Rmu_sc0006740.1_g000001

Ion channel regulatory protein UNC-93

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006740.1
OG0004549
Physical Location & Seq
Reverse (-)
6982 .. 9040
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006740.1_g000001.1.cds

Sequence Viewer

Length: 459 bp
atgacttatgggctttatctgatgagaggattcttccatcggtattgccagtttctctctcgcaatctcacagtcggccggcatccttgctttgtgggcgagtgttacacccgggacagtgttgattgtattggcctgaagcaacttttatctggattgcttattgttactggtcagcttcactttgattttctcttacaaaaatatgacctggtggttaggaaactgggatcaaagaatgctttgattcttgggactactagatattggttgttcattgctgaaaatttgaatccaacttggtatattatggttccagctttattgtacttgggttttgctgcttccataatatgggttgggcagtattttgaagcagccatttgcttggtaccattgcaaggtctggcaccaaggaattcatggaagccttggatgctggagctgatcttagcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UNC-93

Protein Analysis

152

Amino Acids

17.5

Weight (kDa)

9.04

Isoelectric Point (pI)

20.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 391
AccB1I GGYRCC 2 cut(s) 391, 409
AccB7I CCANNNNNTGG 1 cut(s) 354
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 2 cut(s) 286, 418
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 2 cut(s) 329, 393
AfiI CCNNNNNNNGG 2 cut(s) 354, 401
AgsI TTSAA 2 cut(s) 292, 374
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 3 cut(s) 178, 320, 445
AluI AGCT 3 cut(s) 178, 320, 445
AlwI GGATC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 2 cut(s) 76, 133
ApeKI GCWGC 2 cut(s) 341, 377
ApoI RAATTY 2 cut(s) 286, 418
Asp718I GGTACC 1 cut(s) 391
AsuC2I CCSGG 2 cut(s) 112, 113
AvaI CYCGRG 1 cut(s) 111
BanI GGYRCC 2 cut(s) 391, 409
BbvI GCAGC 2 cut(s) 328, 389
BccI CCATC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 212
BcnI CCSGG 2 cut(s) 112, 113
BfaI CTAG 1 cut(s) 261
BisI GCNGC 2 cut(s) 342, 378
BlsI GCNGC 2 cut(s) 343, 379
Bme1390I CCNGG 3 cut(s) 112, 113, 212
BmeT110I CYCGRG 1 cut(s) 111
BmiI GGNNCC 3 cut(s) 315, 393, 411
BmrFI CCNGG 3 cut(s) 112, 113, 212
BmrI ACTGGG 1 cut(s) 236
BmsI GCATC 2 cut(s) 91, 426
BmuI ACTGGG 1 cut(s) 236
BpuMI CCSGG 2 cut(s) 112, 113
BsaJI CCNNGG 3 cut(s) 111, 413, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 401
Bse118I RCCGGY 1 cut(s) 78
Bse1I ACTGG 3 cut(s) 49, 175, 231
Bse3DI GCAATG 2 cut(s) 276, 395
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 3 cut(s) 111, 413, 431
BseGI GGATG 2 cut(s) 82, 441
BseLI CCNNNNNNNGG 2 cut(s) 354, 401
BseMI GCAATG 2 cut(s) 276, 395
BseNI ACTGG 3 cut(s) 49, 175, 231
BseX3I CGGCCG 1 cut(s) 76
BseXI GCAGC 2 cut(s) 328, 389
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 2 cut(s) 78, 135
BshNI GGYRCC 2 cut(s) 391, 409
BsiEI CGRYCG 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 2 cut(s) 79, 112
BslFI GGGAC 2 cut(s) 128, 268
BslI CCNNNNNNNGG 2 cut(s) 354, 401
BsmFI GGGAC 2 cut(s) 128, 268
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 2 cut(s) 78, 135
BsoBI CYCGRG 1 cut(s) 111
Bsp143I GATC 2 cut(s) 230, 447
BspANI GGCC 2 cut(s) 78, 135
BspLI GGNNCC 3 cut(s) 315, 393, 411
BspPI GGATC 1 cut(s) 238
BspT107I GGYRCC 2 cut(s) 391, 409
BsrDI GCAATG 2 cut(s) 276, 395
BsrFI RCCGGY 1 cut(s) 78
BsrI ACTGG 3 cut(s) 49, 175, 231
BssAI RCCGGY 1 cut(s) 78
BssECI CCNNGG 3 cut(s) 111, 413, 431
BssMI GATC 2 cut(s) 230, 447
BssT1I CCWWGG 2 cut(s) 413, 431
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 2 cut(s) 73, 119
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 451
BstF5I GGATG 2 cut(s) 82, 441
BstKTI GATC 2 cut(s) 233, 450
BstMBI GATC 2 cut(s) 230, 447
