chr6g0250761 RchiOBHm_Chr7g0206671 RchiOBHm_Chr7g0207021 RchiOBHm_Chr7g0207511
rosa_laevigata	RLG00000009219
rosa_multiflora	Rmu_sc0002040.1_g000047 Rmu_sc0003630.1_g000058 Rmu_sc0006740.1_g000001 Rmu_sc0032049.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344960
rosa_rugosa	Rorug05G0349600 Rorug05G0349600 Rorug05G0349700 Rorug05G0349800 Rorug05G0349900 Rorug07G0006700
rosa_samantha	Rh1AG243100 Rh2AG212000 Rh2AG491800 Rh4AG165600 Rh5DG127900 Rh5DG128800 Rh6AG317800 Rh7DG237200 Rh7DG237600 Rh7DG238400 Rh7DG401800
rosa_wichuraiana	Rw4G008140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	2 cut(s)	296, 314
AccB7I	CCANNNNNTGG	1 cut(s)	240
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	323, 426
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	3 cut(s)	215, 298, 386
AfiI	CCNNNNNNNGG	4 cut(s)	69, 133, 240, 306
AluBI	AGCT	2 cut(s)	206, 350
AluI	AGCT	2 cut(s)	206, 350
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	102
AoxI	GGCC	4 cut(s)	67, 124, 271, 475
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	2 cut(s)	323, 426
Asp700I	GAANNNNTTC	1 cut(s)	426
Asp718I	GGTACC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	2 cut(s)	103, 104
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	317
BaeI	ACNNNNGTAYC	2 cut(s)	428, 461
BanI	GGYRCC	2 cut(s)	296, 314
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	24
BcnI	CCSGG	2 cut(s)	103, 104
BfaI	CTAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	103, 104
BmeT110I	CYCGRG	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	3 cut(s)	201, 298, 316
BmrFI	CCNGG	2 cut(s)	103, 104
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	82, 331
BmuI	ACTGGG	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	366
BpuMI	CCSGG	2 cut(s)	103, 104
BsaJI	CCNNGG	3 cut(s)	102, 318, 336
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 133, 240, 306
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	2 cut(s)	28, 150
Bse3DI	GCAATG	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	102, 318, 336
BseGI	GGATG	2 cut(s)	73, 346
BseLI	CCNNNNNNNGG	4 cut(s)	69, 133, 240, 306
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	28, 150
BseSI	GKGCMC	1 cut(s)	317
BseX3I	CGGCCG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	214
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	4 cut(s)	69, 126, 273, 477
BshNI	GGYRCC	2 cut(s)	296, 314
BsiEI	CGRYCG	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	70, 103
BslFI	GGGAC	2 cut(s)	119, 187
BslI	CCNNNNNNNGG	4 cut(s)	69, 133, 240, 306
BsmFI	GGGAC	2 cut(s)	119, 187
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	69, 126, 273, 477
BsoBI	CYCGRG	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	149
BspANI	GGCC	4 cut(s)	69, 126, 273, 477
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	3 cut(s)	201, 298, 316
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	157
BspT107I	GGYRCC	2 cut(s)	296, 314
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	28, 150
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	3 cut(s)	102, 318, 336
BssMI	GATC	1 cut(s)	149
BssT1I	CCWWGG	2 cut(s)	318, 336
Bst4CI	ACNGT	2 cut(s)	64, 110
Bst6I	CTCTTC	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	356, 408
BstF5I	GGATG	2 cut(s)	73, 346
BstKTI	GATC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	149
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 341
BstSCI	CCNGG	2 cut(s)	101, 102
BstSLI	GKGCMC	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	214
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstZI	CGGCCG	1 cut(s)	67
