Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003791

Physical Location & Seq

Genomic Coordinates Forward (+)

1365800 .. 1366952

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1018800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCTATACTTTGCATACTATTCTGGTGATGATGATAGTAGCATCGTACGGGAGACTTGGGCTAGATTGATTGATCAAGCTCTTTCAAGGGGTGGCATTGCTGAAGCTTGTGCAGTTTTGAAGAGAGTTGGTTCTCACATTTATCCTGGAGATGGAGCTGGTTTACCCCTAGACACATTGTGTCTACACCTCGAGAAAGCTGCAATGGATCGACTGGAATCAGGGGTTGAATCGGTTGGGGGTGAAGATGTGGCAAGGGCTCTTCTTGCTGCATGCAAGGGTGCAACTGAGCCTGTATTGAACACTTATGACCAACTGTTGACGAGTGGTGCTATTTTGCCTTCACCAAACCTTAGGTTACGCCTTCTCCGATCAGTGCTAGTAGTACTGCGAGAGTGGGCAATGTCTGTGTTTGCACAGAGAATGGGTACTAGTGCTACTGGAGCTTCGTTAATTTTAGGTGGAACTTTCTCGATGGAGCAAACCGCAGTCCTCAACCAAGGGGTTCGAGATAAGATCTCAAGTGCAGCAAACAGGTATACGACGGAGGTACGAAGGTTGGCCCTTCCGCAAAGCCAGACTGAAGCTGTTTACCATGGCTTTCGAGAACTCGAAGAATCGCTGAAAAGTCCCTTTTCCTTTGATCGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006998 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010256 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0017038 GO:0017056 GO:0030054 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044611 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0061024 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

218

Amino Acids

23.59

Weight (kDa)