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 96, 436
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 3 cut(s) 110, 111, 210
BstV1I GCAGC 2 cut(s) 328, 389
BstXI CCANNNNNNTGG 1 cut(s) 388
BstZI CGGCCG 1 cut(s) 76
BsuRI GGCC 2 cut(s) 78, 135
BtsCI GGATG 2 cut(s) 82, 441
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 78
Cfr9I CCCGGG 1 cut(s) 111
CsiI ACCWGGT 1 cut(s) 210
Csp6I GTAC 2 cut(s) 328, 392
CviAII CATG 2 cut(s) 423, 456
CviJI RGCY 8 cut(s) 13, 78, 135, 178, 320, 380, 430, 445
CviKI_1 RGCY 8 cut(s) 13, 78, 135, 178, 320, 380, 430, 445
CviQI GTAC 2 cut(s) 328, 392
DdeI CTNAG 1 cut(s) 451
DpnI GATC 2 cut(s) 232, 449
DpnII GATC 2 cut(s) 230, 447
EaeI YGGCCR 1 cut(s) 76
EagI CGGCCG 1 cut(s) 76
EclXI CGGCCG 1 cut(s) 76
Eco130I CCWWGG 2 cut(s) 413, 431
Eco52I CGGCCG 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 2 cut(s) 413, 431
ErhI CCWWGG 2 cut(s) 413, 431
FaeI CATG 2 cut(s) 426, 459
FaiI YATR 8 cut(s) 9, 207, 306, 311, 350, 355, 424, 457
FaqI GGGAC 2 cut(s) 128, 268
FatI CATG 2 cut(s) 422, 455
Fnu4HI GCNGC 2 cut(s) 342, 378
FokI GGATG 2 cut(s) 69, 448
Fsp4HI GCNGC 2 cut(s) 342, 378
FspBI CTAG 1 cut(s) 261
GluI GCNGC 2 cut(s) 342, 378
HaeIII GGCC 2 cut(s) 78, 135
HapII CCGG 2 cut(s) 79, 112
Hin1II CATG 2 cut(s) 426, 459
HinfI GANTC 3 cut(s) 30, 247, 292
HpaII CCGG 2 cut(s) 79, 112
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 73, 119
HpyCH4V TGCA 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 436
HpyF3I CTNAG 1 cut(s) 451
Hsp92II CATG 2 cut(s) 426, 459
KpnI GGTACC 1 cut(s) 395
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
Kzo9I GATC 2 cut(s) 230, 447
LmnI GCTCC 1 cut(s) 442
Lsp1109I GCAGC 2 cut(s) 328, 389
LweI GCATC 2 cut(s) 91, 426
MabI ACCWGGT 1 cut(s) 210
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 104, 166
MalI GATC 2 cut(s) 232, 449
MboI GATC 2 cut(s) 230, 447
MboII GAAGA 1 cut(s) 25
MluCI AATT 2 cut(s) 286, 418
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 1 cut(s) 20
MroNI GCCGGC 1 cut(s) 78
MspI CCGG 2 cut(s) 79, 112
MspR9I CCNGG 3 cut(s) 112, 113, 212
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 2 cut(s) 96, 436
NaeI GCCGGC 1 cut(s) 80
NciI CCSGG 2 cut(s) 112, 113
NdeII GATC 2 cut(s) 230, 447
NgoMIV GCCGGC 1 cut(s) 78
NlaIII CATG 2 cut(s) 426, 459
NlaIV GGNNCC 3 cut(s) 315, 393, 411
PctI GAATGC 1 cut(s) 244
PdiI GCCGGC 1 cut(s) 80
PfeI GAWTC 3 cut(s) 30, 247, 292
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 2 cut(s) 343, 379
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 3 cut(s) 315, 393, 411
RsaI GTAC 2 cut(s) 329, 393
RsaNI GTAC 2 cut(s) 328, 392
SatI GCNGC 2 cut(s) 342, 378
Sau3AI GATC 2 cut(s) 230, 447
ScrFI CCNGG 3 cut(s) 112, 113, 212
SetI ASST 5 cut(s) 180, 213, 322, 406, 447
SexAI ACCWGGT 1 cut(s) 210
SfaNI GCATC 2 cut(s) 91, 426
SmaI CCCGGG 1 cut(s) 113
Sse9I AATT 2 cut(s) 286, 418
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 3 cut(s) 110, 111, 210
StyI CCWWGG 2 cut(s) 413, 431
TaaI ACNGT 2 cut(s) 73, 119
TasI AATT 2 cut(s) 286, 418
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 3 cut(s) 30, 247, 292
TscAI CASTG 1 cut(s) 124
TseI GCWGC 2 cut(s) 341, 377
TspDTI ATGAA 2 cut(s) 265, 411
TspMI CCCGGG 1 cut(s) 111
TspRI CASTG 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 354
XapI RAATTY 2 cut(s) 286, 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 420
XmaI CCCGGG 1 cut(s) 111
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.