BsuRI	GGCC	4 cut(s)	69, 126, 273, 477
BtgZI	GCGATG	1 cut(s)	2
BtsCI	GGATG	2 cut(s)	73, 346
BtsIMutI	CAGTG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	272
Cfr9I	CCCGGG	1 cut(s)	102
Csp6I	GTAC	3 cut(s)	214, 297, 385
CviAII	CATG	2 cut(s)	328, 361
CviJI	RGCY	8 cut(s)	69, 126, 206, 273, 335, 350, 462, 477
CviKI_1	RGCY	8 cut(s)	69, 126, 206, 273, 335, 350, 462, 477
CviQI	GTAC	3 cut(s)	214, 297, 385
DdeI	CTNAG	2 cut(s)	356, 408
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	67
EagI	CGGCCG	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EclXI	CGGCCG	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	318, 336
Eco52I	CGGCCG	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	102
EcoRI	GAATTC	2 cut(s)	323, 426
EcoT14I	CCWWGG	2 cut(s)	318, 336
ErhI	CCWWGG	2 cut(s)	318, 336
FaeI	CATG	2 cut(s)	331, 364
FaqI	GGGAC	2 cut(s)	119, 187
FatI	CATG	2 cut(s)	327, 360
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	2 cut(s)	60, 353
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	4 cut(s)	69, 126, 273, 477
HapII	CCGG	2 cut(s)	70, 103
Hin1II	CATG	2 cut(s)	331, 364
HinfI	GANTC	2 cut(s)	9, 166
HpaII	CCGG	2 cut(s)	70, 103
HphI	GGTGA	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	124, 406, 416
HpyCH4III	ACNGT	2 cut(s)	64, 110
HpyCH4IV	ACGT	2 cut(s)	378, 451
HpyCH4V	TGCA	3 cut(s)	278, 305, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 341
HpyF3I	CTNAG	2 cut(s)	356, 408
HpySE526I	ACGT	2 cut(s)	378, 451
Hsp92II	CATG	2 cut(s)	331, 364
KpnI	GGTACC	1 cut(s)	300
KroI	GCCGGC	1 cut(s)	69
KroNI	GCCGGC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	9 cut(s)	41, 83, 116, 131, 140, 216, 236, 288, 330
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	82, 331
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	2 cut(s)	378, 451
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	2 cut(s)	4, 428
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	2 cut(s)	323, 426
MnlI	CCTC	1 cut(s)	412
MroNI	GCCGGC	1 cut(s)	69
MroXI	GAANNNNTTC	1 cut(s)	426
MspI	CCGG	2 cut(s)	70, 103
MspR9I	CCNGG	2 cut(s)	103, 104
Mva1269I	GAATGC	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	87, 341
NaeI	GCCGGC	1 cut(s)	71
NciI	CCSGG	2 cut(s)	103, 104
NdeII	GATC	1 cut(s)	149
NgoMIV	GCCGGC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	331, 364
NlaIV	GGNNCC	3 cut(s)	201, 298, 316
PctI	GAATGC	1 cut(s)	163
PdiI	GCCGGC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	9, 166
PflMI	CCANNNNNTGG	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	201, 298, 316
PspPI	GGNCC	1 cut(s)	272
RsaI	GTAC	3 cut(s)	215, 298, 386
RsaNI	GTAC	3 cut(s)	214, 297, 385
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	149
Sau96I	GGNCC	1 cut(s)	272
ScrFI	CCNGG	2 cut(s)	103, 104
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	7 cut(s)	135, 208, 255, 311, 352, 381, 454
SfaNI	GCATC	2 cut(s)	82, 331
SmaI	CCCGGG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	323, 426
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	101, 102
StyI	CCWWGG	2 cut(s)	318, 336
TaaI	ACNGT	2 cut(s)	64, 110
TaiI	ACGT	2 cut(s)	381, 454
TasI	AATT	2 cut(s)	323, 426
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	9, 166
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	198, 316
TspMI	CCCGGG	1 cut(s)	102
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	240
XapI	RAATTY	2 cut(s)	323, 426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmaI	CCCGGG	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.