5.68

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14850
fragaria_vesca	FvH4_4g33560 FvH4_4g33560 FvH4_4g33560
malus_domestica	MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1
prunus_persica	Prupe.1G333300_v2.0.a1
pyrus_communis	pycom13g01720 pycom16g01690
rosa_chinensis	RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061
rosa_laevigata	RLG00000005957 RLG00000021689
rosa_multiflora	Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083800 Rroxscaffold_5G00383690
rosa_rugosa	Rorug04G0344100
rosa_samantha	Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800
rosa_wichuraiana	Rw2G049490 Rw4G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	184, 539
AciI	CCGC	2 cut(s)	486, 569
AclWI	GGATC	1 cut(s)	216
AcuI	CTGAAG	2 cut(s)	123, 603
AdeI	CACNNNGTG	1 cut(s)	180
AfaI	GTAC	4 cut(s)	48, 387, 430, 552
AfiI	CCNNNNNNNGG	2 cut(s)	152, 645
AgsI	TTSAA	4 cut(s)	87, 121, 230, 301
AhlI	ACTAGT	1 cut(s)	431
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	6 cut(s)	80, 107, 158, 200, 446, 587
AluI	AGCT	6 cut(s)	80, 107, 158, 200, 446, 587
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	561
ApeKI	GCWGC	3 cut(s)	200, 269, 527
AspS9I	GGNCC	1 cut(s)	562
AsuHPI	GGTGA	3 cut(s)	38, 254, 336
AvaI	CYCGRG	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	353
BaeI	ACNNNNGTAYC	2 cut(s)	542, 575
BanII	GRGCYC	1 cut(s)	262
BbvI	GCAGC	3 cut(s)	187, 256, 539
BccI	CCATC	2 cut(s)	146, 469
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	47
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	4 cut(s)	63, 170, 380, 432
BglII	AGATCT	1 cut(s)	516
BisI	GCNGC	3 cut(s)	201, 270, 528
BlsI	GCNGC	3 cut(s)	202, 271, 529
BmcAI	AGTACT	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	51
BpmI	CTGGAG	2 cut(s)	168, 462
BpuEI	CTTGAG	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	499, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 645
Bse1I	ACTGG	2 cut(s)	219, 445
Bse21I	CCTNAGG	1 cut(s)	353
Bse3DI	GCAATG	3 cut(s)	96, 210, 408
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	499, 595
BseLI	CCNNNNNNNGG	2 cut(s)	152, 645
BseMI	GCAATG	3 cut(s)	96, 210, 408
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	219, 445
BseXI	GCAGC	3 cut(s)	187, 256, 539
BsgI	GTGCAG	2 cut(s)	132, 546
BshFI	GGCC	1 cut(s)	563
BsiHKCI	CYCGRG	1 cut(s)	191
BsiWI	CGTACG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	2 cut(s)	152, 645
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	615
BsnI	GGCC	1 cut(s)	563
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	5 cut(s)	73, 208, 371, 516, 643
Bsp19I	CCATGG	1 cut(s)	595
BspACI	CCGC	2 cut(s)	486, 569
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	267
BsrDI	GCAATG	3 cut(s)	96, 210, 408
BsrI	ACTGG	2 cut(s)	219, 445
BssECI	CCNNGG	2 cut(s)	499, 595
BssMI	GATC	5 cut(s)	73, 208, 371, 516, 643
BssNAI	GTATAC	1 cut(s)	540
BssT1I	CCWWGG	2 cut(s)	499, 595
Bst1107I	GTATAC	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	2 cut(s)	116, 267
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	2 cut(s)	288, 353
BstDSI	CCRYGG	1 cut(s)	595
BstKTI	GATC	5 cut(s)	76, 211, 374, 519, 646
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	5 cut(s)	73, 208, 371, 516, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 443
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	145
BstV1I	GCAGC	3 cut(s)	187, 256, 539
BstX2I	RGATCY	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	516
BstZ17I	GTATAC	1 cut(s)	540
Bsu36I	CCTNAGG	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	563
BtgI	CCRYGG	1 cut(s)	595
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	562
Csp6I	GTAC	4 cut(s)	47, 386, 429, 551
CviAII	CATG	2 cut(s)	273, 596
CviQI	GTAC	4 cut(s)	47, 386, 429, 551
DdeI	CTNAG	2 cut(s)	288, 353
DpnI	GATC	5 cut(s)	75, 210, 373, 518, 645
DpnII	GATC	5 cut(s)	73, 208, 371, 516, 643
DraIII	CACNNNGTG	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	116, 267
EarI	CTCTTC	2 cut(s)	116, 267
Eco130I	CCWWGG	2 cut(s)	499, 595
Eco24I	GRGCYC	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	123, 603
Eco81I	CCTNAGG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	499, 595
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	2 cut(s)	499, 595
FaeI	CATG	2 cut(s)	276, 599
FaiI	YATR	6 cut(s)	7, 16, 274, 309, 540, 597
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	2 cut(s)	272, 595
FbaI	TGATCA	1 cut(s)	73
FblI	GTMKAC	2 cut(s)	184, 539
Fnu4HI	GCNGC	3 cut(s)	201, 270, 528
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	3 cut(s)	201, 270, 528
FspBI	CTAG	4 cut(s)	63, 170, 380, 432
GluI	GCNGC	3 cut(s)	201, 270, 528
GsuI	CTGGAG	2 cut(s)	168, 462
HaeIII	GGCC	1 cut(s)	563
Hin1II	CATG	2 cut(s)	276, 599
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	3 cut(s)	218, 230, 617
HphI	GGTGA	3 cut(s)	38, 254, 336
Hpy166II	GTNNAC	5 cut(s)	164, 185, 321, 540, 592
Hpy188I	TCNGA	1 cut(s)	371
Hpy188III	TCNNGA	4 cut(s)	193, 472, 509, 605
Hpy8I	GTNNAC	5 cut(s)	164, 185, 321, 540, 592
Hpy99I	CGWCG	1 cut(s)	547
HpyAV	CCTTC	4 cut(s)	351, 374, 549, 575
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4V	TGCA	8 cut(s)	14, 113, 203, 272, 276, 284, 416, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 443
HpyF3I	CTNAG	2 cut(s)	288, 353
Hsp92II	CATG	2 cut(s)	276, 599
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	5 cut(s)	73, 208, 371, 516, 643
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	3 cut(s)	155, 443, 478
Lsp1109I	GCAGC	3 cut(s)	187, 256, 539
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	4 cut(s)	63, 170, 380, 432
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	5 cut(s)	75, 210, 373, 518, 645
MboI	GATC	5 cut(s)	73, 208, 371, 516, 643
MboII	GAAGA	4 cut(s)	133, 254, 257, 626
MflI	RGATCY	1 cut(s)	516
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	1 cut(s)	453
MnlI	CCTC	3 cut(s)	200, 503, 541
MseI	TTAA	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	266, 443
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	5 cut(s)	73, 208, 371, 516, 643
NlaIII	CATG	2 cut(s)	276, 599
NspI	RCATGY	1 cut(s)	276
PaeI	GCATGC	1 cut(s)	276
PaeR7I	CTCGAG	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	367
PfeI	GAWTC	3 cut(s)	218, 230, 617
Pfl23II	CGTACG	1 cut(s)	46
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	3 cut(s)	202, 271, 529
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspLI	CGTACG	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	516
RsaI	GTAC	4 cut(s)	48, 387, 430, 552
RsaNI	GTAC	4 cut(s)	47, 386, 429, 551
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	3 cut(s)	201, 270, 528
Sau3AI	GATC	5 cut(s)	73, 208, 371, 516, 643
Sau96I	GGNCC	1 cut(s)	562
ScaI	AGTACT	1 cut(s)	387
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	262
SfaNI	GCATC	1 cut(s)	51
Sfr274I	CTCGAG	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	191, 520
SmoI	CTYRAG	2 cut(s)	191, 520
SpeI	ACTAGT	1 cut(s)	431
SphI	GCATGC	1 cut(s)	276
Sse9I	AATT	1 cut(s)	453
SsiI	CCGC	2 cut(s)	486, 569
SspMI	CTAG	4 cut(s)	63, 170, 380, 432
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	2 cut(s)	499, 595
TaaI	ACNGT	1 cut(s)	318
TaqI	TCGA	6 cut(s)	192, 211, 473, 508, 604, 612
TasI	AATT	1 cut(s)	453
TatI	WGTACW	1 cut(s)	385
TfiI	GAWTC	3 cut(s)	218, 230, 617
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	3 cut(s)	200, 269, 527
TspGWI	ACGGA	1 cut(s)	560
TspRI	CASTG	1 cut(s)	381
XceI	RCATGY	1 cut(s)	276
XhoI	CTCGAG	1 cut(s)	191
XmiI	GTMKAC	2 cut(s)	184, 539
XspI	CTAG	4 cut(s)	63, 170, 380, 432
ZrmI	AGTACT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.